Fluorine in PDB 8wto: Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation

Other elements in 8wto:

The structure of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation (pdb code 8wto). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation, PDB code: 8wto:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:19.6
occ:1.00
 F1 A:BEF802 0.0 19.6 1.0
BE A:BEF802 1.5 19.6 1.0
F3 A:BEF802 2.5 19.6 1.0
MG A:MG803 2.5 19.6 1.0
F2 A:BEF802 2.6 19.6 1.0
O3B A:ADP801 2.6 19.6 1.0
NE2 A:GLN172 3.0 14.6 1.0
OE1 A:GLN172 3.1 14.6 1.0
OE2 A:GLU257 3.3 17.1 1.0
N B:GLY234 3.3 11.7 1.0
N B:GLY235 3.4 12.2 1.0
O A:HOH902 3.4 10.9 1.0
CD A:GLN172 3.4 14.6 1.0
O A:HOH901 3.5 14.7 1.0
O2B A:ADP801 3.7 19.6 1.0
PB A:ADP801 3.7 19.6 1.0
CA B:GLY234 3.8 11.7 1.0
CB B:SER233 4.0 11.4 1.0
OG B:SER233 4.0 11.4 1.0
C B:GLY234 4.0 11.7 1.0
CD A:GLU257 4.2 17.1 1.0
NE2 A:HIS289 4.3 18.7 1.0
OE1 A:GLU257 4.3 17.1 1.0
C B:SER233 4.3 11.4 1.0
CA B:GLY235 4.4 12.2 1.0
CA B:SER233 4.6 11.4 1.0
O B:GLY261 4.7 17.0 1.0
OG A:SER132 4.7 13.1 1.0
CG A:GLN172 4.7 14.6 1.0
NZ A:LYS131 4.8 14.8 1.0
O3A A:ADP801 4.8 19.6 1.0
O1B A:ADP801 4.8 19.6 1.0
OG A:SER127 4.8 14.9 1.0

Fluorine binding site 2 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:19.6
occ:1.00
 F2 A:BEF802 0.0 19.6 1.0
BE A:BEF802 1.6 19.6 1.0
O3B A:ADP801 2.2 19.6 1.0
F3 A:BEF802 2.5 19.6 1.0
F1 A:BEF802 2.6 19.6 1.0
NZ A:LYS131 2.6 14.8 1.0
NE2 A:HIS289 2.9 18.7 1.0
CE1 A:HIS289 3.0 18.7 1.0
PB A:ADP801 3.3 19.6 1.0
CA A:SER127 3.4 14.9 1.0
O1B A:ADP801 3.5 19.6 1.0
OE2 A:GLU257 3.6 17.1 1.0
CE A:LYS131 3.7 14.8 1.0
O2B A:ADP801 3.8 19.6 1.0
CB A:SER127 3.9 14.9 1.0
O A:HOH901 3.9 14.7 1.0
OG A:SER127 4.0 14.9 1.0
N A:GLY128 4.0 13.3 1.0
MG A:MG803 4.0 19.6 1.0
O A:ALA126 4.2 16.6 1.0
N A:SER127 4.2 14.9 1.0
CD2 A:HIS289 4.2 18.7 1.0
C A:SER127 4.2 14.9 1.0
ND1 A:HIS289 4.3 18.7 1.0
O B:GLY261 4.4 17.0 1.0
C A:ALA126 4.5 16.6 1.0
CD A:GLU257 4.5 17.1 1.0
OG B:SER233 4.7 11.4 1.0
N B:GLY235 4.7 12.2 1.0
O3A A:ADP801 4.7 19.6 1.0
OE1 A:GLU257 4.9 17.1 1.0
CG A:HIS289 4.9 18.7 1.0
CA B:GLY235 5.0 12.2 1.0

Fluorine binding site 3 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:19.6
occ:1.00
 F3 A:BEF802 0.0 19.6 1.0
BE A:BEF802 1.5 19.6 1.0
O3B A:ADP801 2.3 19.6 1.0
OG B:SER233 2.4 11.4 1.0
OG A:SER127 2.5 14.9 1.0
F1 A:BEF802 2.5 19.6 1.0
F2 A:BEF802 2.5 19.6 1.0
N B:GLY235 2.8 12.2 1.0
CB B:SER233 3.2 11.4 1.0
CB A:SER127 3.2 14.9 1.0
CA B:GLY235 3.3 12.2 1.0
CA A:SER127 3.4 14.9 1.0
N A:GLY128 3.4 13.3 1.0
C A:SER127 3.7 14.9 1.0
N B:GLY234 3.8 11.7 1.0
N B:GLU236 3.8 12.7 1.0
PB A:ADP801 3.8 19.6 1.0
C B:GLY235 3.9 12.2 1.0
C B:GLY234 4.0 11.7 1.0
C B:SER233 4.1 11.4 1.0
CA B:SER233 4.3 11.4 1.0
CA B:GLY234 4.4 11.7 1.0
MG A:MG803 4.4 19.6 1.0
O B:GLY261 4.5 17.0 1.0
CA A:GLY128 4.5 13.3 1.0
O3A A:ADP801 4.5 19.6 1.0
O1B A:ADP801 4.6 19.6 1.0
O2B A:ADP801 4.6 19.6 1.0
NE2 A:HIS289 4.7 18.7 1.0
N A:SER127 4.7 14.9 1.0
O A:HOH902 4.7 10.9 1.0
O B:SER233 4.8 11.4 1.0
O A:SER127 4.8 14.9 1.0
CG B:GLU236 4.9 12.7 1.0
NZ A:LYS131 4.9 14.8 1.0
CE1 A:HIS289 5.0 18.7 1.0

Fluorine binding site 4 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:19.6
occ:1.00
 F1 B:BEF802 0.0 19.6 1.0
BE B:BEF802 1.5 19.6 1.0
F3 B:BEF802 2.5 19.6 1.0
MG B:MG803 2.5 19.6 1.0
F2 B:BEF802 2.6 19.6 1.0
O3B B:ADP801 2.6 19.6 1.0
NE2 B:GLN172 3.0 14.7 1.0
OE1 B:GLN172 3.1 14.7 1.0
OE2 B:GLU257 3.3 17.2 1.0
N A:GLY234 3.3 11.8 1.0
O B:HOH902 3.4 11.0 1.0
N A:GLY235 3.4 12.3 1.0
CD B:GLN172 3.4 14.7 1.0
O B:HOH901 3.5 14.7 1.0
O2B B:ADP801 3.7 19.6 1.0
PB B:ADP801 3.7 19.6 1.0
CA A:GLY234 3.8 11.8 1.0
CB A:SER233 4.0 11.5 1.0
OG A:SER233 4.0 11.5 1.0
C A:GLY234 4.0 11.8 1.0
CD B:GLU257 4.2 17.2 1.0
NE2 B:HIS289 4.3 18.7 1.0
OE1 B:GLU257 4.3 17.2 1.0
C A:SER233 4.3 11.5 1.0
CA A:GLY235 4.4 12.3 1.0
CA A:SER233 4.6 11.5 1.0
O A:GLY261 4.7 17.1 1.0
OG B:SER132 4.7 13.2 1.0
O3A B:ADP801 4.7 19.6 1.0
NZ B:LYS131 4.7 14.8 1.0
CG B:GLN172 4.7 14.7 1.0
O1B B:ADP801 4.8 19.6 1.0
OG B:SER127 4.8 15.0 1.0

Fluorine binding site 5 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:19.6
occ:1.00
 F2 B:BEF802 0.0 19.6 1.0
BE B:BEF802 1.6 19.6 1.0
O3B B:ADP801 2.2 19.6 1.0
F3 B:BEF802 2.5 19.6 1.0
F1 B:BEF802 2.6 19.6 1.0
NZ B:LYS131 2.6 14.8 1.0
NE2 B:HIS289 2.9 18.7 1.0
CE1 B:HIS289 3.0 18.7 1.0
PB B:ADP801 3.3 19.6 1.0
CA B:SER127 3.4 15.0 1.0
O1B B:ADP801 3.5 19.6 1.0
OE2 B:GLU257 3.6 17.2 1.0
CE B:LYS131 3.7 14.8 1.0
O2B B:ADP801 3.8 19.6 1.0
CB B:SER127 3.9 15.0 1.0
O B:HOH901 3.9 14.7 1.0
OG B:SER127 3.9 15.0 1.0
N B:GLY128 4.0 13.4 1.0
MG B:MG803 4.0 19.6 1.0
O B:ALA126 4.2 16.8 1.0
N B:SER127 4.2 15.0 1.0
CD2 B:HIS289 4.2 18.7 1.0
C B:SER127 4.2 15.0 1.0
ND1 B:HIS289 4.3 18.7 1.0
O A:GLY261 4.4 17.1 1.0
C B:ALA126 4.5 16.8 1.0
CD B:GLU257 4.5 17.2 1.0
OG A:SER233 4.6 11.5 1.0
N A:GLY235 4.7 12.3 1.0
O3A B:ADP801 4.7 19.6 1.0
OE1 B:GLU257 4.9 17.2 1.0
CG B:HIS289 4.9 18.7 1.0

Fluorine binding site 6 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:19.6
occ:1.00
 F3 B:BEF802 0.0 19.6 1.0
BE B:BEF802 1.5 19.6 1.0
O3B B:ADP801 2.4 19.6 1.0
OG B:SER127 2.4 15.0 1.0
OG A:SER233 2.4 11.5 1.0
F1 B:BEF802 2.5 19.6 1.0
F2 B:BEF802 2.5 19.6 1.0
N A:GLY235 2.8 12.3 1.0
CB A:SER233 3.2 11.5 1.0
CB B:SER127 3.2 15.0 1.0
CA A:GLY235 3.3 12.3 1.0
CA B:SER127 3.4 15.0 1.0
N B:GLY128 3.4 13.4 1.0
C B:SER127 3.7 15.0 1.0
N A:GLY234 3.7 11.8 1.0
N A:GLU236 3.8 12.8 1.0
PB B:ADP801 3.8 19.6 1.0
C A:GLY235 3.9 12.3 1.0
C A:GLY234 4.0 11.8 1.0
C A:SER233 4.1 11.5 1.0
CA A:SER233 4.3 11.5 1.0
CA A:GLY234 4.3 11.8 1.0
MG B:MG803 4.4 19.6 1.0
O A:GLY261 4.4 17.1 1.0
CA B:GLY128 4.5 13.4 1.0
O3A B:ADP801 4.5 19.6 1.0
O1B B:ADP801 4.6 19.6 1.0
O2B B:ADP801 4.6 19.6 1.0
NE2 B:HIS289 4.7 18.7 1.0
O B:HOH902 4.7 11.0 1.0
N B:SER127 4.7 15.0 1.0
O A:SER233 4.8 11.5 1.0
O B:SER127 4.8 15.0 1.0
CG A:GLU236 4.9 12.8 1.0
NZ B:LYS131 4.9 14.8 1.0
CE1 B:HIS289 5.0 18.7 1.0

Reference:

X.Huang, N.An, X.Zhang, P.Zhang. Cryo-Em Structure and Molecular Mechanism of the Jasmonic Acid Transporter ABCG16 To Be Published.
Page generated: Thu Oct 31 20:03:32 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy