Fluorine in PDB 8wto: Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation

Other elements in 8wto:

The structure of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation (pdb code 8wto). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation, PDB code: 8wto:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:19.6
occ:1.00
 F1 A:BEF802 0.0 19.6 1.0
BE A:BEF802 1.5 19.6 1.0
F3 A:BEF802 2.5 19.6 1.0
MG A:MG803 2.5 19.6 1.0
F2 A:BEF802 2.6 19.6 1.0
O3B A:ADP801 2.6 19.6 1.0
NE2 A:GLN172 3.0 14.6 1.0
OE1 A:GLN172 3.1 14.6 1.0
OE2 A:GLU257 3.3 17.1 1.0
N B:GLY234 3.3 11.7 1.0
N B:GLY235 3.4 12.2 1.0
O A:HOH902 3.4 10.9 1.0
CD A:GLN172 3.4 14.6 1.0
O A:HOH901 3.5 14.7 1.0
O2B A:ADP801 3.7 19.6 1.0
PB A:ADP801 3.7 19.6 1.0
CA B:GLY234 3.8 11.7 1.0
CB B:SER233 4.0 11.4 1.0
OG B:SER233 4.0 11.4 1.0
C B:GLY234 4.0 11.7 1.0
CD A:GLU257 4.2 17.1 1.0
NE2 A:HIS289 4.3 18.7 1.0
OE1 A:GLU257 4.3 17.1 1.0
C B:SER233 4.3 11.4 1.0
CA B:GLY235 4.4 12.2 1.0
CA B:SER233 4.6 11.4 1.0
O B:GLY261 4.7 17.0 1.0
OG A:SER132 4.7 13.1 1.0
CG A:GLN172 4.7 14.6 1.0
NZ A:LYS131 4.8 14.8 1.0
O3A A:ADP801 4.8 19.6 1.0
O1B A:ADP801 4.8 19.6 1.0
OG A:SER127 4.8 14.9 1.0

Fluorine binding site 2 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:19.6
occ:1.00
 F2 A:BEF802 0.0 19.6 1.0
BE A:BEF802 1.6 19.6 1.0
O3B A:ADP801 2.2 19.6 1.0
F3 A:BEF802 2.5 19.6 1.0
F1 A:BEF802 2.6 19.6 1.0
NZ A:LYS131 2.6 14.8 1.0
NE2 A:HIS289 2.9 18.7 1.0
CE1 A:HIS289 3.0 18.7 1.0
PB A:ADP801 3.3 19.6 1.0
CA A:SER127 3.4 14.9 1.0
O1B A:ADP801 3.5 19.6 1.0
OE2 A:GLU257 3.6 17.1 1.0
CE A:LYS131 3.7 14.8 1.0
O2B A:ADP801 3.8 19.6 1.0
CB A:SER127 3.9 14.9 1.0
O A:HOH901 3.9 14.7 1.0
OG A:SER127 4.0 14.9 1.0
N A:GLY128 4.0 13.3 1.0
MG A:MG803 4.0 19.6 1.0
O A:ALA126 4.2 16.6 1.0
N A:SER127 4.2 14.9 1.0
CD2 A:HIS289 4.2 18.7 1.0
C A:SER127 4.2 14.9 1.0
ND1 A:HIS289 4.3 18.7 1.0
O B:GLY261 4.4 17.0 1.0
C A:ALA126 4.5 16.6 1.0
CD A:GLU257 4.5 17.1 1.0
OG B:SER233 4.7 11.4 1.0
N B:GLY235 4.7 12.2 1.0
O3A A:ADP801 4.7 19.6 1.0
OE1 A:GLU257 4.9 17.1 1.0
CG A:HIS289 4.9 18.7 1.0
CA B:GLY235 5.0 12.2 1.0

Fluorine binding site 3 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:19.6
occ:1.00
 F3 A:BEF802 0.0 19.6 1.0
BE A:BEF802 1.5 19.6 1.0
O3B A:ADP801 2.3 19.6 1.0
OG B:SER233 2.4 11.4 1.0
OG A:SER127 2.5 14.9 1.0
F1 A:BEF802 2.5 19.6 1.0
F2 A:BEF802 2.5 19.6 1.0
N B:GLY235 2.8 12.2 1.0
CB B:SER233 3.2 11.4 1.0
CB A:SER127 3.2 14.9 1.0
CA B:GLY235 3.3 12.2 1.0
CA A:SER127 3.4 14.9 1.0
N A:GLY128 3.4 13.3 1.0
C A:SER127 3.7 14.9 1.0
N B:GLY234 3.8 11.7 1.0
N B:GLU236 3.8 12.7 1.0
PB A:ADP801 3.8 19.6 1.0
C B:GLY235 3.9 12.2 1.0
C B:GLY234 4.0 11.7 1.0
C B:SER233 4.1 11.4 1.0
CA B:SER233 4.3 11.4 1.0
CA B:GLY234 4.4 11.7 1.0
MG A:MG803 4.4 19.6 1.0
O B:GLY261 4.5 17.0 1.0
CA A:GLY128 4.5 13.3 1.0
O3A A:ADP801 4.5 19.6 1.0
O1B A:ADP801 4.6 19.6 1.0
O2B A:ADP801 4.6 19.6 1.0
NE2 A:HIS289 4.7 18.7 1.0
N A:SER127 4.7 14.9 1.0
O A:HOH902 4.7 10.9 1.0
O B:SER233 4.8 11.4 1.0
O A:SER127 4.8 14.9 1.0
CG B:GLU236 4.9 12.7 1.0
NZ A:LYS131 4.9 14.8 1.0
CE1 A:HIS289 5.0 18.7 1.0

Fluorine binding site 4 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:19.6
occ:1.00
 F1 B:BEF802 0.0 19.6 1.0
BE B:BEF802 1.5 19.6 1.0
F3 B:BEF802 2.5 19.6 1.0
MG B:MG803 2.5 19.6 1.0
F2 B:BEF802 2.6 19.6 1.0
O3B B:ADP801 2.6 19.6 1.0
NE2 B:GLN172 3.0 14.7 1.0
OE1 B:GLN172 3.1 14.7 1.0
OE2 B:GLU257 3.3 17.2 1.0
N A:GLY234 3.3 11.8 1.0
O B:HOH902 3.4 11.0 1.0
N A:GLY235 3.4 12.3 1.0
CD B:GLN172 3.4 14.7 1.0
O B:HOH901 3.5 14.7 1.0
O2B B:ADP801 3.7 19.6 1.0
PB B:ADP801 3.7 19.6 1.0
CA A:GLY234 3.8 11.8 1.0
CB A:SER233 4.0 11.5 1.0
OG A:SER233 4.0 11.5 1.0
C A:GLY234 4.0 11.8 1.0
CD B:GLU257 4.2 17.2 1.0
NE2 B:HIS289 4.3 18.7 1.0
OE1 B:GLU257 4.3 17.2 1.0
C A:SER233 4.3 11.5 1.0
CA A:GLY235 4.4 12.3 1.0
CA A:SER233 4.6 11.5 1.0
O A:GLY261 4.7 17.1 1.0
OG B:SER132 4.7 13.2 1.0
O3A B:ADP801 4.7 19.6 1.0
NZ B:LYS131 4.7 14.8 1.0
CG B:GLN172 4.7 14.7 1.0
O1B B:ADP801 4.8 19.6 1.0
OG B:SER127 4.8 15.0 1.0

Fluorine binding site 5 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:19.6
occ:1.00
 F2 B:BEF802 0.0 19.6 1.0
BE B:BEF802 1.6 19.6 1.0
O3B B:ADP801 2.2 19.6 1.0
F3 B:BEF802 2.5 19.6 1.0
F1 B:BEF802 2.6 19.6 1.0
NZ B:LYS131 2.6 14.8 1.0
NE2 B:HIS289 2.9 18.7 1.0
CE1 B:HIS289 3.0 18.7 1.0
PB B:ADP801 3.3 19.6 1.0
CA B:SER127 3.4 15.0 1.0
O1B B:ADP801 3.5 19.6 1.0
OE2 B:GLU257 3.6 17.2 1.0
CE B:LYS131 3.7 14.8 1.0
O2B B:ADP801 3.8 19.6 1.0
CB B:SER127 3.9 15.0 1.0
O B:HOH901 3.9 14.7 1.0
OG B:SER127 3.9 15.0 1.0
N B:GLY128 4.0 13.4 1.0
MG B:MG803 4.0 19.6 1.0
O B:ALA126 4.2 16.8 1.0
N B:SER127 4.2 15.0 1.0
CD2 B:HIS289 4.2 18.7 1.0
C B:SER127 4.2 15.0 1.0
ND1 B:HIS289 4.3 18.7 1.0
O A:GLY261 4.4 17.1 1.0
C B:ALA126 4.5 16.8 1.0
CD B:GLU257 4.5 17.2 1.0
OG A:SER233 4.6 11.5 1.0
N A:GLY235 4.7 12.3 1.0
O3A B:ADP801 4.7 19.6 1.0
OE1 B:GLU257 4.9 17.2 1.0
CG B:HIS289 4.9 18.7 1.0

Fluorine binding site 6 out of 6 in 8wto

Go back to Fluorine Binding Sites List in 8wto
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Jasmonic Acid Transporter ABCG16 in Outward Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:19.6
occ:1.00
 F3 B:BEF802 0.0 19.6 1.0
BE B:BEF802 1.5 19.6 1.0
O3B B:ADP801 2.4 19.6 1.0
OG B:SER127 2.4 15.0 1.0
OG A:SER233 2.4 11.5 1.0
F1 B:BEF802 2.5 19.6 1.0
F2 B:BEF802 2.5 19.6 1.0
N A:GLY235 2.8 12.3 1.0
CB A:SER233 3.2 11.5 1.0
CB B:SER127 3.2 15.0 1.0
CA A:GLY235 3.3 12.3 1.0
CA B:SER127 3.4 15.0 1.0
N B:GLY128 3.4 13.4 1.0
C B:SER127 3.7 15.0 1.0
N A:GLY234 3.7 11.8 1.0
N A:GLU236 3.8 12.8 1.0
PB B:ADP801 3.8 19.6 1.0
C A:GLY235 3.9 12.3 1.0
C A:GLY234 4.0 11.8 1.0
C A:SER233 4.1 11.5 1.0
CA A:SER233 4.3 11.5 1.0
CA A:GLY234 4.3 11.8 1.0
MG B:MG803 4.4 19.6 1.0
O A:GLY261 4.4 17.1 1.0
CA B:GLY128 4.5 13.4 1.0
O3A B:ADP801 4.5 19.6 1.0
O1B B:ADP801 4.6 19.6 1.0
O2B B:ADP801 4.6 19.6 1.0
NE2 B:HIS289 4.7 18.7 1.0
O B:HOH902 4.7 11.0 1.0
N B:SER127 4.7 15.0 1.0
O A:SER233 4.8 11.5 1.0
O B:SER127 4.8 15.0 1.0
CG A:GLU236 4.9 12.8 1.0
NZ B:LYS131 4.9 14.8 1.0
CE1 B:HIS289 5.0 18.7 1.0

Reference:

X.Huang, N.An, X.Zhang, P.Zhang. Cryo-Em Structure and Molecular Mechanism of the Jasmonic Acid Transporter ABCG16 To Be Published.
Page generated: Thu Oct 31 20:03:32 2024

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