Fluorine in PDB 9b6h: Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Fluorine atom in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
(pdb code 9b6h). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the
Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3, PDB code: 9b6h:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 1 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:102.9
occ:1.00
|
F01
|
A:T141201
|
0.0
|
102.9
|
1.0
|
C02
|
A:T141201
|
1.3
|
96.8
|
1.0
|
F33
|
A:T141201
|
2.2
|
97.7
|
1.0
|
F32
|
A:T141201
|
2.2
|
105.5
|
1.0
|
C03
|
A:T141201
|
2.4
|
95.1
|
1.0
|
HH2
|
B:TRP877
|
2.6
|
41.2
|
1.0
|
C09
|
A:T141201
|
2.9
|
100.5
|
1.0
|
C08
|
A:T141201
|
3.0
|
98.3
|
1.0
|
HD13
|
B:LEU873
|
3.1
|
55.5
|
1.0
|
C10
|
A:T141201
|
3.2
|
100.2
|
1.0
|
HZ2
|
B:TRP877
|
3.4
|
41.2
|
1.0
|
CH2
|
B:TRP877
|
3.4
|
49.1
|
1.0
|
C04
|
A:T141201
|
3.4
|
93.1
|
1.0
|
HD13
|
A:LEU860
|
3.5
|
61.3
|
1.0
|
C31
|
A:T141201
|
3.6
|
97.7
|
1.0
|
HD13
|
B:LEU971
|
3.7
|
57.9
|
1.0
|
HD22
|
A:LEU860
|
3.7
|
61.2
|
1.0
|
CZ2
|
B:TRP877
|
3.8
|
43.3
|
1.0
|
HD11
|
A:LEU860
|
3.9
|
60.0
|
1.0
|
HD21
|
A:LEU860
|
3.9
|
60.5
|
1.0
|
CD1
|
B:LEU873
|
3.9
|
54.6
|
1.0
|
HD11
|
B:LEU873
|
3.9
|
54.8
|
1.0
|
HD22
|
B:LEU974
|
4.0
|
60.4
|
1.0
|
C11
|
A:T141201
|
4.1
|
95.9
|
1.0
|
CD1
|
A:LEU860
|
4.1
|
55.3
|
1.0
|
HD12
|
B:LEU873
|
4.2
|
55.6
|
1.0
|
CD2
|
A:LEU860
|
4.2
|
53.9
|
1.0
|
C07
|
A:T141201
|
4.3
|
93.8
|
1.0
|
C30
|
A:T141201
|
4.3
|
93.2
|
1.0
|
C16
|
A:T141201
|
4.5
|
95.4
|
1.0
|
CD1
|
B:LEU971
|
4.5
|
51.1
|
1.0
|
HD23
|
B:LEU974
|
4.6
|
60.0
|
1.0
|
C05
|
A:T141201
|
4.6
|
95.4
|
1.0
|
HD12
|
B:LEU971
|
4.6
|
57.3
|
1.0
|
CZ3
|
B:TRP877
|
4.6
|
46.5
|
1.0
|
CD2
|
B:LEU974
|
4.7
|
61.4
|
1.0
|
F15
|
A:T141201
|
4.7
|
100.7
|
1.0
|
HA
|
B:LEU971
|
4.7
|
59.5
|
1.0
|
HZ3
|
B:TRP877
|
4.8
|
42.1
|
1.0
|
CG
|
A:LEU860
|
4.8
|
55.9
|
1.0
|
HD11
|
B:LEU971
|
4.9
|
57.4
|
1.0
|
HD22
|
B:LEU873
|
4.9
|
54.3
|
1.0
|
HD12
|
A:LEU860
|
4.9
|
60.8
|
1.0
|
HB3
|
A:LEU860
|
4.9
|
60.5
|
1.0
|
C06
|
A:T141201
|
4.9
|
95.0
|
1.0
|
HB2
|
B:LEU971
|
5.0
|
58.0
|
1.0
|
HD21
|
B:LEU974
|
5.0
|
61.3
|
1.0
|
|
Fluorine binding site 2 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 2 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:101.3
occ:1.00
|
F13
|
A:T141201
|
0.0
|
101.3
|
1.0
|
C12
|
A:T141201
|
1.3
|
97.6
|
1.0
|
F14
|
A:T141201
|
2.2
|
101.4
|
1.0
|
F15
|
A:T141201
|
2.2
|
100.7
|
1.0
|
C11
|
A:T141201
|
2.3
|
95.9
|
1.0
|
C10
|
A:T141201
|
3.2
|
100.2
|
1.0
|
C16
|
A:T141201
|
3.2
|
95.4
|
1.0
|
N17
|
A:T141201
|
3.7
|
100.6
|
1.0
|
C30
|
A:T141201
|
4.4
|
93.2
|
1.0
|
C09
|
A:T141201
|
4.4
|
100.5
|
1.0
|
HD13
|
A:LEU860
|
4.6
|
61.3
|
1.0
|
HD12
|
A:ILE844
|
4.8
|
65.0
|
1.0
|
HH2
|
A:TRP798
|
4.8
|
95.6
|
1.0
|
HG21
|
A:ILE844
|
4.8
|
62.8
|
1.0
|
HD13
|
A:ILE844
|
4.9
|
64.0
|
1.0
|
C18
|
A:T141201
|
4.9
|
94.7
|
1.0
|
HD12
|
A:LEU860
|
4.9
|
60.8
|
1.0
|
C31
|
A:T141201
|
5.0
|
97.7
|
1.0
|
HZ2
|
B:TRP877
|
5.0
|
41.2
|
1.0
|
|
Fluorine binding site 3 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 3 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:101.4
occ:1.00
|
F14
|
A:T141201
|
0.0
|
101.4
|
1.0
|
C12
|
A:T141201
|
1.3
|
97.6
|
1.0
|
F13
|
A:T141201
|
2.2
|
101.3
|
1.0
|
F15
|
A:T141201
|
2.2
|
100.7
|
1.0
|
C11
|
A:T141201
|
2.3
|
95.9
|
1.0
|
N17
|
A:T141201
|
2.8
|
100.6
|
1.0
|
C16
|
A:T141201
|
2.8
|
95.4
|
1.0
|
HE1
|
B:TRP877
|
3.2
|
40.5
|
1.0
|
HD13
|
A:ILE844
|
3.2
|
64.0
|
1.0
|
HD12
|
A:ILE844
|
3.2
|
65.0
|
1.0
|
HZ2
|
B:TRP877
|
3.4
|
41.2
|
1.0
|
C10
|
A:T141201
|
3.6
|
100.2
|
1.0
|
CD1
|
A:ILE844
|
3.6
|
64.5
|
1.0
|
HD11
|
A:ILE844
|
3.9
|
64.3
|
1.0
|
NE1
|
B:TRP877
|
3.9
|
40.5
|
1.0
|
C18
|
A:T141201
|
4.0
|
94.7
|
1.0
|
C30
|
A:T141201
|
4.1
|
93.2
|
1.0
|
HG21
|
A:ILE844
|
4.1
|
62.8
|
1.0
|
CZ2
|
B:TRP877
|
4.2
|
43.3
|
1.0
|
HD22
|
B:LEU873
|
4.3
|
54.3
|
1.0
|
CE2
|
B:TRP877
|
4.4
|
32.4
|
1.0
|
HD22
|
A:LEU841
|
4.5
|
62.0
|
1.0
|
C09
|
A:T141201
|
4.7
|
100.5
|
1.0
|
N29
|
A:T141201
|
4.8
|
94.5
|
1.0
|
HD21
|
B:LEU873
|
4.8
|
55.1
|
1.0
|
N20
|
A:T141201
|
4.8
|
99.9
|
1.0
|
C19
|
A:T141201
|
4.8
|
94.2
|
1.0
|
HD13
|
A:LEU860
|
4.9
|
61.3
|
1.0
|
C31
|
A:T141201
|
4.9
|
97.7
|
1.0
|
CG1
|
A:ILE844
|
5.0
|
57.4
|
1.0
|
CD2
|
B:LEU873
|
5.0
|
50.2
|
1.0
|
|
Fluorine binding site 4 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 4 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:100.7
occ:1.00
|
F15
|
A:T141201
|
0.0
|
100.7
|
1.0
|
C12
|
A:T141201
|
1.3
|
97.6
|
1.0
|
F13
|
A:T141201
|
2.2
|
101.3
|
1.0
|
F14
|
A:T141201
|
2.2
|
101.4
|
1.0
|
C11
|
A:T141201
|
2.3
|
95.9
|
1.0
|
C10
|
A:T141201
|
2.8
|
100.2
|
1.0
|
HD13
|
A:LEU860
|
2.9
|
61.3
|
1.0
|
HD12
|
A:LEU860
|
3.1
|
60.8
|
1.0
|
CD1
|
A:LEU860
|
3.4
|
55.3
|
1.0
|
C16
|
A:T141201
|
3.6
|
95.4
|
1.0
|
HG21
|
A:ILE844
|
3.7
|
62.8
|
1.0
|
HD11
|
A:LEU860
|
3.7
|
60.0
|
1.0
|
HD13
|
A:ILE844
|
3.7
|
64.0
|
1.0
|
HZ2
|
B:TRP877
|
3.9
|
41.2
|
1.0
|
HD21
|
B:LEU873
|
4.1
|
55.1
|
1.0
|
C09
|
A:T141201
|
4.2
|
100.5
|
1.0
|
HD22
|
B:LEU873
|
4.3
|
54.3
|
1.0
|
N17
|
A:T141201
|
4.3
|
100.6
|
1.0
|
HD12
|
A:ILE844
|
4.3
|
65.0
|
1.0
|
CD1
|
A:ILE844
|
4.5
|
64.5
|
1.0
|
HB3
|
A:LEU860
|
4.6
|
60.5
|
1.0
|
CG2
|
A:ILE844
|
4.6
|
57.5
|
1.0
|
HB2
|
A:LEU860
|
4.7
|
61.0
|
1.0
|
CD2
|
B:LEU873
|
4.7
|
50.2
|
1.0
|
C30
|
A:T141201
|
4.7
|
93.2
|
1.0
|
F01
|
A:T141201
|
4.7
|
102.9
|
1.0
|
CG
|
A:LEU860
|
4.7
|
55.9
|
1.0
|
HE1
|
B:TRP877
|
4.8
|
40.5
|
1.0
|
HG22
|
A:ILE844
|
4.8
|
63.8
|
1.0
|
CZ2
|
B:TRP877
|
4.9
|
43.3
|
1.0
|
CB
|
A:LEU860
|
4.9
|
53.2
|
1.0
|
HG23
|
A:ILE857
|
4.9
|
61.2
|
1.0
|
C31
|
A:T141201
|
5.0
|
97.7
|
1.0
|
|
Fluorine binding site 5 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 5 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:105.5
occ:1.00
|
F32
|
A:T141201
|
0.0
|
105.5
|
1.0
|
C02
|
A:T141201
|
1.3
|
96.8
|
1.0
|
F33
|
A:T141201
|
2.2
|
97.7
|
1.0
|
F01
|
A:T141201
|
2.2
|
102.9
|
1.0
|
C03
|
A:T141201
|
2.3
|
95.1
|
1.0
|
HH2
|
B:TRP877
|
2.5
|
41.2
|
1.0
|
C31
|
A:T141201
|
2.9
|
97.7
|
1.0
|
C08
|
A:T141201
|
3.0
|
98.3
|
1.0
|
C09
|
A:T141201
|
3.1
|
100.5
|
1.0
|
HB2
|
B:LEU970
|
3.1
|
51.1
|
1.0
|
CH2
|
B:TRP877
|
3.3
|
49.1
|
1.0
|
HB3
|
B:LEU970
|
3.3
|
49.9
|
1.0
|
C04
|
A:T141201
|
3.4
|
93.1
|
1.0
|
HD12
|
B:LEU970
|
3.6
|
48.7
|
1.0
|
CB
|
B:LEU970
|
3.7
|
44.0
|
1.0
|
HD13
|
B:LEU970
|
3.8
|
48.5
|
1.0
|
HB3
|
B:SER966
|
3.9
|
58.6
|
1.0
|
C30
|
A:T141201
|
3.9
|
93.2
|
1.0
|
HD13
|
B:LEU971
|
4.0
|
57.9
|
1.0
|
HZ3
|
B:TRP877
|
4.0
|
42.1
|
1.0
|
HZ2
|
B:TRP877
|
4.1
|
41.2
|
1.0
|
HB2
|
B:LEU971
|
4.1
|
58.0
|
1.0
|
O
|
B:SER966
|
4.1
|
61.5
|
1.0
|
C10
|
A:T141201
|
4.1
|
100.2
|
1.0
|
CZ3
|
B:TRP877
|
4.1
|
46.5
|
1.0
|
CD1
|
B:LEU970
|
4.1
|
32.3
|
1.0
|
HA
|
B:SER966
|
4.1
|
58.4
|
1.0
|
CZ2
|
B:TRP877
|
4.1
|
43.3
|
1.0
|
HA
|
B:LEU971
|
4.2
|
59.5
|
1.0
|
H
|
B:LEU971
|
4.3
|
55.2
|
1.0
|
N
|
B:LEU971
|
4.3
|
41.2
|
1.0
|
C07
|
A:T141201
|
4.3
|
93.8
|
1.0
|
CG
|
B:LEU970
|
4.5
|
42.5
|
1.0
|
C
|
B:LEU970
|
4.5
|
51.4
|
1.0
|
C05
|
A:T141201
|
4.6
|
95.4
|
1.0
|
CA
|
B:LEU971
|
4.6
|
51.2
|
1.0
|
CB
|
B:SER966
|
4.7
|
51.2
|
1.0
|
C16
|
A:T141201
|
4.7
|
95.4
|
1.0
|
N29
|
A:T141201
|
4.7
|
94.5
|
1.0
|
CA
|
B:SER966
|
4.7
|
41.0
|
1.0
|
CA
|
B:LEU970
|
4.7
|
40.0
|
1.0
|
HD13
|
B:LEU873
|
4.8
|
55.5
|
1.0
|
CB
|
B:LEU971
|
4.8
|
55.1
|
1.0
|
C
|
B:SER966
|
4.8
|
48.2
|
1.0
|
C11
|
A:T141201
|
4.8
|
95.9
|
1.0
|
CD1
|
B:LEU971
|
4.9
|
51.1
|
1.0
|
HD22
|
B:LEU974
|
4.9
|
60.4
|
1.0
|
C06
|
A:T141201
|
4.9
|
95.0
|
1.0
|
|
Fluorine binding site 6 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 6 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1201
b:97.7
occ:1.00
|
F33
|
A:T141201
|
0.0
|
97.7
|
1.0
|
C02
|
A:T141201
|
1.3
|
96.8
|
1.0
|
F01
|
A:T141201
|
2.2
|
102.9
|
1.0
|
F32
|
A:T141201
|
2.2
|
105.5
|
1.0
|
C03
|
A:T141201
|
2.3
|
95.1
|
1.0
|
C04
|
A:T141201
|
2.6
|
93.1
|
1.0
|
HD22
|
B:LEU974
|
2.8
|
60.4
|
1.0
|
HA
|
B:LEU971
|
3.1
|
59.5
|
1.0
|
HD13
|
B:LEU971
|
3.3
|
57.9
|
1.0
|
HB3
|
B:LEU970
|
3.5
|
49.9
|
1.0
|
HD23
|
B:LEU974
|
3.5
|
60.0
|
1.0
|
CD2
|
B:LEU974
|
3.6
|
61.4
|
1.0
|
C08
|
A:T141201
|
3.6
|
98.3
|
1.0
|
HH2
|
B:TRP877
|
3.6
|
41.2
|
1.0
|
HB2
|
B:LEU974
|
3.7
|
58.6
|
1.0
|
HD12
|
B:LEU971
|
3.7
|
57.3
|
1.0
|
CA
|
B:LEU971
|
3.9
|
51.2
|
1.0
|
HB2
|
B:LEU970
|
3.9
|
51.1
|
1.0
|
N
|
B:LEU971
|
4.0
|
41.2
|
1.0
|
CD1
|
B:LEU971
|
4.0
|
51.1
|
1.0
|
C
|
B:LEU970
|
4.0
|
51.4
|
1.0
|
C05
|
A:T141201
|
4.0
|
95.4
|
1.0
|
HB3
|
B:LEU974
|
4.0
|
58.4
|
1.0
|
O
|
B:LEU970
|
4.0
|
71.1
|
1.0
|
HD22
|
A:LEU860
|
4.1
|
61.2
|
1.0
|
HB2
|
B:LEU971
|
4.1
|
58.0
|
1.0
|
CB
|
B:LEU970
|
4.2
|
44.0
|
1.0
|
CB
|
B:LEU974
|
4.2
|
47.3
|
1.0
|
HD21
|
B:LEU974
|
4.2
|
61.3
|
1.0
|
C09
|
A:T141201
|
4.3
|
100.5
|
1.0
|
HD21
|
A:LEU860
|
4.3
|
60.5
|
1.0
|
H
|
B:LEU971
|
4.4
|
55.2
|
1.0
|
HD13
|
B:LEU873
|
4.4
|
55.5
|
1.0
|
CB
|
B:LEU971
|
4.5
|
55.1
|
1.0
|
CG
|
B:LEU974
|
4.5
|
61.9
|
1.0
|
CH2
|
B:TRP877
|
4.6
|
49.1
|
1.0
|
HD13
|
B:LEU974
|
4.6
|
58.3
|
1.0
|
CD2
|
A:LEU860
|
4.7
|
53.9
|
1.0
|
HD11
|
B:LEU971
|
4.7
|
57.4
|
1.0
|
CA
|
B:LEU970
|
4.7
|
40.0
|
1.0
|
C07
|
A:T141201
|
4.7
|
93.8
|
1.0
|
C31
|
A:T141201
|
4.7
|
97.7
|
1.0
|
HE2
|
A:PHE979
|
4.9
|
44.1
|
1.0
|
C06
|
A:T141201
|
4.9
|
95.0
|
1.0
|
CG
|
B:LEU971
|
4.9
|
60.4
|
1.0
|
HD13
|
B:LEU970
|
4.9
|
48.5
|
1.0
|
HD12
|
B:LEU873
|
4.9
|
55.6
|
1.0
|
|
Fluorine binding site 7 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 7 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1201
b:102.9
occ:1.00
|
F01
|
B:T141201
|
0.0
|
102.9
|
1.0
|
C02
|
B:T141201
|
1.3
|
96.8
|
1.0
|
F33
|
B:T141201
|
2.2
|
97.7
|
1.0
|
F32
|
B:T141201
|
2.2
|
105.5
|
1.0
|
C03
|
B:T141201
|
2.4
|
95.1
|
1.0
|
HH2
|
C:TRP877
|
2.8
|
41.2
|
1.0
|
C09
|
B:T141201
|
2.9
|
100.5
|
1.0
|
C08
|
B:T141201
|
3.0
|
98.3
|
1.0
|
C10
|
B:T141201
|
3.2
|
100.2
|
1.0
|
HD13
|
C:LEU873
|
3.4
|
55.5
|
1.0
|
C04
|
B:T141201
|
3.4
|
93.1
|
1.0
|
HD13
|
B:LEU860
|
3.5
|
61.3
|
1.0
|
HD13
|
C:LEU971
|
3.5
|
57.9
|
1.0
|
HD22
|
C:LEU974
|
3.6
|
60.4
|
1.0
|
C31
|
B:T141201
|
3.6
|
97.7
|
1.0
|
HD22
|
B:LEU860
|
3.7
|
61.2
|
1.0
|
CH2
|
C:TRP877
|
3.7
|
49.1
|
1.0
|
HZ2
|
C:TRP877
|
3.9
|
41.2
|
1.0
|
HD11
|
B:LEU860
|
3.9
|
60.0
|
1.0
|
HD21
|
B:LEU860
|
3.9
|
60.5
|
1.0
|
C11
|
B:T141201
|
4.1
|
95.9
|
1.0
|
CD1
|
B:LEU860
|
4.1
|
55.3
|
1.0
|
CD1
|
C:LEU873
|
4.1
|
54.6
|
1.0
|
HD11
|
C:LEU873
|
4.1
|
54.8
|
1.0
|
CZ2
|
C:TRP877
|
4.2
|
43.3
|
1.0
|
CD2
|
B:LEU860
|
4.2
|
53.9
|
1.0
|
HD23
|
C:LEU974
|
4.2
|
60.0
|
1.0
|
C07
|
B:T141201
|
4.3
|
93.8
|
1.0
|
C30
|
B:T141201
|
4.3
|
93.2
|
1.0
|
CD2
|
C:LEU974
|
4.3
|
61.4
|
1.0
|
HA
|
C:LEU971
|
4.3
|
59.5
|
1.0
|
HD12
|
C:LEU873
|
4.3
|
55.6
|
1.0
|
CD1
|
C:LEU971
|
4.4
|
51.1
|
1.0
|
HD12
|
C:LEU971
|
4.4
|
57.3
|
1.0
|
C16
|
B:T141201
|
4.5
|
95.4
|
1.0
|
C05
|
B:T141201
|
4.6
|
95.4
|
1.0
|
HB3
|
C:LEU970
|
4.6
|
49.9
|
1.0
|
HD21
|
C:LEU974
|
4.7
|
61.3
|
1.0
|
F15
|
B:T141201
|
4.7
|
100.7
|
1.0
|
HB2
|
C:LEU971
|
4.8
|
58.0
|
1.0
|
CG
|
B:LEU860
|
4.8
|
55.9
|
1.0
|
CZ3
|
C:TRP877
|
4.8
|
46.5
|
1.0
|
HD11
|
C:LEU971
|
4.8
|
57.4
|
1.0
|
HB2
|
C:LEU970
|
4.8
|
51.1
|
1.0
|
HZ3
|
C:TRP877
|
4.8
|
42.1
|
1.0
|
HD12
|
B:LEU860
|
4.9
|
60.8
|
1.0
|
HB3
|
B:LEU860
|
4.9
|
60.5
|
1.0
|
C06
|
B:T141201
|
4.9
|
95.0
|
1.0
|
|
Fluorine binding site 8 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 8 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1201
b:101.3
occ:1.00
|
F13
|
B:T141201
|
0.0
|
101.3
|
1.0
|
C12
|
B:T141201
|
1.3
|
97.6
|
1.0
|
F14
|
B:T141201
|
2.2
|
101.4
|
1.0
|
F15
|
B:T141201
|
2.2
|
100.7
|
1.0
|
C11
|
B:T141201
|
2.3
|
95.9
|
1.0
|
C10
|
B:T141201
|
3.2
|
100.2
|
1.0
|
C16
|
B:T141201
|
3.2
|
95.4
|
1.0
|
N17
|
B:T141201
|
3.7
|
100.6
|
1.0
|
C30
|
B:T141201
|
4.4
|
93.2
|
1.0
|
C09
|
B:T141201
|
4.4
|
100.5
|
1.0
|
HD13
|
B:LEU860
|
4.6
|
61.3
|
1.0
|
HZ2
|
C:TRP877
|
4.8
|
41.2
|
1.0
|
HD12
|
B:ILE844
|
4.8
|
65.0
|
1.0
|
HH2
|
B:TRP798
|
4.8
|
95.6
|
1.0
|
HG21
|
B:ILE844
|
4.8
|
62.8
|
1.0
|
HD13
|
B:ILE844
|
4.9
|
64.0
|
1.0
|
C18
|
B:T141201
|
4.9
|
94.7
|
1.0
|
HD12
|
B:LEU860
|
4.9
|
60.8
|
1.0
|
C31
|
B:T141201
|
5.0
|
97.7
|
1.0
|
|
Fluorine binding site 9 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 9 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1201
b:101.4
occ:1.00
|
F14
|
B:T141201
|
0.0
|
101.4
|
1.0
|
C12
|
B:T141201
|
1.3
|
97.6
|
1.0
|
F13
|
B:T141201
|
2.2
|
101.3
|
1.0
|
F15
|
B:T141201
|
2.2
|
100.7
|
1.0
|
C11
|
B:T141201
|
2.3
|
95.9
|
1.0
|
N17
|
B:T141201
|
2.8
|
100.6
|
1.0
|
C16
|
B:T141201
|
2.8
|
95.4
|
1.0
|
HZ2
|
C:TRP877
|
3.1
|
41.2
|
1.0
|
HD13
|
B:ILE844
|
3.2
|
64.0
|
1.0
|
HD12
|
B:ILE844
|
3.2
|
65.0
|
1.0
|
HE1
|
C:TRP877
|
3.2
|
40.5
|
1.0
|
C10
|
B:T141201
|
3.6
|
100.2
|
1.0
|
CD1
|
B:ILE844
|
3.6
|
64.5
|
1.0
|
CZ2
|
C:TRP877
|
3.9
|
43.3
|
1.0
|
HD11
|
B:ILE844
|
3.9
|
64.3
|
1.0
|
NE1
|
C:TRP877
|
3.9
|
40.5
|
1.0
|
C18
|
B:T141201
|
4.0
|
94.7
|
1.0
|
C30
|
B:T141201
|
4.1
|
93.2
|
1.0
|
HG21
|
B:ILE844
|
4.1
|
62.8
|
1.0
|
HD22
|
C:LEU873
|
4.2
|
54.3
|
1.0
|
CE2
|
C:TRP877
|
4.3
|
32.4
|
1.0
|
HD22
|
B:LEU841
|
4.5
|
62.0
|
1.0
|
HD21
|
C:LEU873
|
4.7
|
55.1
|
1.0
|
C09
|
B:T141201
|
4.7
|
100.5
|
1.0
|
N29
|
B:T141201
|
4.8
|
94.5
|
1.0
|
N20
|
B:T141201
|
4.8
|
99.9
|
1.0
|
C19
|
B:T141201
|
4.8
|
94.2
|
1.0
|
HD13
|
B:LEU860
|
4.9
|
61.3
|
1.0
|
CD2
|
C:LEU873
|
4.9
|
50.2
|
1.0
|
C31
|
B:T141201
|
4.9
|
97.7
|
1.0
|
CG1
|
B:ILE844
|
5.0
|
57.4
|
1.0
|
|
Fluorine binding site 10 out
of 24 in 9b6h
Go back to
Fluorine Binding Sites List in 9b6h
Fluorine binding site 10 out
of 24 in the Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Cryo-Em Structure of the Mouse TRPM8 Channel in Complex with the Antagonist Tc-I 2014 and the Cooling Agonist C3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1201
b:100.7
occ:1.00
|
F15
|
B:T141201
|
0.0
|
100.7
|
1.0
|
C12
|
B:T141201
|
1.3
|
97.6
|
1.0
|
F13
|
B:T141201
|
2.2
|
101.3
|
1.0
|
F14
|
B:T141201
|
2.2
|
101.4
|
1.0
|
C11
|
B:T141201
|
2.3
|
95.9
|
1.0
|
C10
|
B:T141201
|
2.8
|
100.2
|
1.0
|
HD13
|
B:LEU860
|
2.9
|
61.3
|
1.0
|
HD12
|
B:LEU860
|
3.1
|
60.8
|
1.0
|
CD1
|
B:LEU860
|
3.4
|
55.3
|
1.0
|
C16
|
B:T141201
|
3.6
|
95.4
|
1.0
|
HG21
|
B:ILE844
|
3.7
|
62.8
|
1.0
|
HD11
|
B:LEU860
|
3.7
|
60.0
|
1.0
|
HD13
|
B:ILE844
|
3.7
|
64.0
|
1.0
|
HZ2
|
C:TRP877
|
3.8
|
41.2
|
1.0
|
HD21
|
C:LEU873
|
4.1
|
55.1
|
1.0
|
C09
|
B:T141201
|
4.2
|
100.5
|
1.0
|
N17
|
B:T141201
|
4.3
|
100.6
|
1.0
|
HD12
|
B:ILE844
|
4.3
|
65.0
|
1.0
|
HD22
|
C:LEU873
|
4.4
|
54.3
|
1.0
|
CD1
|
B:ILE844
|
4.5
|
64.5
|
1.0
|
HB3
|
B:LEU860
|
4.6
|
60.5
|
1.0
|
CG2
|
B:ILE844
|
4.6
|
57.5
|
1.0
|
HB2
|
B:LEU860
|
4.7
|
61.0
|
1.0
|
C30
|
B:T141201
|
4.7
|
93.2
|
1.0
|
F01
|
B:T141201
|
4.7
|
102.9
|
1.0
|
CZ2
|
C:TRP877
|
4.7
|
43.3
|
1.0
|
CD2
|
C:LEU873
|
4.7
|
50.2
|
1.0
|
CG
|
B:LEU860
|
4.7
|
55.9
|
1.0
|
HD13
|
C:LEU873
|
4.8
|
55.5
|
1.0
|
HD11
|
C:LEU873
|
4.8
|
54.8
|
1.0
|
HG22
|
B:ILE844
|
4.8
|
63.8
|
1.0
|
CB
|
B:LEU860
|
4.9
|
53.2
|
1.0
|
HE1
|
C:TRP877
|
4.9
|
40.5
|
1.0
|
HG23
|
B:ILE857
|
4.9
|
61.2
|
1.0
|
C31
|
B:T141201
|
5.0
|
97.7
|
1.0
|
|
Reference:
Y.Yin,
C.G.Park,
F.Zhang,
J.G Fedor,
S.Feng,
Y.Suo,
W.Im,
S.Y.Lee.
Mechanisms of Sensory Adaptation and Inhibition of the Cold and Menthol Receptor TRPM8. Sci Adv V. 10 P2211 2024.
ISSN: ESSN 2375-2548
PubMed: 39093967
DOI: 10.1126/SCIADV.ADP2211
Page generated: Sat Sep 28 20:44:01 2024
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