Fluorine in PDB 9gd3: Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna.

The structure of Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. (pdb code 9gd3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna., PDB code: 9gd3:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. within 5.0Å range: probe atom residue distance (Å) B Occ W:F1502 b:12.7 occ:1.00 F1 W:BEF1502 0.0 12.7 1.0 BE W:BEF1502 1.5 12.7 1.0 F3 W:BEF1502 2.4 12.7 1.0 F2 W:BEF1502 2.4 12.7 1.0 NH2 W:ARG804 2.4 3.0 1.0 NH1 W:ARG807 2.7 12.9 1.0 NH1 W:ARG804 2.7 3.0 1.0 O2B W:ADP1501 2.8 4.4 1.0 CZ W:ARG804 2.9 3.0 1.0 NH2 W:ARG807 3.1 12.9 1.0 CZ W:ARG807 3.3 12.9 1.0 N W:GLY404 3.3 4.3 1.0 CB W:MET403 3.5 4.6 1.0 C W:MET403 3.8 4.6 1.0 PB W:ADP1501 3.9 4.4 1.0 CA W:MET403 3.9 4.6 1.0 O3A W:ADP1501 4.0 4.4 1.0 CA W:GLY404 4.0 4.3 1.0 O1B W:ADP1501 4.2 4.4 1.0 CG W:MET403 4.2 4.6 1.0 NE W:ARG804 4.2 3.0 1.0 OE1 W:GLN800 4.4 6.3 1.0 NE W:ARG807 4.5 12.9 1.0 CA W:GLY777 4.6 4.6 1.0 CB W:ALA803 4.7 5.7 1.0 O W:MET403 4.7 4.6 1.0 N W:GLY777 4.8 4.6 1.0

Fluorine binding site 2 out of 3 in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. within 5.0Å range: probe atom residue distance (Å) B Occ W:F1502 b:12.7 occ:1.00 F2 W:BEF1502 0.0 12.7 1.0 BE W:BEF1502 1.5 12.7 1.0 F3 W:BEF1502 2.3 12.7 1.0 F1 W:BEF1502 2.4 12.7 1.0 O2B W:ADP1501 2.8 4.4 1.0 CG W:MET403 3.1 4.6 1.0 CB W:MET403 3.1 4.6 1.0 CA W:MET403 3.3 4.6 1.0 NH2 W:ARG804 3.4 3.0 1.0 NZ W:LYS407 3.5 3.3 1.0 OE1 W:GLN800 3.8 6.3 1.0 N W:GLY404 3.9 4.3 1.0 O1B W:ADP1501 3.9 4.4 1.0 PB W:ADP1501 3.9 4.4 1.0 C W:MET403 4.1 4.6 1.0 CE W:LYS407 4.2 3.3 1.0 NE2 W:GLN800 4.3 6.3 1.0 OE2 W:GLU514 4.3 7.5 1.0 CZ W:ARG804 4.4 3.0 1.0 CD W:GLN800 4.5 6.3 1.0 N W:MET403 4.5 4.6 1.0 MG W:MG1503 4.5 7.5 1.0 OE1 W:GLU514 4.6 7.5 1.0 NH1 W:ARG804 4.6 3.0 1.0 N W:GLY542 4.6 4.2 1.0 SD W:MET403 4.7 4.6 1.0 CA W:GLY542 4.8 4.2 1.0 O3A W:ADP1501 4.9 4.4 1.0 CD W:GLU514 4.9 7.5 1.0 NH1 W:ARG807 4.9 12.9 1.0

Fluorine binding site 3 out of 3 in the Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of A Mononucleosome Bound By One Copy of CHD1 with the Dbd on the Exit-Side Dna. within 5.0Å range: probe atom residue distance (Å) B Occ W:F1502 b:12.7 occ:1.00 F3 W:BEF1502 0.0 12.7 1.0 BE W:BEF1502 1.5 12.7 1.0 F2 W:BEF1502 2.3 12.7 1.0 F1 W:BEF1502 2.4 12.7 1.0 O1B W:ADP1501 2.5 4.4 1.0 O2B W:ADP1501 2.8 4.4 1.0 PB W:ADP1501 3.1 4.4 1.0 MG W:MG1503 3.3 7.5 1.0 OE2 W:GLU514 3.4 7.5 1.0 CA W:GLY777 3.6 4.6 1.0 O3A W:ADP1501 3.6 4.4 1.0 NH2 W:ARG804 3.7 3.0 1.0 NH1 W:ARG804 3.8 3.0 1.0 N W:GLY777 4.1 4.6 1.0 NH2 W:ARG807 4.1 12.9 1.0 CZ W:ARG804 4.1 3.0 1.0 CD W:GLU514 4.4 7.5 1.0 O3B W:ADP1501 4.6 4.4 1.0 C W:GLY777 4.7 4.6 1.0 OE1 W:GLU514 4.7 7.5 1.0 NH1 W:ARG807 4.7 12.9 1.0 NZ W:LYS407 4.8 3.3 1.0 N W:GLY404 4.8 4.3 1.0 CZ W:ARG807 4.8 12.9 1.0 OE1 W:GLN800 4.9 6.3 1.0 O W:GLY777 4.9 4.6 1.0

M.Engeholm, J.J.Roske, E.Oberbeckmann, C.Dienemann, M.Lidschreiber, P.Cramer, L.Farnung. Resolution of Transcription-Induced Hexasome-Nucleosome Complexes By CHD1 and Fact. Mol.Cell 2024.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2024.08.022