Atomistry » Fluorine » PDB 9boo-9j9k » 9irp
Atomistry »
  Fluorine »
    PDB 9boo-9j9k »
      9irp »

Fluorine in PDB 9irp: Structure of Clpp From Staphylococcus Aureus in Complex with ZG297

Enzymatic activity of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297

All present enzymatic activity of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297:
3.4.21.92;

Protein crystallography data

The structure of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297, PDB code: 9irp was solved by B.Y.Wei, P.Y.Wang, T.Zhang, C.-G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.581, 190.32, 96.401, 90, 117.8, 90
R / Rfree (%) 17.3 / 20.8

Other elements in 9irp:

The structure of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 also contains other interesting chemical elements:

Magnesium (Mg) 12 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Fluorine atom in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 (pdb code 9irp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 42 binding sites of Fluorine where determined in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297, PDB code: 9irp:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 1 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:18.9
occ:1.00
F40 A:Z53301 0.0 18.9 1.0
C38 A:Z53301 1.3 19.8 1.0
F41 A:Z53301 2.1 20.2 1.0
F42 A:Z53301 2.2 21.4 1.0
C37 A:Z53301 2.3 15.1 1.0
CD1 A:LEU24 3.3 9.8 1.0
CA G:PHE50 3.3 15.0 1.0
N G:PHE50 3.4 14.4 1.0
C36 A:Z53301 3.5 16.9 1.0
CG A:LEU24 3.7 10.6 1.0
C G:LEU49 3.8 14.7 1.0
CB G:PHE50 3.8 17.1 1.0
CD2 G:LEU49 3.8 10.7 1.0
CG G:LEU49 3.9 13.4 1.0
O G:LEU49 4.0 12.8 1.0
CB G:LEU49 4.2 12.3 1.0
CD1 G:PHE50 4.5 17.1 1.0
O G:SER46 4.5 12.5 1.0
CD2 A:LEU24 4.6 9.5 1.0
CA G:LEU49 4.6 13.1 1.0
CG G:PHE50 4.6 18.4 1.0
CD1 A:ILE29 4.7 16.0 1.0
C G:PHE50 4.7 14.7 1.0
C35 A:Z53301 4.7 16.0 1.0
CA A:LEU24 4.9 13.3 1.0
CB A:LEU24 4.9 10.9 1.0
CB G:ALA53 4.9 13.1 1.0
O1 A:Z53301 4.9 15.6 1.0

Fluorine binding site 2 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 2 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:20.2
occ:1.00
F41 A:Z53301 0.0 20.2 1.0
C38 A:Z53301 1.3 19.8 1.0
F42 A:Z53301 2.1 21.4 1.0
F40 A:Z53301 2.1 18.9 1.0
C37 A:Z53301 2.3 15.1 1.0
C36 A:Z53301 2.8 16.9 1.0
CD1 G:PHE50 3.6 17.1 1.0
CA G:PHE50 3.7 15.0 1.0
CB G:ALA53 3.8 13.1 1.0
CZ A:ARG23 3.9 19.5 1.0
NH1 A:ARG23 3.9 19.2 1.0
NH2 A:ARG23 3.9 17.1 1.0
CB G:PHE50 4.1 17.1 1.0
C35 A:Z53301 4.3 16.0 1.0
CG G:PHE50 4.3 18.4 1.0
O G:PHE50 4.4 15.2 1.0
NE A:ARG23 4.5 18.5 1.0
CE1 G:PHE50 4.5 16.9 1.0
N G:PHE50 4.5 14.4 1.0
C G:PHE50 4.6 14.7 1.0
CG A:ARG23 4.6 17.1 1.0
O G:LEU49 4.6 12.8 1.0
CD1 A:LEU24 4.7 9.8 1.0
C G:LEU49 4.8 14.7 1.0
OD1 A:ASP27 4.9 22.8 1.0

Fluorine binding site 3 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 3 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:21.4
occ:1.00
F42 A:Z53301 0.0 21.4 1.0
C38 A:Z53301 1.3 19.8 1.0
F41 A:Z53301 2.1 20.2 1.0
F40 A:Z53301 2.2 18.9 1.0
C37 A:Z53301 2.3 15.1 1.0
C36 A:Z53301 3.1 16.9 1.0
NH2 A:ARG23 3.5 17.1 1.0
CA A:LEU24 3.7 13.3 1.0
CD1 A:LEU24 3.7 9.8 1.0
CG A:LEU24 3.8 10.6 1.0
O A:ARG23 3.9 15.4 1.0
CB A:ASP27 4.0 17.2 1.0
CG A:ASP27 4.2 23.2 1.0
CD1 A:ILE29 4.2 16.0 1.0
CZ A:ARG23 4.2 19.5 1.0
OD1 A:ASP27 4.2 22.8 1.0
N A:LEU24 4.2 13.4 1.0
C A:ARG23 4.3 14.9 1.0
CB A:LEU24 4.3 10.9 1.0
CG A:ARG23 4.4 17.1 1.0
C35 A:Z53301 4.4 16.0 1.0
O A:LEU24 4.5 19.9 1.0
C A:LEU24 4.6 16.2 1.0
NH1 A:ARG23 4.6 19.2 1.0
N34 A:Z53301 4.7 16.3 1.0
NE A:ARG23 4.9 18.5 1.0
OD2 A:ASP27 4.9 26.4 1.0

Fluorine binding site 4 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 4 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:24.7
occ:1.00
F40 B:Z53301 0.0 24.7 1.0
C38 B:Z53301 1.3 26.6 1.0
F42 B:Z53301 2.2 26.5 1.0
F41 B:Z53301 2.2 24.7 1.0
C37 B:Z53301 2.3 25.3 1.0
CD1 B:LEU24 3.2 12.0 1.0
CA A:PHE50 3.5 15.3 1.0
N A:PHE50 3.5 15.9 1.0
C36 B:Z53301 3.5 25.2 1.0
CG B:LEU24 3.6 25.1 1.0
C A:LEU49 3.8 18.4 1.0
CD2 A:LEU49 3.8 17.7 1.0
CB A:PHE50 3.9 14.2 1.0
CG A:LEU49 3.9 18.3 1.0
O A:LEU49 3.9 16.8 1.0
CB A:LEU49 4.2 17.9 1.0
CD1 A:PHE50 4.5 21.4 1.0
O A:SER46 4.5 16.3 1.0
CD2 B:LEU24 4.6 23.9 1.0
CA A:LEU49 4.6 19.1 1.0
CG A:PHE50 4.7 19.2 1.0
C35 B:Z53301 4.7 23.7 1.0
CA B:LEU24 4.7 20.9 1.0
CB B:LEU24 4.7 19.8 1.0
CD1 B:ILE29 4.8 20.5 1.0
C A:PHE50 4.8 17.6 1.0
CB A:ALA53 5.0 15.6 1.0

Fluorine binding site 5 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 5 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:24.7
occ:1.00
F41 B:Z53301 0.0 24.7 1.0
C38 B:Z53301 1.3 26.6 1.0
F42 B:Z53301 2.2 26.5 1.0
F40 B:Z53301 2.2 24.7 1.0
C37 B:Z53301 2.3 25.3 1.0
C36 B:Z53301 2.9 25.2 1.0
CD1 A:PHE50 3.7 21.4 1.0
CA A:PHE50 3.8 15.3 1.0
NH1 B:ARG23 3.9 33.1 1.0
CB A:ALA53 3.9 15.6 1.0
CZ B:ARG23 3.9 31.6 1.0
NH2 B:ARG23 4.0 30.6 1.0
O B:HOH425 4.1 43.4 1.0
CB A:PHE50 4.2 14.2 1.0
C35 B:Z53301 4.3 23.7 1.0
CG A:PHE50 4.4 19.2 1.0
NE B:ARG23 4.5 29.0 1.0
CE1 A:PHE50 4.5 24.1 1.0
O A:PHE50 4.6 17.6 1.0
O A:LEU49 4.6 16.8 1.0
OD1 B:ASP27 4.6 31.7 1.0
N A:PHE50 4.6 15.9 1.0
CG B:ARG23 4.6 22.1 1.0
C A:PHE50 4.7 17.6 1.0
CD1 B:LEU24 4.7 12.0 1.0
C A:LEU49 4.9 18.4 1.0

Fluorine binding site 6 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 6 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:26.5
occ:1.00
F42 B:Z53301 0.0 26.5 1.0
C38 B:Z53301 1.3 26.6 1.0
F41 B:Z53301 2.2 24.7 1.0
F40 B:Z53301 2.2 24.7 1.0
C37 B:Z53301 2.4 25.3 1.0
C36 B:Z53301 3.0 25.2 1.0
CA B:LEU24 3.6 20.9 1.0
NH2 B:ARG23 3.7 30.6 1.0
CD1 B:LEU24 3.8 12.0 1.0
CG B:LEU24 3.8 25.1 1.0
OD1 B:ASP27 3.9 31.7 1.0
O B:ARG23 3.9 21.3 1.0
CB B:ASP27 3.9 28.7 1.0
CD1 B:ILE29 4.2 20.5 1.0
CG B:ASP27 4.2 31.1 1.0
N B:LEU24 4.2 17.4 1.0
CB B:LEU24 4.2 19.8 1.0
CZ B:ARG23 4.2 31.6 1.0
C B:ARG23 4.3 19.1 1.0
O B:LEU24 4.4 20.3 1.0
C35 B:Z53301 4.4 23.7 1.0
C B:LEU24 4.5 20.5 1.0
CG B:ARG23 4.5 22.1 1.0
NH1 B:ARG23 4.6 33.1 1.0
O B:HOH425 4.7 43.4 1.0
N34 B:Z53301 4.8 23.1 1.0
NE B:ARG23 5.0 29.0 1.0

Fluorine binding site 7 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 7 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F301

b:30.7
occ:1.00
F40 C:Z53301 0.0 30.7 1.0
C38 C:Z53301 1.3 31.4 1.0
F42 C:Z53301 2.2 31.8 1.0
F41 C:Z53301 2.2 31.4 1.0
C37 C:Z53301 2.3 28.7 1.0
CD1 C:LEU24 3.2 19.9 1.0
CA B:PHE50 3.4 20.2 1.0
N B:PHE50 3.4 22.9 1.0
C36 C:Z53301 3.5 28.3 1.0
CG C:LEU24 3.5 19.8 1.0
CD2 B:LEU49 3.6 22.3 1.0
C B:LEU49 3.7 25.2 1.0
CG B:LEU49 3.8 23.8 1.0
O B:LEU49 3.9 24.0 1.0
CB B:PHE50 3.9 20.4 1.0
CB B:LEU49 4.1 23.3 1.0
CD2 C:LEU24 4.5 18.0 1.0
O B:SER46 4.5 16.8 1.0
CA B:LEU49 4.5 23.4 1.0
CB C:LEU24 4.7 16.4 1.0
C B:PHE50 4.7 23.9 1.0
CD1 B:PHE50 4.7 25.4 1.0
CD1 C:ILE29 4.7 18.7 1.0
C35 C:Z53301 4.7 28.5 1.0
CA C:LEU24 4.8 15.3 1.0
CG B:PHE50 4.8 23.0 1.0
CB B:ALA53 4.9 22.9 1.0
O1 C:Z53301 5.0 23.2 1.0

Fluorine binding site 8 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 8 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F301

b:31.4
occ:1.00
F41 C:Z53301 0.0 31.4 1.0
C38 C:Z53301 1.3 31.4 1.0
F42 C:Z53301 2.1 31.8 1.0
F40 C:Z53301 2.2 30.7 1.0
C37 C:Z53301 2.3 28.7 1.0
C36 C:Z53301 2.9 28.3 1.0
CA B:PHE50 3.6 20.2 1.0
CB B:ALA53 3.7 22.9 1.0
CD1 B:PHE50 3.8 25.4 1.0
NH2 C:ARG23 3.8 28.8 1.0
CZ C:ARG23 3.9 26.8 1.0
NH1 C:ARG23 4.0 23.2 1.0
CB B:PHE50 4.1 20.4 1.0
O B:PHE50 4.3 26.3 1.0
C35 C:Z53301 4.3 28.5 1.0
N B:PHE50 4.3 22.9 1.0
CG B:PHE50 4.4 23.0 1.0
O B:LEU49 4.4 24.0 1.0
C B:PHE50 4.5 23.9 1.0
CD1 C:LEU24 4.6 19.9 1.0
NE C:ARG23 4.6 24.8 1.0
C B:LEU49 4.7 25.2 1.0
CE1 B:PHE50 4.7 24.6 1.0
OD1 C:ASP27 4.8 30.0 1.0
CG C:ARG23 4.8 20.7 1.0

Fluorine binding site 9 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 9 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F301

b:31.8
occ:1.00
F42 C:Z53301 0.0 31.8 1.0
C38 C:Z53301 1.3 31.4 1.0
F41 C:Z53301 2.1 31.4 1.0
F40 C:Z53301 2.2 30.7 1.0
C37 C:Z53301 2.3 28.7 1.0
C36 C:Z53301 2.8 28.3 1.0
NH1 C:ARG23 3.6 23.2 1.0
CA C:LEU24 3.7 15.3 1.0
CD1 C:LEU24 3.7 19.9 1.0
CG C:LEU24 3.8 19.8 1.0
CB C:ASP27 3.8 25.1 1.0
OD1 C:ASP27 4.0 30.0 1.0
CG C:ASP27 4.0 27.9 1.0
O C:ARG23 4.1 20.0 1.0
CD1 C:ILE29 4.2 18.7 1.0
CZ C:ARG23 4.2 26.8 1.0
CB C:LEU24 4.3 16.4 1.0
C35 C:Z53301 4.3 28.5 1.0
N C:LEU24 4.3 16.3 1.0
O C:LEU24 4.4 17.7 1.0
C C:ARG23 4.5 16.7 1.0
C C:LEU24 4.5 15.7 1.0
NH2 C:ARG23 4.6 28.8 1.0
N34 C:Z53301 4.7 27.0 1.0
CG C:ARG23 4.8 20.7 1.0
OD2 C:ASP27 4.8 30.8 1.0
CD2 B:LEU49 4.9 22.3 1.0

Fluorine binding site 10 out of 42 in 9irp

Go back to Fluorine Binding Sites List in 9irp
Fluorine binding site 10 out of 42 in the Structure of Clpp From Staphylococcus Aureus in Complex with ZG297


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F301

b:25.9
occ:1.00
F40 D:Z53301 0.0 25.9 1.0
C38 D:Z53301 1.3 25.7 1.0
F42 D:Z53301 2.1 26.5 1.0
F41 D:Z53301 2.1 26.6 1.0
C37 D:Z53301 2.3 24.0 1.0
CD1 D:LEU24 3.2 19.6 1.0
CA C:PHE50 3.4 19.3 1.0
N C:PHE50 3.5 21.3 1.0
C36 D:Z53301 3.6 24.0 1.0
CG D:LEU24 3.7 19.1 1.0
C C:LEU49 3.8 19.6 1.0
CB C:PHE50 3.8 21.4 1.0
CD2 C:LEU49 3.8 17.1 1.0
O C:LEU49 3.9 19.3 1.0
CG C:LEU49 3.9 17.4 1.0
CB C:LEU49 4.2 14.8 1.0
CD1 C:PHE50 4.5 24.2 1.0
O C:SER46 4.5 14.7 1.0
CD2 D:LEU24 4.6 18.8 1.0
CA C:LEU49 4.6 16.1 1.0
CG C:PHE50 4.7 23.8 1.0
C C:PHE50 4.7 16.8 1.0
CD1 D:ILE29 4.7 13.8 1.0
CB D:LEU24 4.8 18.2 1.0
CA D:LEU24 4.8 17.0 1.0
C35 D:Z53301 4.8 23.4 1.0
CB C:ALA53 4.9 20.6 1.0

Reference:

B.Y.Wei, P.Y.Wang, T.Zhang, C.-G.Yang. Structure of Clpp From Staphylococcus Aureus in Complex with ZG297 To Be Published.
Page generated: Thu Oct 31 20:07:51 2024

Last articles

W in 8QLN
W in 8RJA
V in 8WTN
Te in 8QLN
Re in 9GHX
Rb in 8Z5C
Ni in 9C0T
Ni in 9C0S
Ni in 9GP1
Ni in 9FYO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy