Fluorine in PDB 8ya0: Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C)

All present enzymatic activity of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C):
7.4.2.8;

The structure of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C) (pdb code 8ya0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C), PDB code: 8ya0:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:45.8 occ:1.00 F1 A:BEF1002 0.0 45.8 1.0 BE A:BEF1002 1.7 45.8 1.0 O3B A:ADP1003 1.8 59.3 1.0 NH2 A:ARG528 2.3 42.0 1.0 NH1 A:ARG525 2.5 34.3 1.0 F2 A:BEF1002 3.0 45.8 1.0 F3 A:BEF1002 3.0 45.8 1.0 PB A:ADP1003 3.2 59.3 1.0 CZ A:ARG528 3.5 42.0 1.0 N A:GLY103 3.5 46.5 1.0 O3A A:ADP1003 3.7 59.3 1.0 CZ A:ARG525 3.8 34.3 1.0 CB A:THR102 3.9 41.5 1.0 O1B A:ADP1003 3.9 59.3 1.0 CA A:THR102 3.9 41.5 1.0 CG2 A:THR102 4.0 41.5 1.0 C A:THR102 4.1 41.5 1.0 NH1 A:ARG528 4.1 42.0 1.0 O2B A:ADP1003 4.3 59.3 1.0 CA A:GLY103 4.3 46.5 1.0 NE A:ARG528 4.4 42.0 1.0 NE A:ARG525 4.5 34.3 1.0 NH2 A:ARG525 4.6 34.3 1.0 O A:ARG489 4.7 36.5 1.0 O A:GLY490 4.8 37.3 1.0 CA A:GLY490 4.8 37.3 1.0 MG A:MG1001 4.9 42.0 1.0 OE1 A:GLN521 4.9 38.7 1.0 C A:GLY490 4.9 37.3 1.0 NZ A:LYS106 4.9 35.6 1.0 O A:GLY524 4.9 39.3 1.0

Fluorine binding site 2 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:45.8 occ:1.00 F2 A:BEF1002 0.0 45.8 1.0 BE A:BEF1002 1.8 45.8 1.0 NZ A:LYS106 2.4 35.6 1.0 O3B A:ADP1003 2.8 59.3 1.0 F1 A:BEF1002 3.0 45.8 1.0 F3 A:BEF1002 3.0 45.8 1.0 CE A:LYS106 3.3 35.6 1.0 CG2 A:THR102 3.6 41.5 1.0 OE1 A:GLU208 3.7 37.7 1.0 PB A:ADP1003 3.9 59.3 1.0 OE1 A:GLN521 4.0 38.7 1.0 OE2 A:GLU208 4.1 37.7 1.0 CA A:THR102 4.1 41.5 1.0 CD A:GLU208 4.3 37.7 1.0 O1B A:ADP1003 4.3 59.3 1.0 CB A:THR102 4.3 41.5 1.0 NH1 A:ARG525 4.4 34.3 1.0 CD A:LYS106 4.4 35.6 1.0 N A:GLY372 4.4 38.4 1.0 O2B A:ADP1003 4.5 59.3 1.0 MG A:MG1001 4.5 42.0 1.0 NE2 A:GLN521 4.5 38.7 1.0 O A:ARG489 4.5 36.5 1.0 CD A:GLN521 4.7 38.7 1.0 CA A:GLY372 4.8 38.4 1.0 N A:GLY103 4.9 46.5 1.0 N A:THR102 5.0 41.5 1.0

Fluorine binding site 3 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+7C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:45.8 occ:1.00 F3 A:BEF1002 0.0 45.8 1.0 BE A:BEF1002 1.8 45.8 1.0 MG A:MG1001 1.9 42.0 1.0 O1B A:ADP1003 2.2 59.3 1.0 O3B A:ADP1003 2.4 59.3 1.0 PB A:ADP1003 2.8 59.3 1.0 F1 A:BEF1002 3.0 45.8 1.0 F2 A:BEF1002 3.0 45.8 1.0 OE2 A:GLU208 3.6 37.7 1.0 O3A A:ADP1003 3.8 59.3 1.0 O A:GLY490 4.0 37.3 1.0 CA A:GLY490 4.0 37.3 1.0 O2B A:ADP1003 4.0 59.3 1.0 O2A A:ADP1003 4.2 59.3 1.0 C A:GLY490 4.4 37.3 1.0 CD A:GLU208 4.5 37.7 1.0 O A:ARG489 4.6 36.5 1.0 PA A:ADP1003 4.6 59.3 1.0 NH2 A:ARG528 4.6 42.0 1.0 NZ A:LYS106 4.6 35.6 1.0 NH1 A:ARG525 4.7 34.3 1.0 CE A:LYS106 4.7 35.6 1.0 OE1 A:GLU208 4.7 37.7 1.0 OD1 A:ASP207 4.9 45.4 1.0

X.Ou, C.Ma, D.Sun, J.Xu, Y.Wang, X.Wu, D.Wang, S.Yang, N.Gao, C.Song, L.Li. Secy Translocon Chaperones Protein Folding During Membrane Protein Insertion Cell 2025.