Fluorine in PDB 9e77: Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3

The structure of Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3 (pdb code 9e77). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3, PDB code: 9e77:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3 within 5.0Å range: probe atom residue distance (Å) B Occ E:F401 b:16.4 occ:1.00 F36 E:6LT401 0.0 16.4 1.0 C33 E:6LT401 1.4 16.4 1.0 F37 E:6LT401 2.2 16.4 1.0 C29 E:6LT401 2.3 16.4 1.0 C28 E:6LT401 3.0 16.4 1.0 CD2 E:LEU157 3.3 16.1 1.0 C I:ALA72 3.4 37.3 1.0 CA I:ALA72 3.5 37.3 1.0 N30 E:6LT401 3.5 16.4 1.0 N I:LEU73 3.7 43.8 1.0 O I:ALA72 3.8 37.3 1.0 N I:ALA72 3.9 37.3 1.0 CD2 I:LEU73 4.0 43.8 1.0 CB I:LEU73 4.0 43.8 1.0 C26 E:6LT401 4.2 16.4 1.0 O I:LEU71 4.2 33.7 1.0 C I:LEU71 4.2 33.7 1.0 CA I:LEU73 4.4 43.8 1.0 N31 E:6LT401 4.4 16.4 1.0 CG I:LEU73 4.4 43.8 1.0 CG E:LEU157 4.6 16.1 1.0 CD1 I:LEU73 4.6 43.8 1.0 CB I:ALA72 4.8 37.3 1.0 CB I:LEU71 4.9 33.7 1.0 OH E:TYR114 4.9 48.6 1.0 OG1 E:THR154 4.9 16.4 1.0 CG2 E:THR154 5.0 16.4 1.0

Fluorine binding site 2 out of 2 in the Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Csn-N8 in Complex with CSN5I-3 within 5.0Å range: probe atom residue distance (Å) B Occ E:F401 b:16.4 occ:1.00 F37 E:6LT401 0.0 16.4 1.0 C33 E:6LT401 1.4 16.4 1.0 F36 E:6LT401 2.2 16.4 1.0 C29 E:6LT401 2.3 16.4 1.0 N30 E:6LT401 2.7 16.4 1.0 OD1 E:ASN158 3.2 16.2 1.0 C28 E:6LT401 3.7 16.4 1.0 CG E:ASN158 3.8 16.2 1.0 ND2 E:ASN158 3.8 16.2 1.0 CB I:LEU71 3.9 33.7 1.0 O I:LEU71 3.9 33.7 1.0 N31 E:6LT401 4.0 16.4 1.0 C I:LEU71 4.0 33.7 1.0 CD2 E:LEU157 4.2 16.1 1.0 N I:ALA72 4.3 37.3 1.0 C26 E:6LT401 4.5 16.4 1.0 CA I:LEU71 4.5 33.7 1.0 CA I:ALA72 4.5 37.3 1.0 CG E:LEU157 4.8 16.1 1.0 CG I:LEU71 4.9 33.7 1.0 NE2 E:GLN162 4.9 25.0 1.0 C I:ALA72 4.9 37.3 1.0 CG2 E:THR154 5.0 16.4 1.0 N I:LEU71 5.0 33.7 1.0 C34 E:6LT401 5.0 16.4 1.0

H.Shi, N.Zheng. Focused Map of COP9 Signalosome Deneddylation State with Cullin-4A To Be Published.