Atomistry » Fluorine » PDB 9cdm-9f2h » 9ear
Atomistry »
  Fluorine »
    PDB 9cdm-9f2h »
      9ear »

Fluorine in PDB 9ear: CHD1-Nucleosome Complex (Closed State)

Enzymatic activity of CHD1-Nucleosome Complex (Closed State)

All present enzymatic activity of CHD1-Nucleosome Complex (Closed State):
3.6.4.12;

Fluorine Binding Sites:

The binding sites of Fluorine atom in the CHD1-Nucleosome Complex (Closed State) (pdb code 9ear). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the CHD1-Nucleosome Complex (Closed State), PDB code: 9ear:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 9ear

Go back to Fluorine Binding Sites List in 9ear
Fluorine binding site 1 out of 3 in the CHD1-Nucleosome Complex (Closed State)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of CHD1-Nucleosome Complex (Closed State) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:F1502

b:26.2
occ:1.00
F1 W:BEF1502 0.0 26.2 1.0
BE W:BEF1502 1.6 30.6 1.0
CZ W:ARG900 2.2 85.6 1.0
O W:GLY870 2.2 89.7 1.0
NH2 W:ARG900 2.3 81.1 1.0
NH1 W:ARG900 2.3 85.2 1.0
NH1 W:ARG897 2.5 86.0 1.0
F3 W:BEF1502 2.5 28.4 1.0
O2B W:ADP1501 2.6 28.6 1.0
F2 W:BEF1502 2.6 38.3 1.0
NE W:ARG900 3.0 83.4 1.0
C W:GLY870 3.1 89.9 1.0
PB W:ADP1501 3.2 32.0 1.0
O1B W:ADP1501 3.2 48.6 1.0
O3A W:ADP1501 3.4 21.0 1.0
CA W:GLY870 3.5 91.2 1.0
CZ W:ARG897 3.6 86.5 1.0
O W:ILE871 3.8 92.8 1.0
CD W:ARG900 3.9 81.7 1.0
NH2 W:ARG897 4.0 86.6 1.0
C W:ILE871 4.1 90.5 1.0
N W:ILE871 4.2 85.2 1.0
N W:GLY870 4.3 91.4 1.0
NZ W:LYS512 4.3 82.5 1.0
N W:ASN872 4.5 86.0 1.0
NE W:ARG897 4.7 87.2 1.0
CA W:ILE871 4.7 85.7 1.0
CA W:ASN872 4.7 82.6 1.0
O3B W:ADP1501 4.7 27.7 1.0
CB W:ASN872 4.9 85.1 1.0
PA W:ADP1501 5.0 24.4 1.0

Fluorine binding site 2 out of 3 in 9ear

Go back to Fluorine Binding Sites List in 9ear
Fluorine binding site 2 out of 3 in the CHD1-Nucleosome Complex (Closed State)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of CHD1-Nucleosome Complex (Closed State) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:F1502

b:38.3
occ:1.00
F2 W:BEF1502 0.0 38.3 1.0
BE W:BEF1502 1.6 30.6 1.0
NH1 W:ARG900 2.3 85.2 1.0
F3 W:BEF1502 2.6 28.4 1.0
F1 W:BEF1502 2.6 26.2 1.0
NZ W:LYS512 2.9 82.5 1.0
O2B W:ADP1501 2.9 28.6 1.0
NH2 W:ARG897 2.9 86.6 1.0
NH2 W:ARG900 2.9 81.1 1.0
CZ W:ARG900 3.0 85.6 1.0
NH1 W:ARG897 3.0 86.0 1.0
CZ W:ARG897 3.4 86.5 1.0
CB W:MET508 3.7 91.0 1.0
N W:GLY509 3.7 86.1 1.0
CE W:LYS512 3.7 86.8 1.0
CG W:MET508 3.8 92.5 1.0
CA W:MET508 3.8 89.2 1.0
C W:MET508 4.2 90.3 1.0
PB W:ADP1501 4.3 32.0 1.0
NE W:ARG900 4.3 83.4 1.0
OE1 W:GLN893 4.4 86.9 1.0
O W:GLY870 4.6 89.7 1.0
CA W:GLY509 4.6 86.3 1.0
CA W:GLY870 4.7 91.2 1.0
O1B W:ADP1501 4.7 48.6 1.0
NE W:ARG897 4.7 87.2 1.0
CD W:LYS512 4.9 86.5 1.0
N W:GLY870 5.0 91.4 1.0

Fluorine binding site 3 out of 3 in 9ear

Go back to Fluorine Binding Sites List in 9ear
Fluorine binding site 3 out of 3 in the CHD1-Nucleosome Complex (Closed State)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of CHD1-Nucleosome Complex (Closed State) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:F1502

b:28.4
occ:1.00
F3 W:BEF1502 0.0 28.4 1.0
BE W:BEF1502 1.5 30.6 1.0
F1 W:BEF1502 2.5 26.2 1.0
F2 W:BEF1502 2.6 38.3 1.0
CA W:GLY870 2.8 91.2 1.0
O2B W:ADP1501 3.0 28.6 1.0
O1B W:ADP1501 3.1 48.6 1.0
NH1 W:ARG897 3.2 86.0 1.0
O W:GLY870 3.3 89.7 1.0
NZ W:LYS512 3.5 82.5 1.0
C W:GLY870 3.5 89.9 1.0
N W:GLY870 3.5 91.4 1.0
PB W:ADP1501 3.6 32.0 1.0
CE W:LYS512 3.7 86.8 1.0
NH2 W:ARG900 3.9 81.1 1.0
NH1 W:ARG900 4.1 85.2 1.0
CZ W:ARG897 4.2 86.5 1.0
NH2 W:ARG897 4.3 86.6 1.0
CZ W:ARG900 4.3 85.6 1.0
O3A W:ADP1501 4.7 21.0 1.0
O3B W:ADP1501 4.7 27.7 1.0
OE1 W:GLN893 4.7 86.9 1.0
N W:ILE871 4.8 85.2 1.0
C W:LEU869 4.8 90.7 1.0

Reference:

A.M.James, L.Farnung. Structural Basis of Human CHD1 Nucleosome Recruitment and Pausing Mol.Cell 2025.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2025.04.020
Page generated: Wed Jul 16 10:57:18 2025

Last articles

Fe in 6XN6
Fe in 6XMC
Fe in 6XMA
Fe in 6XKV
Fe in 6XKU
Fe in 6XKT
Fe in 6XI0
Fe in 6XK8
Fe in 6XIG
Fe in 6XK7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy