Fluorine in PDB 9es6: Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex

All present enzymatic activity of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex:
3.6.4.9;

The structure of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex also contains other interesting chemical elements:

Potassium	(K)	14 atoms
Magnesium	(Mg)	14 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Fluorine atom in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex (pdb code 9es6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 42 binding sites of Fluorine where determined in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex, PDB code: 9es6:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F602 b:35.6 occ:1.00 F1 A:BEF602 0.0 35.6 1.0 O1B A:ADP601 1.4 41.2 1.0 BE A:BEF602 1.5 30.8 1.0 MG A:MG603 2.4 33.4 1.0 F3 A:BEF602 2.5 26.0 1.0 F2 A:BEF602 2.6 30.0 1.0 PB A:ADP601 2.7 38.3 1.0 OD2 A:ASP87 2.9 46.2 1.0 O2A A:ADP601 3.0 45.5 1.0 O3B A:ADP601 3.2 38.7 1.0 OD2 A:ASP399 3.4 51.1 1.0 O3A A:ADP601 3.5 22.6 1.0 CG A:ASP87 3.6 41.1 1.0 PA A:ADP601 3.7 29.4 1.0 O A:HOH708 3.8 41.6 1.0 O2B A:ADP601 3.8 38.5 1.0 OD1 A:ASP87 3.9 41.2 1.0 N A:GLY88 4.0 24.8 1.0 CG A:ASP399 4.2 49.5 1.0 K A:K604 4.3 31.1 1.0 O1A A:ADP601 4.3 37.6 1.0 O A:HOH703 4.6 37.7 1.0 OD2 A:ASP52 4.6 43.7 1.0 OD1 A:ASP399 4.7 48.3 1.0 N A:THR89 4.7 38.0 1.0 CA A:ASP87 4.7 33.6 1.0 CA A:GLY88 4.7 20.6 1.0 OG1 A:THR89 4.7 33.6 1.0 CB A:ASP87 4.8 29.8 1.0 OG1 A:THR90 4.8 28.5 1.0 C A:ASP87 4.9 36.0 1.0 O A:HOH702 4.9 21.3 1.0 CB A:ASP399 5.0 43.4 1.0

Fluorine binding site 2 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F602 b:30.0 occ:1.00 F2 A:BEF602 0.0 30.0 1.0 BE A:BEF602 1.6 30.8 1.0 O1B A:ADP601 2.4 41.2 1.0 F3 A:BEF602 2.5 26.0 1.0 F1 A:BEF602 2.6 35.6 1.0 K A:K604 2.7 31.1 1.0 N A:GLY53 2.9 25.9 1.0 OG1 A:THR90 3.0 28.5 1.0 OG1 A:THR89 3.5 33.6 1.0 PB A:ADP601 3.6 38.3 1.0 CA A:ASP52 3.6 29.3 1.0 O A:LYS51 3.7 37.5 1.0 C A:ASP52 3.7 32.7 1.0 CA A:GLY53 3.8 16.5 1.0 O3A A:ADP601 4.0 22.6 1.0 OD2 A:ASP52 4.0 43.7 1.0 O2B A:ADP601 4.1 38.5 1.0 O A:HOH708 4.2 41.6 1.0 CG A:ASP52 4.2 43.2 1.0 CB A:THR90 4.2 22.9 1.0 N A:THR90 4.3 22.7 1.0 O1A A:ADP601 4.3 37.6 1.0 OD2 A:ASP399 4.4 51.1 1.0 PA A:ADP601 4.4 29.4 1.0 O A:HOH703 4.5 37.7 1.0 CB A:ASP52 4.5 32.4 1.0 O2A A:ADP601 4.5 45.5 1.0 C A:LYS51 4.6 25.6 1.0 N A:ASP52 4.6 32.1 1.0 OD1 A:ASP52 4.6 46.0 1.0 MG A:MG603 4.8 33.4 1.0 N A:THR89 4.8 38.0 1.0 CB A:THR89 4.8 24.1 1.0 O3B A:ADP601 4.9 38.7 1.0 CA A:THR90 4.9 17.3 1.0 O A:ASP52 4.9 43.9 1.0

Fluorine binding site 3 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:F602 b:26.0 occ:1.00 F3 A:BEF602 0.0 26.0 1.0 BE A:BEF602 1.5 30.8 1.0 F2 A:BEF602 2.5 30.0 1.0 F1 A:BEF602 2.5 35.6 1.0 OG1 A:THR89 2.7 33.6 1.0 O1B A:ADP601 2.8 41.2 1.0 O A:HOH702 3.1 21.3 1.0 N A:THR89 3.6 38.0 1.0 OD2 A:ASP52 3.6 43.7 1.0 OD2 A:ASP399 3.6 51.1 1.0 CB A:THR89 3.7 24.1 1.0 CG2 A:THR89 3.7 25.1 1.0 OD1 A:ASP52 3.8 46.0 1.0 OD2 A:ASP87 3.8 46.2 1.0 CG A:ASP52 3.9 43.2 1.0 N A:GLY88 3.9 24.8 1.0 PB A:ADP601 4.1 38.3 1.0 N A:GLY53 4.1 25.9 1.0 OD1 A:ASP399 4.1 48.3 1.0 CG A:ASP399 4.2 49.5 1.0 CA A:ASP87 4.2 33.6 1.0 CA A:THR89 4.2 25.1 1.0 C A:ASP87 4.4 36.0 1.0 O2B A:ADP601 4.4 38.5 1.0 CG A:ASP87 4.5 41.1 1.0 C A:GLY88 4.6 30.6 1.0 N A:THR90 4.6 22.7 1.0 MG A:MG603 4.7 33.4 1.0 CA A:GLY88 4.7 20.6 1.0 CA A:ASP52 4.8 29.3 1.0 OG1 A:THR90 4.8 28.5 1.0 O A:GLY86 4.9 41.8 1.0 CA A:GLY53 4.9 16.5 1.0 O A:HOH703 4.9 37.7 1.0 O3B A:ADP601 4.9 38.7 1.0 CB A:ASP52 4.9 32.4 1.0 C A:ASP52 4.9 32.7 1.0 N A:VAL54 5.0 38.4 1.0 C A:THR89 5.0 25.7 1.0

Fluorine binding site 4 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F602 b:33.7 occ:1.00 F1 B:BEF602 0.0 33.7 1.0 O1B B:ADP601 1.3 41.5 1.0 BE B:BEF602 1.5 31.0 1.0 MG B:MG603 2.5 23.5 1.0 F3 B:BEF602 2.5 34.9 1.0 F2 B:BEF602 2.6 31.1 1.0 PB B:ADP601 2.6 38.1 1.0 OD1 B:ASP87 2.8 43.4 1.0 O2A B:ADP601 3.0 42.7 1.0 O3B B:ADP601 3.1 36.4 1.0 OD2 B:ASP399 3.4 49.8 1.0 O3A B:ADP601 3.5 25.4 1.0 CG B:ASP87 3.6 41.0 1.0 PA B:ADP601 3.7 36.7 1.0 O2B B:ADP601 3.7 36.4 1.0 O B:HOH708 3.9 43.1 1.0 OD2 B:ASP87 3.9 45.4 1.0 N B:GLY88 3.9 25.1 1.0 CG B:ASP399 4.2 47.0 1.0 O1A B:ADP601 4.3 36.0 1.0 K B:K604 4.4 28.1 1.0 N B:THR89 4.6 34.0 1.0 OG1 B:THR89 4.6 34.4 1.0 CA B:ASP87 4.7 30.3 1.0 CA B:GLY88 4.7 22.8 1.0 CB B:ASP87 4.7 30.3 1.0 OD1 B:ASP399 4.7 42.0 1.0 OD2 B:ASP52 4.8 42.2 1.0 O B:HOH703 4.8 36.3 1.0 OG1 B:THR90 4.8 24.4 1.0 C B:ASP87 4.8 35.7 1.0 O B:HOH702 4.8 27.5 1.0

Fluorine binding site 5 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F602 b:31.1 occ:1.00 F2 B:BEF602 0.0 31.1 1.0 BE B:BEF602 1.6 31.0 1.0 O1B B:ADP601 2.3 41.5 1.0 F3 B:BEF602 2.5 34.9 1.0 F1 B:BEF602 2.6 33.7 1.0 K B:K604 2.6 28.1 1.0 OG1 B:THR90 2.9 24.4 1.0 N B:GLY53 3.0 28.6 1.0 OG1 B:THR89 3.4 34.4 1.0 PB B:ADP601 3.5 38.1 1.0 CA B:ASP52 3.7 26.0 1.0 O B:LYS51 3.7 35.1 1.0 C B:ASP52 3.8 33.4 1.0 O3A B:ADP601 3.8 25.4 1.0 CA B:GLY53 3.9 19.4 1.0 O2B B:ADP601 4.0 36.4 1.0 CB B:THR90 4.1 23.5 1.0 O B:HOH708 4.2 43.1 1.0 N B:THR90 4.2 19.4 1.0 OD2 B:ASP52 4.2 42.2 1.0 O1A B:ADP601 4.2 36.0 1.0 CG B:ASP52 4.3 42.6 1.0 PA B:ADP601 4.3 36.7 1.0 OD2 B:ASP399 4.4 49.8 1.0 O2A B:ADP601 4.5 42.7 1.0 O B:HOH703 4.6 36.3 1.0 C B:LYS51 4.6 24.6 1.0 CB B:ASP52 4.6 28.3 1.0 N B:ASP52 4.7 29.3 1.0 OD1 B:ASP52 4.7 51.8 1.0 N B:THR89 4.8 34.0 1.0 O3B B:ADP601 4.8 36.4 1.0 CB B:THR89 4.8 26.9 1.0 CA B:THR90 4.8 15.8 1.0 MG B:MG603 4.8 23.5 1.0 O B:ASP52 5.0 39.9 1.0

Fluorine binding site 6 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F602 b:34.9 occ:1.00 F3 B:BEF602 0.0 34.9 1.0 BE B:BEF602 1.5 31.0 1.0 F2 B:BEF602 2.5 31.1 1.0 F1 B:BEF602 2.5 33.7 1.0 OG1 B:THR89 2.7 34.4 1.0 O1B B:ADP601 2.9 41.5 1.0 O B:HOH702 3.0 27.5 1.0 OD2 B:ASP399 3.5 49.8 1.0 OD1 B:ASP52 3.6 51.8 1.0 OD2 B:ASP52 3.6 42.2 1.0 CG B:ASP52 3.7 42.6 1.0 OD1 B:ASP87 3.7 43.4 1.0 CB B:THR89 3.8 26.9 1.0 CG2 B:THR89 3.8 23.6 1.0 N B:THR89 3.8 34.0 1.0 N B:GLY53 4.0 28.6 1.0 OD1 B:ASP399 4.1 42.0 1.0 N B:GLY88 4.1 25.1 1.0 PB B:ADP601 4.2 38.1 1.0 CG B:ASP399 4.2 47.0 1.0 CA B:THR89 4.4 24.1 1.0 CA B:ASP87 4.4 30.3 1.0 O2B B:ADP601 4.5 36.4 1.0 C B:ASP87 4.6 35.7 1.0 CG B:ASP87 4.6 41.0 1.0 CA B:ASP52 4.6 26.0 1.0 N B:THR90 4.7 19.4 1.0 CB B:ASP52 4.8 28.3 1.0 C B:GLY88 4.8 32.1 1.0 OG1 B:THR90 4.8 24.4 1.0 O B:HOH703 4.8 36.3 1.0 MG B:MG603 4.8 23.5 1.0 C B:ASP52 4.8 33.4 1.0 CA B:GLY53 4.8 19.4 1.0 O B:GLY86 4.9 38.8 1.0 N B:VAL54 4.9 40.0 1.0 CA B:GLY88 4.9 22.8 1.0 O3B B:ADP601 5.0 36.4 1.0

Fluorine binding site 7 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F602 b:36.2 occ:1.00 F1 C:BEF602 0.0 36.2 1.0 O1B C:ADP601 1.4 39.1 1.0 BE C:BEF602 1.5 31.1 1.0 MG C:MG603 2.3 19.6 1.0 F3 C:BEF602 2.5 31.9 1.0 OD2 C:ASP87 2.5 46.4 1.0 F2 C:BEF602 2.6 26.8 1.0 PB C:ADP601 2.7 37.4 1.0 O2A C:ADP601 2.9 44.1 1.0 O3B C:ADP601 3.2 41.4 1.0 OD2 C:ASP399 3.3 48.6 1.0 O3A C:ADP601 3.6 26.2 1.0 CG C:ASP87 3.6 42.9 1.0 PA C:ADP601 3.7 31.7 1.0 O C:HOH708 3.8 42.9 1.0 O2B C:ADP601 3.9 38.9 1.0 N C:GLY88 4.0 23.1 1.0 OD1 C:ASP87 4.1 42.9 1.0 CG C:ASP399 4.1 47.6 1.0 O1A C:ADP601 4.3 34.7 1.0 K C:K604 4.3 30.3 1.0 O C:HOH703 4.7 31.9 1.0 CA C:GLY88 4.7 17.8 1.0 OD1 C:ASP399 4.7 45.1 1.0 CA C:ASP87 4.7 33.5 1.0 N C:THR89 4.7 37.1 1.0 CB C:ASP87 4.8 35.2 1.0 OD2 C:ASP52 4.8 42.6 1.0 OG1 C:THR89 4.9 32.9 1.0 C C:ASP87 4.9 36.2 1.0 OG1 C:THR90 4.9 31.6 1.0 O C:HOH702 4.9 22.1 1.0 CB C:ASP399 4.9 40.5 1.0

Fluorine binding site 8 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F602 b:26.8 occ:1.00 F2 C:BEF602 0.0 26.8 1.0 BE C:BEF602 1.6 31.1 1.0 O1B C:ADP601 2.3 39.1 1.0 F3 C:BEF602 2.5 31.9 1.0 F1 C:BEF602 2.6 36.2 1.0 K C:K604 2.6 30.3 1.0 OG1 C:THR90 2.9 31.6 1.0 N C:GLY53 3.0 23.6 1.0 OG1 C:THR89 3.5 32.9 1.0 PB C:ADP601 3.5 37.4 1.0 CA C:ASP52 3.7 28.2 1.0 O C:LYS51 3.8 37.0 1.0 C C:ASP52 3.8 30.4 1.0 O3A C:ADP601 3.9 26.2 1.0 CA C:GLY53 3.9 14.1 1.0 O2B C:ADP601 4.0 38.9 1.0 CB C:THR90 4.1 22.3 1.0 N C:THR90 4.2 24.0 1.0 O C:HOH708 4.2 42.9 1.0 O1A C:ADP601 4.2 34.7 1.0 CG C:ASP52 4.3 41.5 1.0 OD2 C:ASP52 4.3 42.6 1.0 PA C:ADP601 4.3 31.7 1.0 OD2 C:ASP399 4.4 48.6 1.0 O2A C:ADP601 4.4 44.1 1.0 OD1 C:ASP52 4.5 46.5 1.0 CB C:ASP52 4.6 28.7 1.0 O C:HOH703 4.7 31.9 1.0 N C:THR89 4.7 37.1 1.0 C C:LYS51 4.7 26.4 1.0 MG C:MG603 4.7 19.6 1.0 N C:ASP52 4.7 31.6 1.0 O3B C:ADP601 4.8 41.4 1.0 CA C:THR90 4.8 18.5 1.0 CB C:THR89 4.8 24.8 1.0 OD2 C:ASP87 4.9 46.4 1.0

Fluorine binding site 9 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:F602 b:31.9 occ:1.00 F3 C:BEF602 0.0 31.9 1.0 BE C:BEF602 1.5 31.1 1.0 F2 C:BEF602 2.5 26.8 1.0 F1 C:BEF602 2.5 36.2 1.0 O1B C:ADP601 2.9 39.1 1.0 OG1 C:THR89 2.9 32.9 1.0 O C:HOH702 3.1 22.1 1.0 OD1 C:ASP52 3.4 46.5 1.0 OD2 C:ASP87 3.5 46.4 1.0 OD2 C:ASP399 3.5 48.6 1.0 N C:THR89 3.7 37.1 1.0 CG C:ASP52 3.8 41.5 1.0 OD2 C:ASP52 3.8 42.6 1.0 CB C:THR89 3.8 24.8 1.0 CG2 C:THR89 3.8 24.6 1.0 N C:GLY88 3.9 23.1 1.0 OD1 C:ASP399 4.1 45.1 1.0 CG C:ASP399 4.1 47.6 1.0 N C:GLY53 4.1 23.6 1.0 PB C:ADP601 4.2 37.4 1.0 CA C:ASP87 4.2 33.5 1.0 CA C:THR89 4.4 23.4 1.0 C C:ASP87 4.4 36.2 1.0 O2B C:ADP601 4.5 38.9 1.0 CG C:ASP87 4.5 42.9 1.0 MG C:MG603 4.6 19.6 1.0 C C:GLY88 4.7 31.2 1.0 N C:THR90 4.7 24.0 1.0 CA C:GLY88 4.7 17.8 1.0 CA C:ASP52 4.7 28.2 1.0 OG1 C:THR90 4.8 31.6 1.0 CB C:ASP52 4.8 28.7 1.0 O C:GLY86 4.9 40.7 1.0 O C:HOH703 4.9 31.9 1.0 CA C:GLY53 4.9 14.1 1.0 C C:ASP52 4.9 30.4 1.0 O3B C:ADP601 5.0 41.4 1.0 N C:VAL54 5.0 37.2 1.0

Fluorine binding site 10 out of 42 in the Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Adp:BEF3-Bound Human Mitochondrial HSP60 Double-Ring Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:F602 b:37.6 occ:1.00 F1 D:BEF602 0.0 37.6 1.0 O1B D:ADP601 1.4 39.4 1.0 BE D:BEF602 1.5 32.5 1.0 MG D:MG603 2.3 27.7 1.0 F3 D:BEF602 2.5 34.8 1.0 OD1 D:ASP87 2.6 47.2 1.0 F2 D:BEF602 2.6 31.1 1.0 PB D:ADP601 2.7 39.0 1.0 O2A D:ADP601 2.9 41.3 1.0 O3B D:ADP601 3.2 38.6 1.0 OD2 D:ASP399 3.3 49.7 1.0 O3A D:ADP601 3.5 26.7 1.0 CG D:ASP87 3.6 38.9 1.0 PA D:ADP601 3.7 39.7 1.0 O D:HOH708 3.8 42.2 1.0 O2B D:ADP601 3.9 42.8 1.0 N D:GLY88 4.0 21.5 1.0 CG D:ASP399 4.1 49.5 1.0 OD2 D:ASP87 4.1 35.4 1.0 O1A D:ADP601 4.3 37.8 1.0 K D:K604 4.3 33.3 1.0 OD2 D:ASP52 4.5 46.5 1.0 OD1 D:ASP399 4.6 49.1 1.0 O D:HOH703 4.7 35.9 1.0 CA D:ASP87 4.7 31.5 1.0 N D:THR89 4.7 38.2 1.0 CA D:GLY88 4.7 18.0 1.0 OG1 D:THR89 4.8 35.2 1.0 CB D:ASP87 4.8 32.2 1.0 O D:HOH702 4.8 28.3 1.0 OG1 D:THR90 4.8 28.1 1.0 C D:ASP87 4.9 35.2 1.0 CB D:ASP399 5.0 40.8 1.0

I.Tascon, J.P.Lopez-Alonso, I.Ubarretxena-Belandia, J.Vilchez, Y.Shkolnisky, A.Azem, J.Hirsch. Structural Basis For Atp-Triggered Assembly of Human Mitochondrial HSP60-HSP10 Chaperonin To Be Published.