Fluorine in PDB 9io1: Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Residues

The binding sites of Fluorine atom in the Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Residues (pdb code 9io1). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Residues, PDB code: 9io1:

Fluorine binding site 1 out of 1 in the Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Residues


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Residues within 5.0Å range: probe atom residue distance (Å) B Occ A:F101 b:0.6 occ:1.00 F9 A:53D101 0.0 0.6 1.0 C9 A:53D101 1.4 0.5 1.0 H181 A:53D101 1.8 0.8 1.0 C8 A:53D101 2.4 0.5 1.0 C10 A:53D101 2.4 0.5 1.0 C18 A:53D101 2.6 0.6 1.0 H10 A:53D101 2.7 0.5 1.0 H192 A:53D101 2.7 0.7 1.0 O4 A:U4 2.8 0.3 1.0 C19 A:53D101 2.8 0.6 1.0 N14 A:53D101 2.9 0.6 1.0 H62 A:A5 3.1 0.6 1.0 C4 A:U4 3.1 0.3 1.0 N17 A:53D101 3.2 0.7 1.0 H151 A:53D101 3.4 0.5 1.0 N6 A:A5 3.4 0.5 1.0 H182 A:53D101 3.5 0.7 1.0 H61 A:A5 3.5 0.5 1.0 C15 A:53D101 3.6 0.6 1.0 C5 A:U4 3.6 0.3 1.0 H5 A:U4 3.6 0.4 1.0 C7 A:53D101 3.6 0.6 1.0 C3 A:53D101 3.7 0.5 1.0 H61 A:A17 3.8 0.4 1.0 N3 A:U4 3.9 0.3 1.0 H191 A:53D101 3.9 0.7 1.0 C16 A:53D101 4.0 0.6 1.0 H3 A:U4 4.1 0.3 1.0 C2 A:53D101 4.2 0.6 1.0 O4 A:U15 4.2 0.5 1.0 C6 A:A5 4.3 0.5 1.0 C20 A:53D101 4.5 1.2 1.0 N6 A:A17 4.5 0.4 1.0 H7 A:53D101 4.5 0.6 1.0 C6 A:U4 4.5 0.4 1.0 H211 A:53D101 4.6 2.3 1.0 H152 A:53D101 4.6 0.6 1.0 H3 A:U15 4.6 0.5 1.0 H201 A:53D101 4.6 1.8 1.0 H161 A:53D101 4.6 0.8 1.0 N1 A:A17 4.6 0.4 1.0 H212 A:53D101 4.8 2.4 1.0 H162 A:53D101 4.8 0.8 1.0 C2 A:U4 4.8 0.3 1.0 C5 A:A5 4.9 0.6 1.0 C4 A:53D101 4.9 0.5 1.0 C21 A:53D101 4.9 1.9 1.0 C4 A:U15 4.9 0.5 1.0 N7 A:A5 4.9 0.6 1.0 C6 A:A17 4.9 0.4 1.0 O4 A:53D101 5.0 0.5 1.0

R.Ichijo, G.Kawai. Specific Interaction Between A Fluoroquinolone Derivative, KG022, and Rnas with A Single Bulge. Biochemistry 2025.
ISSN: ISSN 0006-2960
PubMed: 40067027
DOI: 10.1021/ACS.BIOCHEM.4C00669