Fluorine in PDB 1d0y: Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride.

The structure of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride., PDB code: 1d0y was solved by A.M.Gulick, C.B.Bauer, J.B.Thoden, E.Pate, R.G.Yount, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.800, 180.300, 54.000, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. (pdb code 1d0y). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride., PDB code: 1d0y:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:F999 b:20.3 occ:1.00 F1 A:ONP999 0.0 20.3 1.0 BE A:ONP999 1.5 79.6 1.0 F2 A:ONP999 2.4 18.2 1.0 OB3 A:ONP999 2.5 24.6 1.0 F3 A:ONP999 2.5 21.9 1.0 O A:HOH1504 2.7 56.9 1.0 NZ A:LYS185 2.8 14.1 1.0 CA A:SER181 3.1 16.0 1.0 O A:HOH1432 3.4 57.3 1.0 CE A:LYS185 3.5 19.5 1.0 PB A:ONP999 3.6 20.7 1.0 CB A:SER181 3.6 16.4 1.0 OG A:SER181 3.8 22.2 1.0 N A:SER181 3.8 15.3 1.0 OB1 A:ONP999 3.9 12.4 1.0 O A:HOH1688 4.0 10.9 1.0 MG A:MG998 4.0 19.1 1.0 OB2 A:ONP999 4.0 15.8 1.0 N A:GLY182 4.1 30.2 1.0 C A:SER181 4.1 26.1 1.0 O A:GLU180 4.2 17.1 1.0 C A:GLU180 4.2 14.8 1.0 O A:SER237 4.6 20.3 1.0 OG A:SER236 4.7 29.0 1.0 N A:SER237 4.8 16.9 1.0 O A:HOH1012 4.8 24.1 1.0 ND2 A:ASN233 4.9 28.2 1.0 OG A:SER237 4.9 21.2 1.0 OA3 A:ONP999 4.9 17.5 1.0 CB A:SER237 5.0 15.6 1.0 CD A:LYS185 5.0 20.9 1.0 O A:GLY179 5.0 13.8 1.0

Fluorine binding site 2 out of 3 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:F999 b:18.2 occ:1.00 F2 A:ONP999 0.0 18.2 1.0 BE A:ONP999 1.5 79.6 1.0 MG A:MG998 2.0 19.1 1.0 F1 A:ONP999 2.4 20.3 1.0 F3 A:ONP999 2.5 21.9 1.0 OB3 A:ONP999 2.5 24.6 1.0 OG A:SER237 2.7 21.2 1.0 N A:SER237 2.9 16.9 1.0 O A:HOH1688 2.9 10.9 1.0 OB2 A:ONP999 2.9 15.8 1.0 O A:HOH1023 3.0 20.1 1.0 CB A:SER237 3.1 15.6 1.0 PB A:ONP999 3.2 20.7 1.0 CA A:SER237 3.5 12.6 1.0 O A:SER237 3.8 20.3 1.0 O A:HOH1432 3.9 57.3 1.0 C A:SER236 3.9 28.6 1.0 O A:HOH1504 4.0 56.9 1.0 ND2 A:ASN233 4.0 28.2 1.0 OG1 A:THR186 4.0 29.1 1.0 CA A:SER236 4.1 23.4 1.0 OG A:SER236 4.2 29.0 1.0 C A:SER237 4.2 19.6 1.0 OB1 A:ONP999 4.3 12.4 1.0 OA3 A:ONP999 4.4 17.5 1.0 NZ A:LYS185 4.4 14.1 1.0 CE A:LYS185 4.7 19.5 1.0 OA2 A:ONP999 4.7 17.6 1.0 CB A:SER236 4.8 23.4 1.0 O A:ASN235 4.8 28.5 1.0 OG A:SER181 4.9 22.2 1.0 CA A:SER181 5.0 16.0 1.0

Fluorine binding site 3 out of 3 in the Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Dictyostelium Myosin S1DC (Motor Domain Fragment) Complexed with O- Nitrophenyl Aminoethyldiphosphate Beryllium Fluoride. within 5.0Å range: probe atom residue distance (Å) B Occ A:F999 b:21.9 occ:1.00 F3 A:ONP999 0.0 21.9 1.0 BE A:ONP999 1.5 79.6 1.0 F2 A:ONP999 2.5 18.2 1.0 OB3 A:ONP999 2.5 24.6 1.0 OG A:SER181 2.5 22.2 1.0 F1 A:ONP999 2.5 20.3 1.0 OG A:SER236 2.7 29.0 1.0 ND2 A:ASN233 3.1 28.2 1.0 CB A:SER236 3.3 23.4 1.0 CA A:SER236 3.3 23.4 1.0 O A:HOH1504 3.3 56.9 1.0 CB A:SER181 3.3 16.4 1.0 N A:SER237 3.5 16.9 1.0 CA A:SER181 3.5 16.0 1.0 N A:GLY182 3.7 30.2 1.0 C A:SER236 3.9 28.6 1.0 CB A:ASN233 3.9 26.5 1.0 CG A:ASN233 3.9 30.7 1.0 C A:SER181 4.0 26.1 1.0 PB A:ONP999 4.1 20.7 1.0 MG A:MG998 4.4 19.1 1.0 O A:SER237 4.4 20.3 1.0 N A:SER236 4.4 22.6 1.0 O A:HOH1081 4.5 29.6 1.0 O A:HOH1023 4.5 20.1 1.0 OB2 A:ONP999 4.6 15.8 1.0 NH2 A:ARG238 4.7 24.1 1.0 CA A:SER237 4.7 12.6 1.0 OA3 A:ONP999 4.8 17.5 1.0 N A:SER181 4.8 15.3 1.0 CA A:GLY182 4.9 13.3 1.0 OG A:SER237 4.9 21.2 1.0 CB A:SER237 4.9 15.6 1.0 C A:SER237 4.9 19.6 1.0 O A:ASN235 5.0 28.5 1.0

A.M.Gulick, C.B.Bauer, J.B.Thoden, E.Pate, R.G.Yount, I.Rayment. X-Ray Structures of the Dictyostelium Discoideum Myosin Motor Domain with Six Non-Nucleotide Analogs. J.Biol.Chem. V. 275 398 2000.
ISSN: ISSN 0021-9258
PubMed: 10617631
DOI: 10.1074/JBC.275.1.398