Atomistry » Fluorine » PDB 1fko-1h1d » 1ga8
Atomistry »
  Fluorine »
    PDB 1fko-1h1d »
      1ga8 »

Fluorine in PDB 1ga8: Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.

Enzymatic activity of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.

All present enzymatic activity of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.:
2.4.1.44;

Protein crystallography data

The structure of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs., PDB code: 1ga8 was solved by K.Persson, H.D.Ly, M.Diekelmann, W.W.Wakarchuk, S.G.Withers, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.38 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.975, 76.158, 87.228, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.6

Other elements in 1ga8:

The structure of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs. also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs. (pdb code 1ga8). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs., PDB code: 1ga8:

Fluorine binding site 1 out of 1 in 1ga8

Go back to Fluorine Binding Sites List in 1ga8
Fluorine binding site 1 out of 1 in the Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Galacosyltransferase Lgtc in Complex with Donor and Acceptor Sugar Analogs. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:29.9
occ:1.00
 F2' A:UPF501 0.0 29.9 1.0
C2' A:UPF501 1.4 25.4 1.0
C1' A:UPF501 2.4 24.0 1.0
C3' A:UPF501 2.5 25.6 1.0
O1B A:UPF501 2.8 9.8 1.0
O3' A:UPF501 2.9 24.3 1.0
O3B A:UPF501 3.1 15.0 1.0
ND2 A:ASN153 3.1 9.5 1.0
CE1 A:HIS244 3.1 8.1 1.0
OD1 A:ASN153 3.3 10.6 1.0
OD1 A:ASP103 3.4 7.5 1.0
PB A:UPF501 3.5 11.3 1.0
CG A:ASN153 3.6 8.8 1.0
NE2 A:HIS244 3.6 6.8 1.0
O5' A:UPF501 3.7 24.9 1.0
OE1 A:GLN189 3.7 8.8 1.0
MN A:MN400 3.7 11.3 1.0
C4' A:UPF501 3.8 24.6 1.0
N A:GLY155 3.9 6.5 1.0
CB A:CYS246 4.1 16.4 1.0
C5' A:UPF501 4.2 20.8 1.0
CA A:GLY155 4.2 7.7 1.0
ND1 A:HIS244 4.2 5.4 1.0
O3A A:UPF501 4.3 10.5 1.0
O4' A:UPF501 4.4 24.4 1.0
CG A:ASP103 4.5 8.2 1.0
N A:ALA154 4.5 7.4 1.0
C A:ALA154 4.6 8.3 1.0
O2B A:UPF501 4.8 12.8 1.0
CD A:GLN189 4.8 8.7 1.0
C4 A:DEL500 4.9 16.5 1.0
CD2 A:HIS244 4.9 5.6 1.0
CB A:ASN153 5.0 8.9 1.0

Reference:

K.Persson, H.D.Ly, M.Dieckelmann, W.W.Wakarchuk, S.G.Withers, N.C.Strynadka. Crystal Structure of the Retaining Galactosyltransferase Lgtc From Neisseria Meningitidis in Complex with Donor and Acceptor Sugar Analogs. Nat.Struct.Biol. V. 8 166 2001.
ISSN: ISSN 1072-8368
PubMed: 11175908
DOI: 10.1038/84168
Page generated: Mon Jul 14 10:48:48 2025

Last articles

Fe in 6CL5
Fe in 6CKE
Fe in 6CIZ
Fe in 6CIR
Fe in 6CIQ
Fe in 6CDK
Fe in 6CII
Fe in 6CFW
Fe in 6CIF
Fe in 6CIE
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy