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Fluorine in PDB 1r3e: Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit

Enzymatic activity of Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit

All present enzymatic activity of Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit:
4.2.1.70;

Protein crystallography data

The structure of Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit, PDB code: 1r3e was solved by H.Pan, S.Agarwalla, D.T.Moustakas, J.Finer-Moore, R.M.Stroud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 98.862, 159.337, 44.545, 90.00, 97.77, 90.00
R / Rfree (%) 22.3 / 27.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit (pdb code 1r3e). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit, PDB code: 1r3e:

Fluorine binding site 1 out of 1 in 1r3e

Go back to Fluorine Binding Sites List in 1r3e
Fluorine binding site 1 out of 1 in the Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna-Protein Recognition Through A Combination of Rigid Docking and Induced Fit within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F410

b:30.1
occ:1.00
 F5 C:FHU410 0.0 30.1 1.0
C5 C:FHU410 1.4 33.6 1.0
C4 C:FHU410 2.4 34.3 1.0
C6 C:FHU410 2.4 37.8 1.0
C1' C:FHU410 2.4 34.5 1.0
O6 C:FHU410 2.7 41.1 1.0
O4 C:FHU410 2.7 35.5 1.0
O4' C:FHU410 2.9 33.2 1.0
OH A:TYR76 3.2 34.0 1.0
C2' C:FHU410 3.3 32.2 1.0
O A:THR46 3.5 31.3 1.0
CD1 A:LEU47 3.6 35.5 1.0
N3 C:FHU410 3.7 36.0 1.0
N1 C:FHU410 3.7 36.4 1.0
C5' C:FHU410 3.8 39.6 1.0
C4' C:FHU410 3.8 34.2 1.0
NH1 A:ARG202 3.8 36.4 1.0
CZ A:TYR76 3.9 30.2 1.0
CE2 A:TYR76 3.9 32.5 1.0
C3' C:FHU410 4.2 32.2 1.0
O5' C:FHU410 4.2 45.7 1.0
C2 C:FHU410 4.2 37.0 1.0
CA A:LEU47 4.3 30.1 1.0
O2' C:FHU410 4.3 34.5 1.0
C A:THR46 4.5 29.8 1.0
CZ A:ARG202 4.6 30.7 1.0
CG A:LEU47 4.9 42.3 1.0
N A:ASP48 4.9 26.5 1.0
CD2 A:LEU200 4.9 30.9 1.0
N A:LEU47 4.9 21.2 1.0

Reference:

H.Pan, S.Agarwalla, D.T.Moustakas, J.Finer-Moore, R.M.Stroud. Crystal Structure of Trna Pseudouridine Synthase Trub and Its Rna Complex: Rna Recognition Through A Combination of Rigid Docking and Induced Fit Proc.Natl.Acad.Sci.Usa V. 100 12648 2003.
ISSN: ISSN 0027-8424
PubMed: 14566049
DOI: 10.1073/PNAS.2135585100
Page generated: Mon Jul 14 11:42:33 2025

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