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Fluorine in PDB 1rak: Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine.

Enzymatic activity of Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine.

All present enzymatic activity of Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine.:
3.5.4.1;

Protein crystallography data

The structure of Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine., PDB code: 1rak was solved by S.D.Mahan, G.C.Ireton, B.L.Stoddard, M.E.Black, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.89 / 1.32
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 109.481, 109.481, 241.088, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 17.9

Other elements in 1rak:

The structure of Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine. also contains other interesting chemical elements:

Iron (Fe) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine. (pdb code 1rak). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine., PDB code: 1rak:

Fluorine binding site 1 out of 1 in 1rak

Go back to Fluorine Binding Sites List in 1rak
Fluorine binding site 1 out of 1 in the Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Bacterial Cytosine Deaminase D314S Mutant Bound to 5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:11.6
occ:1.00
 F5 A:FPY501 0.0 11.6 1.0
C5 A:FPY501 1.3 11.4 1.0
C6 A:FPY501 2.3 12.2 1.0
C4 A:FPY501 2.4 10.6 1.0
O4 A:FPY501 2.9 9.9 1.0
OG A:SER314 3.0 10.5 1.0
OD1 A:ASP313 3.3 10.6 1.0
OD2 A:ASP313 3.5 8.9 1.0
CE3 A:TRP319 3.5 11.4 1.0
CD2 A:TRP319 3.5 10.0 1.0
CG A:ASP313 3.5 9.3 1.0
CG A:TRP319 3.6 10.7 1.0
CD2 A:HIS63 3.6 8.6 1.0
N1 A:FPY501 3.6 11.1 1.0
N3 A:FPY501 3.7 10.1 1.0
CB A:TRP319 3.7 11.5 1.0
NE2 A:HIS63 3.7 8.3 1.0
FE A:FE500 3.7 8.6 1.0
C2 A:FPY501 4.2 10.4 1.0
CZ3 A:TRP319 4.3 11.7 1.0
CE2 A:TRP319 4.4 10.8 1.0
CG A:HIS63 4.4 7.4 1.0
CB A:SER314 4.4 8.5 1.0
CD1 A:TRP319 4.4 11.8 1.0
CE1 A:HIS63 4.4 8.7 1.0
OD1 A:ASP317 4.7 12.9 1.0
CB A:ASP313 4.7 7.6 1.0
O A:ASP313 4.8 6.4 1.0
ND1 A:HIS63 4.8 8.5 1.0
NE1 A:TRP319 4.8 10.4 1.0
C A:ASP313 4.8 5.7 1.0
CG1 A:VAL278 4.9 8.8 1.0

Reference:

S.D.Mahan, G.C.Ireton, C.Knoeber, B.L.Stoddard, M.E.Black. Random Mutagenesis and Selection of Escherichia Coli Cytosine Deaminase For Cancer Gene Therapy. Protein Eng.Des.Sel. V. 17 625 2004.
ISSN: ISSN 1741-0126
PubMed: 15381761
DOI: 10.1093/PROTEIN/GZH074
Page generated: Mon Jul 14 11:43:10 2025

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