Fluorine in PDB 1rlt: Transition State Analogue of Ybiv From E. Coli K12
Protein crystallography data
The structure of Transition State Analogue of Ybiv From E. Coli K12, PDB code: 1rlt
was solved by
A.Roberts,
S.Y.Lee,
E.Mccullagh,
R.E.Silversmith,
D.E.Wemmer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.93 /
2.20
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.761,
91.166,
183.850,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
22.1 /
26.4
|
Other elements in 1rlt:
The structure of Transition State Analogue of Ybiv From E. Coli K12 also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Transition State Analogue of Ybiv From E. Coli K12
(pdb code 1rlt). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Transition State Analogue of Ybiv From E. Coli K12, PDB code: 1rlt:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 1 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:43.7
occ:1.00
|
F1
|
A:AF3801
|
0.0
|
43.7
|
1.0
|
|
AL
|
A:AF3801
|
1.7
|
44.1
|
1.0
|
|
NZ
|
A:LYS192
|
2.7
|
12.7
|
1.0
|
|
N
|
A:GLY45
|
2.8
|
22.2
|
1.0
|
|
F2
|
A:AF3801
|
2.9
|
41.0
|
1.0
|
|
F3
|
A:AF3801
|
2.9
|
47.0
|
1.0
|
|
OD1
|
A:ASP9
|
3.0
|
22.4
|
1.0
|
|
CA
|
A:SER44
|
3.1
|
22.5
|
1.0
|
|
OG
|
A:SER44
|
3.2
|
20.0
|
1.0
|
|
CE
|
A:LYS192
|
3.4
|
20.7
|
1.0
|
|
CB
|
A:SER44
|
3.4
|
20.9
|
1.0
|
|
O
|
A:HOH911
|
3.5
|
45.5
|
1.0
|
|
C
|
A:SER44
|
3.5
|
22.1
|
1.0
|
|
CA
|
A:GLY45
|
4.0
|
18.5
|
1.0
|
|
O
|
A:ALA43
|
4.0
|
26.5
|
1.0
|
|
CG
|
A:ASP9
|
4.0
|
24.3
|
1.0
|
|
ND2
|
A:ASN218
|
4.1
|
22.1
|
1.0
|
|
OD1
|
A:ASN218
|
4.2
|
21.2
|
1.0
|
|
N
|
A:SER44
|
4.3
|
23.2
|
1.0
|
|
O
|
A:SER178
|
4.4
|
26.1
|
1.0
|
|
O
|
A:HOH807
|
4.5
|
22.5
|
1.0
|
|
CG
|
A:ASN218
|
4.5
|
19.5
|
1.0
|
|
OD2
|
A:ASP9
|
4.5
|
19.8
|
1.0
|
|
C
|
A:ALA43
|
4.6
|
26.2
|
1.0
|
|
N
|
A:ASN46
|
4.6
|
18.5
|
1.0
|
|
O
|
A:SER44
|
4.7
|
23.7
|
1.0
|
|
N
|
A:MET10
|
4.7
|
21.4
|
1.0
|
|
MG
|
A:MG805
|
4.8
|
26.0
|
1.0
|
|
C
|
A:GLY45
|
4.8
|
16.8
|
1.0
|
|
CD
|
A:LYS192
|
4.9
|
16.5
|
1.0
|
|
OD1
|
A:ASP219
|
5.0
|
25.1
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 2 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:41.0
occ:1.00
|
F2
|
A:AF3801
|
0.0
|
41.0
|
1.0
|
|
AL
|
A:AF3801
|
1.7
|
44.1
|
1.0
|
|
N
|
A:ASP11
|
2.7
|
20.9
|
1.0
|
|
F3
|
A:AF3801
|
2.9
|
47.0
|
1.0
|
|
N
|
A:MET10
|
2.9
|
21.4
|
1.0
|
|
F1
|
A:AF3801
|
2.9
|
43.7
|
1.0
|
|
CB
|
A:MET10
|
2.9
|
22.5
|
1.0
|
|
OG
|
A:SER44
|
3.0
|
20.0
|
1.0
|
|
CA
|
A:MET10
|
3.2
|
18.1
|
1.0
|
|
OD1
|
A:ASP11
|
3.2
|
21.6
|
1.0
|
|
C
|
A:MET10
|
3.4
|
21.6
|
1.0
|
|
ND2
|
A:ASN46
|
3.6
|
16.0
|
1.0
|
|
OD1
|
A:ASP9
|
3.6
|
22.4
|
1.0
|
|
CB
|
A:SER44
|
3.6
|
20.9
|
1.0
|
|
O
|
A:HOH911
|
3.7
|
45.5
|
1.0
|
|
CG
|
A:ASP11
|
3.8
|
24.2
|
1.0
|
|
CA
|
A:ASP11
|
3.9
|
22.6
|
1.0
|
|
CG
|
A:MET10
|
3.9
|
25.4
|
1.0
|
|
CB
|
A:ASP11
|
3.9
|
21.8
|
1.0
|
|
CG
|
A:ASP9
|
4.0
|
24.3
|
1.0
|
|
OD2
|
A:ASP9
|
4.0
|
19.8
|
1.0
|
|
C
|
A:ASP9
|
4.1
|
20.1
|
1.0
|
|
MG
|
A:MG805
|
4.3
|
26.0
|
1.0
|
|
CA
|
A:SER44
|
4.5
|
22.5
|
1.0
|
|
O
|
A:HOH825
|
4.6
|
25.8
|
1.0
|
|
O
|
A:ASP11
|
4.6
|
23.9
|
1.0
|
|
O
|
A:MET10
|
4.6
|
22.6
|
1.0
|
|
CG
|
A:ASN46
|
4.6
|
20.3
|
1.0
|
|
CA
|
A:ASP9
|
4.7
|
19.8
|
1.0
|
|
C
|
A:ASP11
|
4.7
|
23.5
|
1.0
|
|
N
|
A:GLY45
|
4.8
|
22.2
|
1.0
|
|
OD2
|
A:ASP11
|
4.9
|
25.3
|
1.0
|
|
CB
|
A:ASP9
|
4.9
|
23.9
|
1.0
|
|
NZ
|
A:LYS192
|
5.0
|
12.7
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 3 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F801
b:47.0
occ:1.00
|
F3
|
A:AF3801
|
0.0
|
47.0
|
1.0
|
|
AL
|
A:AF3801
|
1.7
|
44.1
|
1.0
|
|
MG
|
A:MG805
|
2.0
|
26.0
|
1.0
|
|
O
|
A:HOH807
|
2.8
|
22.5
|
1.0
|
|
OD2
|
A:ASP9
|
2.8
|
19.8
|
1.0
|
|
F2
|
A:AF3801
|
2.9
|
41.0
|
1.0
|
|
F1
|
A:AF3801
|
2.9
|
43.7
|
1.0
|
|
OD1
|
A:ASP9
|
3.0
|
22.4
|
1.0
|
|
O
|
A:HOH892
|
3.2
|
26.5
|
1.0
|
|
CG
|
A:ASP9
|
3.3
|
24.3
|
1.0
|
|
O
|
A:ASP11
|
3.3
|
23.9
|
1.0
|
|
O
|
A:HOH911
|
3.6
|
45.5
|
1.0
|
|
CA
|
A:GLY179
|
3.6
|
24.4
|
1.0
|
|
CB
|
A:ASP11
|
3.7
|
21.8
|
1.0
|
|
N
|
A:ASP11
|
3.7
|
20.9
|
1.0
|
|
CA
|
A:ASP11
|
4.0
|
22.6
|
1.0
|
|
C
|
A:ASP11
|
4.1
|
23.5
|
1.0
|
|
O
|
A:GLY179
|
4.1
|
26.9
|
1.0
|
|
OD1
|
A:ASP11
|
4.1
|
21.6
|
1.0
|
|
OD1
|
A:ASP215
|
4.2
|
19.0
|
1.0
|
|
C
|
A:GLY179
|
4.2
|
28.0
|
1.0
|
|
O
|
A:SER178
|
4.4
|
26.1
|
1.0
|
|
CG
|
A:ASP11
|
4.4
|
24.2
|
1.0
|
|
N
|
A:MET10
|
4.4
|
21.4
|
1.0
|
|
NZ
|
A:LYS192
|
4.4
|
12.7
|
1.0
|
|
ND2
|
A:ASN218
|
4.5
|
22.1
|
1.0
|
|
OG
|
A:SER216
|
4.5
|
32.5
|
1.0
|
|
C
|
A:MET10
|
4.6
|
21.6
|
1.0
|
|
OD1
|
A:ASN218
|
4.7
|
21.2
|
1.0
|
|
CB
|
A:ASP9
|
4.7
|
23.9
|
1.0
|
|
N
|
A:GLY179
|
4.8
|
27.4
|
1.0
|
|
OD2
|
A:ASP219
|
4.9
|
28.5
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 4 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F802
b:52.3
occ:1.00
|
F1
|
B:AF3802
|
0.0
|
52.3
|
1.0
|
|
AL
|
B:AF3802
|
1.7
|
51.8
|
1.0
|
|
NZ
|
B:LYS192
|
2.5
|
20.6
|
1.0
|
|
OD1
|
B:ASP9
|
2.7
|
27.5
|
1.0
|
|
F2
|
B:AF3802
|
2.9
|
52.1
|
1.0
|
|
F3
|
B:AF3802
|
2.9
|
52.4
|
1.0
|
|
CE
|
B:LYS192
|
3.2
|
25.4
|
1.0
|
|
N
|
B:GLY45
|
3.2
|
25.7
|
1.0
|
|
CA
|
B:SER44
|
3.4
|
25.0
|
1.0
|
|
O
|
B:HOH857
|
3.5
|
52.7
|
1.0
|
|
OG
|
B:SER44
|
3.6
|
26.1
|
1.0
|
|
ND2
|
B:ASN218
|
3.7
|
35.7
|
1.0
|
|
OD1
|
B:ASN218
|
3.8
|
35.1
|
1.0
|
|
C
|
B:SER44
|
3.8
|
24.6
|
1.0
|
|
CG
|
B:ASP9
|
3.8
|
28.5
|
1.0
|
|
CB
|
B:SER44
|
3.8
|
24.6
|
1.0
|
|
O
|
B:HOH816
|
4.0
|
29.9
|
1.0
|
|
O
|
B:ALA43
|
4.1
|
26.3
|
1.0
|
|
CG
|
B:ASN218
|
4.1
|
34.9
|
1.0
|
|
OD2
|
B:ASP9
|
4.2
|
26.6
|
1.0
|
|
CA
|
B:GLY45
|
4.3
|
22.9
|
1.0
|
|
MG
|
B:MG806
|
4.4
|
37.3
|
1.0
|
|
OD1
|
B:ASP219
|
4.5
|
22.8
|
1.0
|
|
N
|
B:SER44
|
4.5
|
26.1
|
1.0
|
|
O
|
B:SER178
|
4.6
|
53.9
|
1.0
|
|
CD
|
B:LYS192
|
4.6
|
25.9
|
1.0
|
|
N
|
B:MET10
|
4.7
|
20.3
|
1.0
|
|
CA
|
B:GLY179
|
4.7
|
61.4
|
1.0
|
|
C
|
B:ALA43
|
4.7
|
26.4
|
1.0
|
|
O
|
B:SER44
|
5.0
|
24.8
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 5 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F802
b:52.1
occ:1.00
|
F2
|
B:AF3802
|
0.0
|
52.1
|
1.0
|
|
AL
|
B:AF3802
|
1.7
|
51.8
|
1.0
|
|
N
|
B:ASP11
|
2.7
|
24.1
|
1.0
|
|
N
|
B:MET10
|
2.8
|
20.3
|
1.0
|
|
CB
|
B:MET10
|
2.8
|
24.3
|
1.0
|
|
OG
|
B:SER44
|
2.9
|
26.1
|
1.0
|
|
F3
|
B:AF3802
|
2.9
|
52.4
|
1.0
|
|
F1
|
B:AF3802
|
2.9
|
52.3
|
1.0
|
|
CA
|
B:MET10
|
3.1
|
22.7
|
1.0
|
|
C
|
B:MET10
|
3.3
|
23.5
|
1.0
|
|
CB
|
B:SER44
|
3.4
|
24.6
|
1.0
|
|
OD1
|
B:ASP11
|
3.6
|
33.0
|
1.0
|
|
OD1
|
B:ASP9
|
3.6
|
27.5
|
1.0
|
|
O
|
B:HOH857
|
3.8
|
52.7
|
1.0
|
|
CA
|
B:ASP11
|
3.9
|
26.2
|
1.0
|
|
CB
|
B:ASP11
|
4.0
|
25.6
|
1.0
|
|
ND2
|
B:ASN46
|
4.0
|
21.5
|
1.0
|
|
CG
|
B:ASP11
|
4.0
|
29.6
|
1.0
|
|
CG
|
B:ASP9
|
4.0
|
28.5
|
1.0
|
|
CG
|
B:MET10
|
4.0
|
26.9
|
1.0
|
|
C
|
B:ASP9
|
4.1
|
20.8
|
1.0
|
|
CA
|
B:SER44
|
4.1
|
25.0
|
1.0
|
|
OD2
|
B:ASP9
|
4.1
|
26.6
|
1.0
|
|
MG
|
B:MG806
|
4.3
|
37.3
|
1.0
|
|
O
|
B:MET10
|
4.6
|
23.2
|
1.0
|
|
O
|
B:ASP11
|
4.6
|
27.9
|
1.0
|
|
CA
|
B:ASP9
|
4.6
|
23.1
|
1.0
|
|
N
|
B:GLY45
|
4.6
|
25.7
|
1.0
|
|
O
|
B:HOH833
|
4.7
|
29.1
|
1.0
|
|
C
|
B:ASP11
|
4.7
|
25.9
|
1.0
|
|
NZ
|
B:LYS192
|
4.8
|
20.6
|
1.0
|
|
CG
|
B:ASN46
|
4.9
|
23.1
|
1.0
|
|
OD2
|
B:ASP11
|
4.9
|
31.6
|
1.0
|
|
O
|
B:ALA43
|
4.9
|
26.3
|
1.0
|
|
CB
|
B:ASP9
|
4.9
|
25.1
|
1.0
|
|
C
|
B:SER44
|
5.0
|
24.6
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 6 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F802
b:52.4
occ:1.00
|
F3
|
B:AF3802
|
0.0
|
52.4
|
1.0
|
|
AL
|
B:AF3802
|
1.7
|
51.8
|
1.0
|
|
MG
|
B:MG806
|
1.9
|
37.3
|
1.0
|
|
O
|
B:HOH816
|
2.8
|
29.9
|
1.0
|
|
F2
|
B:AF3802
|
2.9
|
52.1
|
1.0
|
|
F1
|
B:AF3802
|
2.9
|
52.3
|
1.0
|
|
OD2
|
B:ASP9
|
3.0
|
26.6
|
1.0
|
|
O
|
B:ASP11
|
3.1
|
27.9
|
1.0
|
|
O
|
B:HOH889
|
3.1
|
34.5
|
1.0
|
|
OD1
|
B:ASP9
|
3.3
|
27.5
|
1.0
|
|
CB
|
B:ASP11
|
3.4
|
25.6
|
1.0
|
|
O
|
B:HOH857
|
3.4
|
52.7
|
1.0
|
|
N
|
B:ASP11
|
3.5
|
24.1
|
1.0
|
|
CG
|
B:ASP9
|
3.5
|
28.5
|
1.0
|
|
CA
|
B:GLY179
|
3.7
|
61.4
|
1.0
|
|
CA
|
B:ASP11
|
3.7
|
26.2
|
1.0
|
|
C
|
B:ASP11
|
3.8
|
25.9
|
1.0
|
|
O
|
B:GLY179
|
3.9
|
65.1
|
1.0
|
|
OD1
|
B:ASP11
|
4.0
|
33.0
|
1.0
|
|
OD1
|
B:ASP215
|
4.0
|
25.4
|
1.0
|
|
CG
|
B:ASP11
|
4.2
|
29.6
|
1.0
|
|
C
|
B:GLY179
|
4.3
|
65.6
|
1.0
|
|
N
|
B:MET10
|
4.4
|
20.3
|
1.0
|
|
C
|
B:MET10
|
4.4
|
23.5
|
1.0
|
|
OG
|
B:SER216
|
4.6
|
38.5
|
1.0
|
|
NZ
|
B:LYS192
|
4.7
|
20.6
|
1.0
|
|
OD1
|
B:ASN218
|
4.8
|
35.1
|
1.0
|
|
ND2
|
B:ASN218
|
4.8
|
35.7
|
1.0
|
|
OD2
|
B:ASP219
|
4.9
|
29.8
|
1.0
|
|
CA
|
B:MET10
|
4.9
|
22.7
|
1.0
|
|
CB
|
B:ASP9
|
4.9
|
25.1
|
1.0
|
|
N
|
B:GLY179
|
4.9
|
56.7
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 7 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F803
b:58.8
occ:1.00
|
F1
|
C:AF3803
|
0.0
|
58.8
|
1.0
|
|
AL
|
C:AF3803
|
1.7
|
58.7
|
1.0
|
|
OG
|
C:SER44
|
2.7
|
29.6
|
1.0
|
|
F3
|
C:AF3803
|
2.9
|
58.6
|
1.0
|
|
F2
|
C:AF3803
|
2.9
|
58.4
|
1.0
|
|
N
|
C:ASP11
|
3.1
|
33.4
|
1.0
|
|
N
|
C:MET10
|
3.2
|
33.4
|
1.0
|
|
CB
|
C:MET10
|
3.3
|
29.5
|
1.0
|
|
CB
|
C:SER44
|
3.4
|
25.8
|
1.0
|
|
OD1
|
C:ASP9
|
3.4
|
33.3
|
1.0
|
|
CA
|
C:MET10
|
3.6
|
34.4
|
1.0
|
|
OD1
|
C:ASP11
|
3.6
|
36.6
|
1.0
|
|
O
|
C:HOH811
|
3.7
|
50.0
|
1.0
|
|
ND2
|
C:ASN46
|
3.8
|
29.4
|
1.0
|
|
C
|
C:MET10
|
3.8
|
34.1
|
1.0
|
|
CB
|
C:ASP11
|
3.9
|
33.8
|
1.0
|
|
CG
|
C:ASP9
|
3.9
|
31.4
|
1.0
|
|
CG
|
C:ASP11
|
4.0
|
36.7
|
1.0
|
|
CA
|
C:ASP11
|
4.1
|
33.9
|
1.0
|
|
CA
|
C:SER44
|
4.1
|
26.4
|
1.0
|
|
OD2
|
C:ASP9
|
4.1
|
28.8
|
1.0
|
|
CG
|
C:MET10
|
4.1
|
28.3
|
1.0
|
|
N
|
C:GLY45
|
4.4
|
27.4
|
1.0
|
|
C
|
C:ASP9
|
4.4
|
33.6
|
1.0
|
|
MG
|
C:MG807
|
4.4
|
39.2
|
1.0
|
|
O
|
C:ASP11
|
4.7
|
37.4
|
1.0
|
|
CG
|
C:ASN46
|
4.8
|
29.3
|
1.0
|
|
NZ
|
C:LYS192
|
4.8
|
41.8
|
1.0
|
|
C
|
C:SER44
|
4.8
|
25.7
|
1.0
|
|
CA
|
C:ASP9
|
4.8
|
32.3
|
1.0
|
|
O
|
C:ALA43
|
4.8
|
30.4
|
1.0
|
|
O
|
C:HOH836
|
4.9
|
34.6
|
1.0
|
|
C
|
C:ASP11
|
4.9
|
34.7
|
1.0
|
|
OD2
|
C:ASP11
|
4.9
|
36.5
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 8 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F803
b:58.4
occ:1.00
|
F2
|
C:AF3803
|
0.0
|
58.4
|
1.0
|
|
AL
|
C:AF3803
|
1.7
|
58.7
|
1.0
|
|
NZ
|
C:LYS192
|
2.9
|
41.8
|
1.0
|
|
F3
|
C:AF3803
|
2.9
|
58.6
|
1.0
|
|
F1
|
C:AF3803
|
2.9
|
58.8
|
1.0
|
|
N
|
C:GLY45
|
2.9
|
27.4
|
1.0
|
|
ND2
|
C:ASN218
|
2.9
|
46.0
|
1.0
|
|
OD1
|
C:ASP9
|
3.2
|
33.3
|
1.0
|
|
CE
|
C:LYS192
|
3.4
|
41.3
|
1.0
|
|
CA
|
C:SER44
|
3.6
|
26.4
|
1.0
|
|
O
|
C:HOH811
|
3.6
|
50.0
|
1.0
|
|
OG
|
C:SER44
|
3.6
|
29.6
|
1.0
|
|
C
|
C:SER44
|
3.7
|
25.7
|
1.0
|
|
CG
|
C:ASN218
|
3.8
|
46.9
|
1.0
|
|
CA
|
C:GLY45
|
3.9
|
27.4
|
1.0
|
|
CB
|
C:SER44
|
4.0
|
25.8
|
1.0
|
|
OD1
|
C:ASN218
|
4.0
|
48.5
|
1.0
|
|
CG
|
C:ASP9
|
4.3
|
31.4
|
1.0
|
|
O3
|
C:GOL759
|
4.3
|
48.6
|
1.0
|
|
OG
|
C:SER178
|
4.4
|
79.5
|
1.0
|
|
O
|
C:ALA43
|
4.5
|
30.4
|
1.0
|
|
OD2
|
C:ASP9
|
4.6
|
28.8
|
1.0
|
|
MG
|
C:MG807
|
4.7
|
39.2
|
1.0
|
|
N
|
C:SER44
|
4.8
|
26.8
|
1.0
|
|
OD1
|
C:ASN68
|
4.8
|
41.1
|
1.0
|
|
OD1
|
C:ASP219
|
4.8
|
35.1
|
1.0
|
|
N
|
C:ASN46
|
4.9
|
27.8
|
1.0
|
|
O
|
C:SER44
|
4.9
|
23.7
|
1.0
|
|
C
|
C:GLY45
|
4.9
|
28.4
|
1.0
|
|
CD
|
C:LYS192
|
4.9
|
41.4
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 9 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F803
b:58.6
occ:1.00
|
F3
|
C:AF3803
|
0.0
|
58.6
|
1.0
|
|
AL
|
C:AF3803
|
1.7
|
58.7
|
1.0
|
|
MG
|
C:MG807
|
1.9
|
39.2
|
1.0
|
|
OD2
|
C:ASP9
|
2.6
|
28.8
|
1.0
|
|
F1
|
C:AF3803
|
2.9
|
58.8
|
1.0
|
|
F2
|
C:AF3803
|
2.9
|
58.4
|
1.0
|
|
OD1
|
C:ASP9
|
2.9
|
33.3
|
1.0
|
|
CG
|
C:ASP9
|
3.1
|
31.4
|
1.0
|
|
O
|
C:ASP11
|
3.2
|
37.4
|
1.0
|
|
O
|
C:HOH839
|
3.2
|
46.7
|
1.0
|
|
OD1
|
C:ASP215
|
3.5
|
36.8
|
1.0
|
|
O
|
C:HOH811
|
3.5
|
50.0
|
1.0
|
|
CB
|
C:ASP11
|
3.6
|
33.8
|
1.0
|
|
N
|
C:ASP11
|
3.8
|
33.4
|
1.0
|
|
C
|
C:ASP11
|
4.0
|
34.7
|
1.0
|
|
CA
|
C:ASP11
|
4.0
|
33.9
|
1.0
|
|
OD1
|
C:ASN218
|
4.4
|
48.5
|
1.0
|
|
OD1
|
C:ASP11
|
4.4
|
36.6
|
1.0
|
|
NZ
|
C:LYS192
|
4.4
|
41.8
|
1.0
|
|
CG
|
C:ASP11
|
4.5
|
36.7
|
1.0
|
|
ND2
|
C:ASN218
|
4.5
|
46.0
|
1.0
|
|
CG
|
C:ASP215
|
4.5
|
39.3
|
1.0
|
|
O
|
C:SER178
|
4.5
|
92.9
|
1.0
|
|
N
|
C:MET10
|
4.5
|
33.4
|
1.0
|
|
OD2
|
C:ASP219
|
4.6
|
38.5
|
1.0
|
|
CB
|
C:ASP9
|
4.6
|
32.3
|
1.0
|
|
C
|
C:MET10
|
4.7
|
34.1
|
1.0
|
|
OD2
|
C:ASP215
|
4.7
|
39.1
|
1.0
|
|
OG
|
C:SER178
|
4.8
|
79.5
|
1.0
|
|
OG
|
C:SER216
|
4.8
|
53.0
|
1.0
|
|
CG
|
C:ASN218
|
4.9
|
46.9
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 1rlt
Go back to
Fluorine Binding Sites List in 1rlt
Fluorine binding site 10 out
of 12 in the Transition State Analogue of Ybiv From E. Coli K12
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Transition State Analogue of Ybiv From E. Coli K12 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F804
b:55.5
occ:1.00
|
F1
|
D:AF3804
|
0.0
|
55.5
|
1.0
|
|
AL
|
D:AF3804
|
1.7
|
55.4
|
1.0
|
|
ND2
|
D:ASN218
|
2.8
|
74.7
|
1.0
|
|
NZ
|
D:LYS192
|
2.8
|
26.7
|
1.0
|
|
F3
|
D:AF3804
|
2.9
|
56.8
|
1.0
|
|
F2
|
D:AF3804
|
2.9
|
54.8
|
1.0
|
|
OD1
|
D:ASP9
|
2.9
|
33.8
|
1.0
|
|
N
|
D:GLY45
|
3.3
|
25.6
|
1.0
|
|
O
|
D:HOH889
|
3.4
|
55.0
|
1.0
|
|
CE
|
D:LYS192
|
3.4
|
32.2
|
1.0
|
|
CA
|
D:SER44
|
3.6
|
23.3
|
1.0
|
|
CG
|
D:ASN218
|
3.8
|
68.5
|
1.0
|
|
OG
|
D:SER44
|
3.8
|
22.8
|
1.0
|
|
C
|
D:SER44
|
3.9
|
24.6
|
1.0
|
|
CG
|
D:ASP9
|
3.9
|
31.6
|
1.0
|
|
OD1
|
D:ASN218
|
4.0
|
74.8
|
1.0
|
|
CB
|
D:SER44
|
4.0
|
22.8
|
1.0
|
|
O
|
D:HOH899
|
4.2
|
40.9
|
1.0
|
|
OD2
|
D:ASP9
|
4.3
|
28.7
|
1.0
|
|
CA
|
D:GLY45
|
4.3
|
25.2
|
1.0
|
|
O
|
D:ALA43
|
4.4
|
23.3
|
1.0
|
|
OD1
|
D:ASP219
|
4.4
|
28.1
|
1.0
|
|
MG
|
D:MG808
|
4.5
|
32.9
|
1.0
|
|
OD1
|
D:ASN68
|
4.7
|
39.5
|
1.0
|
|
N
|
D:SER44
|
4.8
|
24.0
|
1.0
|
|
CD
|
D:LYS192
|
4.9
|
32.9
|
1.0
|
|
N
|
D:MET10
|
4.9
|
27.5
|
1.0
|
|
Reference:
A.Roberts,
S.Y.Lee,
E.Mccullagh,
R.E.Silversmith,
D.E.Wemmer.
Ybiv From Escherichia Coli K12 Is A Had Phosphatase. Proteins V. 58 790 2005.
ISSN: ISSN 0887-3585
PubMed: 15657928
DOI: 10.1002/PROT.20267
Page generated: Mon Jul 14 11:47:44 2025
|
