Atomistry » Fluorine » PDB 1rw8-1uda » 1svt
Atomistry »
  Fluorine »
    PDB 1rw8-1uda »
      1svt »

Fluorine in PDB 1svt: Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7

Protein crystallography data

The structure of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7, PDB code: 1svt was solved by C.Chaudhry, A.L.Horwich, A.T.Brunger, P.D.Adams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 2.81
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 255.546, 266.855, 187.049, 90.00, 90.00, 90.00
R / Rfree (%) 24.7 / 27.4

Other elements in 1svt:

The structure of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms
Aluminium (Al) 7 atoms
Potassium (K) 7 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Fluorine atom in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 (pdb code 1svt). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 21 binding sites of Fluorine where determined in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7, PDB code: 1svt:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 1 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:2.8
occ:1.00
 F1 A:AF3602 0.0 2.8 1.0
MG A:MG601 1.8 2.0 1.0
AL A:AF3602 1.9 7.2 1.0
O2A A:ADP600 2.1 2.0 1.0
O1B A:ADP600 2.5 2.0 1.0
OD1 A:ASP87 2.9 2.0 1.0
F2 A:AF3602 3.0 10.1 1.0
PB A:ADP600 3.2 2.0 1.0
PA A:ADP600 3.2 2.2 1.0
F3 A:AF3602 3.4 2.0 1.0
O3B A:ADP600 3.4 3.6 1.0
O3A A:ADP600 3.5 2.6 1.0
CG A:ASP87 4.0 2.4 1.0
O1A A:ADP600 4.0 2.0 1.0
K A:K603 4.1 16.4 1.0
OD2 A:ASP398 4.3 8.1 1.0
OD2 A:ASP87 4.3 4.2 1.0
O A:SER151 4.5 2.6 1.0
O5' A:ADP600 4.6 2.0 1.0
O2B A:ADP600 4.7 2.0 1.0
C5' A:ADP600 4.8 2.4 1.0
O A:HOH615 4.9 25.2 1.0

Fluorine binding site 2 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 2 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:10.1
occ:1.00
 F2 A:AF3602 0.0 10.1 1.0
AL A:AF3602 1.8 7.2 1.0
O3B A:ADP600 2.0 3.6 1.0
N A:GLY88 2.4 2.0 1.0
O1B A:ADP600 2.4 2.0 1.0
OD1 A:ASP87 2.5 2.0 1.0
PB A:ADP600 2.6 2.0 1.0
F3 A:AF3602 2.9 2.0 1.0
F1 A:AF3602 3.0 2.8 1.0
C A:ASP87 3.1 2.0 1.0
N A:THR89 3.1 2.1 1.0
CA A:GLY88 3.2 2.1 1.0
MG A:MG601 3.2 2.0 1.0
OG1 A:THR89 3.2 2.6 1.0
CA A:ASP87 3.3 2.0 1.0
O2B A:ADP600 3.3 2.0 1.0
CG A:ASP87 3.4 2.4 1.0
C A:GLY88 3.5 2.4 1.0
O A:HOH615 3.6 25.2 1.0
CB A:ASP87 3.9 2.4 1.0
O3A A:ADP600 3.9 2.6 1.0
O2A A:ADP600 4.1 2.0 1.0
N A:THR90 4.1 2.1 1.0
O A:ASP87 4.2 2.0 1.0
CA A:THR89 4.3 2.0 1.0
CB A:THR89 4.3 2.0 1.0
OD2 A:ASP87 4.4 4.2 1.0
OD2 A:ASP398 4.5 8.1 1.0
O A:GLY88 4.6 2.5 1.0
N A:ASP87 4.7 2.0 1.0
C A:THR89 4.7 2.0 1.0
PA A:ADP600 4.8 2.2 1.0
CG2 A:THR89 4.8 2.1 1.0
OG1 A:THR90 4.9 2.0 1.0

Fluorine binding site 3 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 3 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F602

b:2.0
occ:1.00
 F3 A:AF3602 0.0 2.0 1.0
AL A:AF3602 1.8 7.2 1.0
OG1 A:THR89 2.7 2.6 1.0
O3B A:ADP600 2.8 3.6 1.0
N A:GLY53 2.9 2.2 1.0
F2 A:AF3602 2.9 10.1 1.0
F1 A:AF3602 3.4 2.8 1.0
OG1 A:THR90 3.4 2.0 1.0
OD1 A:ASP52 3.6 5.6 1.0
CA A:ASP52 3.6 2.3 1.0
K A:K603 3.6 16.4 1.0
C A:ASP52 3.7 2.0 1.0
O A:HOH615 3.7 25.2 1.0
CA A:GLY53 3.8 2.9 1.0
N A:THR90 4.0 2.1 1.0
PB A:ADP600 4.0 2.0 1.0
CB A:THR89 4.1 2.0 1.0
O A:LYS51 4.2 3.0 1.0
CG A:ASP52 4.3 4.3 1.0
CB A:ASP52 4.4 2.9 1.0
CB A:THR90 4.4 2.3 1.0
O1B A:ADP600 4.4 2.0 1.0
O3A A:ADP600 4.4 2.6 1.0
N A:THR89 4.5 2.1 1.0
OD2 A:ASP398 4.5 8.1 1.0
OD1 A:ASP87 4.6 2.0 1.0
N A:VAL54 4.6 2.6 1.0
N A:ASP52 4.7 3.3 1.0
MG A:MG601 4.7 2.0 1.0
CA A:THR89 4.7 2.0 1.0
C A:GLY53 4.8 3.0 1.0
CA A:THR90 4.8 2.0 1.0
O A:ASP52 4.8 2.0 1.0
C A:THR89 4.8 2.0 1.0
C A:LYS51 4.9 3.3 1.0
O2A A:ADP600 4.9 2.0 1.0
CG2 A:THR89 4.9 2.1 1.0

Fluorine binding site 4 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 4 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:2.1
occ:1.00
 F1 B:AF3602 0.0 2.1 1.0
MG B:MG601 1.8 2.0 1.0
AL B:AF3602 1.9 8.0 1.0
O2A B:ADP600 2.0 2.6 1.0
O1B B:ADP600 2.3 2.0 1.0
PB B:ADP600 2.9 2.2 1.0
OD1 B:ASP87 3.0 2.0 1.0
PA B:ADP600 3.1 3.2 1.0
F2 B:AF3602 3.2 10.1 1.0
O3B B:ADP600 3.2 3.2 1.0
O3A B:ADP600 3.2 2.5 1.0
F3 B:AF3602 3.4 2.0 1.0
O1A B:ADP600 3.8 2.0 1.0
K B:K603 3.9 16.3 1.0
CG B:ASP87 4.1 2.4 1.0
OD2 B:ASP398 4.2 8.1 1.0
O2B B:ADP600 4.4 2.6 1.0
O5' B:ADP600 4.4 2.1 1.0
OD2 B:ASP87 4.5 4.1 1.0
C5' B:ADP600 4.7 2.5 1.0
O B:SER151 4.8 2.4 1.0
N B:GLY88 5.0 2.0 1.0

Fluorine binding site 5 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 5 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:10.1
occ:1.00
 F2 B:AF3602 0.0 10.1 1.0
AL B:AF3602 1.8 8.0 1.0
O3B B:ADP600 2.1 3.2 1.0
OG1 B:THR89 2.6 2.3 1.0
N B:GLY88 2.7 2.0 1.0
F3 B:AF3602 2.8 2.0 1.0
OD1 B:ASP87 2.9 2.0 1.0
PB B:ADP600 2.9 2.2 1.0
N B:THR89 2.9 2.0 1.0
O1B B:ADP600 3.0 2.0 1.0
F1 B:AF3602 3.2 2.1 1.0
C B:ASP87 3.2 2.0 1.0
CA B:ASP87 3.4 2.0 1.0
CA B:GLY88 3.5 2.0 1.0
C B:GLY88 3.6 2.0 1.0
O2B B:ADP600 3.6 2.6 1.0
CG B:ASP87 3.8 2.4 1.0
CB B:THR89 3.8 2.0 1.0
MG B:MG601 3.9 2.0 1.0
CA B:THR89 3.9 2.0 1.0
N B:THR90 3.9 2.0 1.0
OD2 B:ASP398 4.1 8.1 1.0
O B:ASP87 4.1 2.0 1.0
CB B:ASP87 4.1 2.0 1.0
CG2 B:THR89 4.3 2.0 1.0
O3A B:ADP600 4.3 2.5 1.0
C B:THR89 4.5 2.0 1.0
OG1 B:THR90 4.5 2.5 1.0
N B:ASP87 4.7 2.1 1.0
O2A B:ADP600 4.7 2.6 1.0
OD1 B:ASP52 4.7 5.5 1.0
O B:GLY88 4.7 2.3 1.0
OD2 B:ASP87 4.9 4.1 1.0
CB B:THR90 5.0 2.0 1.0

Fluorine binding site 6 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 6 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F602

b:2.0
occ:1.00
 F3 B:AF3602 0.0 2.0 1.0
AL B:AF3602 1.8 8.0 1.0
O3B B:ADP600 2.5 3.2 1.0
OG1 B:THR90 2.7 2.5 1.0
F2 B:AF3602 2.8 10.1 1.0
N B:GLY53 2.8 2.0 1.0
OG1 B:THR89 3.0 2.3 1.0
K B:K603 3.2 16.3 1.0
F1 B:AF3602 3.4 2.1 1.0
CA B:GLY53 3.5 2.3 1.0
N B:THR90 3.7 2.0 1.0
C B:ASP52 3.7 2.0 1.0
PB B:ADP600 3.7 2.2 1.0
CA B:ASP52 3.8 2.2 1.0
CB B:THR90 3.8 2.0 1.0
OD1 B:ASP52 4.0 5.5 1.0
O B:LYS51 4.0 2.8 1.0
O3A B:ADP600 4.1 2.5 1.0
CB B:THR89 4.2 2.0 1.0
CA B:THR90 4.3 2.0 1.0
O1B B:ADP600 4.3 2.0 1.0
N B:THR89 4.5 2.0 1.0
C B:THR89 4.6 2.0 1.0
C B:GLY53 4.6 2.5 1.0
CG B:ASP52 4.7 4.1 1.0
N B:VAL54 4.7 2.4 1.0
CA B:THR89 4.7 2.0 1.0
N B:ASP52 4.7 3.0 1.0
C B:LYS51 4.8 3.0 1.0
CB B:ASP52 4.8 2.7 1.0
O B:ASP52 4.8 2.0 1.0
O2B B:ADP600 4.8 2.6 1.0
OD2 B:ASP398 4.9 8.1 1.0
OD1 B:ASP87 4.9 2.0 1.0
O2A B:ADP600 4.9 2.6 1.0
MG B:MG601 4.9 2.0 1.0
PA B:ADP600 4.9 3.2 1.0

Fluorine binding site 7 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 7 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:2.0
occ:1.00
 F1 C:AF3602 0.0 2.0 1.0
MG C:MG601 1.6 2.0 1.0
AL C:AF3602 1.9 8.2 1.0
O2A C:ADP600 2.1 2.4 1.0
O1B C:ADP600 2.5 2.0 1.0
OD1 C:ASP87 2.9 2.9 1.0
F2 C:AF3602 3.1 10.6 1.0
PB C:ADP600 3.2 2.5 1.0
PA C:ADP600 3.3 2.0 1.0
F3 C:AF3602 3.4 2.0 1.0
O3B C:ADP600 3.5 3.2 1.0
O3A C:ADP600 3.5 2.6 1.0
OD2 C:ASP398 4.0 8.5 1.0
O1A C:ADP600 4.1 2.0 1.0
CG C:ASP87 4.1 3.1 1.0
K C:K603 4.2 15.8 1.0
OD2 C:ASP87 4.5 4.5 1.0
O5' C:ADP600 4.5 2.1 1.0
O C:SER151 4.6 2.4 1.0
O2B C:ADP600 4.7 2.3 1.0
C5' C:ADP600 4.8 2.4 1.0

Fluorine binding site 8 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 8 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:10.6
occ:1.00
 F2 C:AF3602 0.0 10.6 1.0
AL C:AF3602 1.8 8.2 1.0
O3B C:ADP600 1.9 3.2 1.0
N C:GLY88 2.5 2.0 1.0
O1B C:ADP600 2.5 2.0 1.0
PB C:ADP600 2.6 2.5 1.0
OD1 C:ASP87 2.6 2.9 1.0
F3 C:AF3602 2.9 2.0 1.0
OG1 C:THR89 3.0 2.4 1.0
N C:THR89 3.0 2.0 1.0
F1 C:AF3602 3.1 2.0 1.0
C C:ASP87 3.2 2.0 1.0
CA C:GLY88 3.3 2.0 1.0
CA C:ASP87 3.4 2.0 1.0
MG C:MG601 3.5 2.0 1.0
O2B C:ADP600 3.5 2.3 1.0
C C:GLY88 3.6 2.4 1.0
CG C:ASP87 3.6 3.1 1.0
O3A C:ADP600 4.0 2.6 1.0
N C:THR90 4.0 2.0 1.0
CA C:THR89 4.1 2.0 1.0
CB C:ASP87 4.1 2.4 1.0
CB C:THR89 4.1 2.0 1.0
OD2 C:ASP398 4.2 8.5 1.0
O C:ASP87 4.2 2.0 1.0
O2A C:ADP600 4.3 2.4 1.0
OG1 C:THR90 4.6 2.1 1.0
C C:THR89 4.6 2.0 1.0
CG2 C:THR89 4.6 2.0 1.0
N C:ASP87 4.7 2.0 1.0
O C:GLY88 4.7 2.9 1.0
OD2 C:ASP87 4.8 4.5 1.0
PA C:ADP600 4.9 2.0 1.0

Fluorine binding site 9 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 9 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F602

b:2.0
occ:1.00
 F3 C:AF3602 0.0 2.0 1.0
AL C:AF3602 1.8 8.2 1.0
O3B C:ADP600 2.7 3.2 1.0
N C:GLY53 2.8 2.1 1.0
OG1 C:THR90 2.9 2.1 1.0
F2 C:AF3602 2.9 10.6 1.0
OG1 C:THR89 3.1 2.4 1.0
K C:K603 3.4 15.8 1.0
F1 C:AF3602 3.4 2.0 1.0
CA C:GLY53 3.6 2.5 1.0
C C:ASP52 3.7 2.0 1.0
CA C:ASP52 3.7 2.4 1.0
OD1 C:ASP52 3.8 6.1 1.0
PB C:ADP600 3.8 2.5 1.0
N C:THR90 3.9 2.0 1.0
O C:LYS51 3.9 2.9 1.0
CB C:THR90 4.0 2.0 1.0
O3A C:ADP600 4.3 2.6 1.0
CB C:THR89 4.3 2.0 1.0
O1B C:ADP600 4.4 2.0 1.0
CA C:THR90 4.5 2.0 1.0
CG C:ASP52 4.6 4.3 1.0
N C:THR89 4.6 2.0 1.0
OD2 C:ASP398 4.6 8.5 1.0
N C:ASP52 4.6 2.8 1.0
C C:LYS51 4.7 2.7 1.0
CB C:ASP52 4.7 3.0 1.0
C C:GLY53 4.7 2.8 1.0
MG C:MG601 4.8 2.0 1.0
C C:THR89 4.8 2.0 1.0
O2A C:ADP600 4.8 2.4 1.0
O C:ASP52 4.8 2.0 1.0
N C:VAL54 4.8 2.8 1.0
CA C:THR89 4.8 2.0 1.0
OD1 C:ASP87 4.9 2.9 1.0
PA C:ADP600 4.9 2.0 1.0
O2B C:ADP600 5.0 2.3 1.0

Fluorine binding site 10 out of 21 in 1svt

Go back to Fluorine Binding Sites List in 1svt
Fluorine binding site 10 out of 21 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F602

b:2.0
occ:1.00
 F1 D:AF3602 0.0 2.0 1.0
MG D:MG601 1.7 2.0 1.0
AL D:AF3602 1.9 8.1 1.0
O2A D:ADP600 2.0 2.0 1.0
O1B D:ADP600 2.6 2.0 1.0
PA D:ADP600 3.0 2.3 1.0
F2 D:AF3602 3.0 10.1 1.0
OD1 D:ASP87 3.1 2.2 1.0
PB D:ADP600 3.1 2.5 1.0
O D:HOH611 3.1 51.0 1.0
O3B D:ADP600 3.4 3.4 1.0
O3A D:ADP600 3.4 2.1 1.0
F3 D:AF3602 3.4 2.0 1.0
O1A D:ADP600 3.7 2.0 1.0
K D:K603 3.9 16.7 1.0
CG D:ASP87 4.2 2.5 1.0
O5' D:ADP600 4.4 2.0 1.0
OD2 D:ASP398 4.5 8.1 1.0
OD2 D:ASP87 4.6 3.5 1.0
C5' D:ADP600 4.6 2.4 1.0
O2B D:ADP600 4.6 2.3 1.0
O D:SER151 4.8 2.6 1.0
NZ D:LYS51 4.9 2.0 1.0

Reference:

C.Chaudhry, A.L.Horwich, A.T.Brunger, P.D.Adams. Exploring the Structural Dynamics of the E.Coli Chaperonin Groel Using Translation-Libration-Screw Crystallographic Refinement of Intermediate States. J.Mol.Biol. V. 342 229 2004.
ISSN: ISSN 0022-2836
PubMed: 15313620
DOI: 10.1016/J.JMB.2004.07.015
Page generated: Mon Jul 14 11:57:22 2025

Last articles

Mg in 2DYA
Mg in 2DY9
Mg in 2DW6
Mg in 2DXI
Mg in 2DY1
Mg in 2DY0
Mg in 2DXE
Mg in 2DWP
Mg in 2DSD
Mg in 2DRE
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy