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Fluorine in PDB 1tsn: Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate

Enzymatic activity of Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate

All present enzymatic activity of Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate:
2.1.1.45;

Protein crystallography data

The structure of Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate, PDB code: 1tsn was solved by D.C.Hyatt, F.Maley, W.R.Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.00 / 2.20
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.100, 72.100, 115.270, 90.00, 90.00, 120.00
R / Rfree (%) 17.8 / n/a

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate (pdb code 1tsn). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate, PDB code: 1tsn:

Fluorine binding site 1 out of 1 in 1tsn

Go back to Fluorine Binding Sites List in 1tsn
Fluorine binding site 1 out of 1 in the Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Thymidylate Synthase Ternary Complex with Fdump and Methylenetetrahydrofolate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F265

b:19.5
occ:1.00
F5 A:UFP265 0.0 19.5 1.0
C5 A:UFP265 1.3 17.9 1.0
C11 A:C2F266 2.3 24.3 1.0
C6 A:UFP265 2.5 19.3 1.0
C4 A:UFP265 2.5 18.1 1.0
O4 A:UFP265 2.9 19.1 1.0
SG A:CYS146 3.2 21.9 1.0
OH A:TYR94 3.2 17.6 1.0
N5 A:C2F266 3.2 21.9 1.0
C6 A:C2F266 3.3 19.3 1.0
O A:HOH285 3.5 35.7 1.0
C7 A:C2F266 3.6 21.2 1.0
O A:HOH272 3.7 20.0 1.0
N3 A:UFP265 3.7 16.8 1.0
CB A:CYS146 3.8 16.2 1.0
CH2 A:TRP80 3.8 19.5 1.0
N1 A:UFP265 3.8 15.3 1.0
CZ2 A:TRP80 3.9 18.5 1.0
C2 A:UFP265 4.3 15.9 1.0
CZ A:TYR94 4.3 16.1 1.0
C4A A:C2F266 4.3 19.4 1.0
CE2 A:TYR94 4.5 16.0 1.0
N8 A:C2F266 4.5 20.0 1.0
N A:CYS146 4.6 13.4 1.0
CD2 A:LEU143 4.7 26.4 1.0
CD2 A:HIS147 4.8 12.3 1.0
C9 A:C2F266 4.8 20.4 1.0
O4' A:UFP265 4.8 16.1 1.0
O A:HOH379 4.8 33.6 1.0
CA A:CYS146 4.8 14.5 1.0
C8A A:C2F266 4.8 18.2 1.0
CZ3 A:TRP80 4.9 19.8 1.0
C1' A:UFP265 5.0 13.6 1.0
NE2 A:HIS147 5.0 12.5 1.0

Reference:

D.C.Hyatt, F.Maley, W.R.Montfort. Use of Strain in A Stereospecific Catalytic Mechanism: Crystal Structures of Escherichia Coli Thymidylate Synthase Bound to Fdump and Methylenetetrahydrofolate. Biochemistry V. 36 4585 1997.
ISSN: ISSN 0006-2960
PubMed: 9109668
DOI: 10.1021/BI962936J
Page generated: Wed Jul 31 12:58:53 2024

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