Atomistry » Fluorine » PDB 1xz3-1zzr » 1zp0
Atomistry »
  Fluorine »
    PDB 1xz3-1zzr »
      1zp0 »

Fluorine in PDB 1zp0: Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone

Enzymatic activity of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone

All present enzymatic activity of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone:
1.3.5.1;

Protein crystallography data

The structure of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone, PDB code: 1zp0 was solved by F.Sun, X.Huo, Y.Zhai, A.Wang, J.Xu, D.Su, M.Bartlam, Z.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 3.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.330, 83.531, 294.180, 90.00, 90.00, 90.00
R / Rfree (%) 26.8 / 29.3

Other elements in 1zp0:

The structure of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone also contains other interesting chemical elements:

Iron (Fe) 10 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone (pdb code 1zp0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone, PDB code: 1zp0:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 1zp0

Go back to Fluorine Binding Sites List in 1zp0
Fluorine binding site 1 out of 6 in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F308

b:90.0
occ:1.00
F1 C:TTF308 0.0 90.0 1.0
C8 C:TTF308 1.3 79.9 1.0
F2 C:TTF308 2.1 92.5 1.0
F3 C:TTF308 2.1 84.5 1.0
C7 C:TTF308 2.3 69.2 1.0
C6 C:TTF308 2.8 49.8 1.0
CG B:PRO169 3.1 56.8 1.0
O2 C:TTF308 3.4 88.5 1.0
CB B:PRO169 3.6 68.3 1.0
CG C:MET39 3.7 56.1 1.0
SD C:MET39 4.0 60.2 1.0
C5 C:TTF308 4.3 53.1 1.0
CD B:PRO169 4.5 53.2 1.0
CG1 C:ILE43 4.6 63.9 1.0
S1 C:TTF308 4.6 59.8 1.0
C3 C:TTF308 4.8 50.7 1.0
OG C:SER42 4.9 92.6 1.0
CD1 C:ILE43 4.9 68.0 1.0
O C:MET39 4.9 69.4 1.0

Fluorine binding site 2 out of 6 in 1zp0

Go back to Fluorine Binding Sites List in 1zp0
Fluorine binding site 2 out of 6 in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F308

b:92.5
occ:1.00
F2 C:TTF308 0.0 92.5 1.0
C8 C:TTF308 1.3 79.9 1.0
F1 C:TTF308 2.1 90.0 1.0
F3 C:TTF308 2.2 84.5 1.0
C7 C:TTF308 2.3 69.2 1.0
C6 C:TTF308 2.8 49.8 1.0
O2 C:TTF308 3.4 88.5 1.0
CB B:PRO169 3.5 68.3 1.0
CG B:PRO169 3.6 56.8 1.0
CZ3 B:TRP172 3.9 85.9 1.0
CE3 B:TRP172 4.2 79.3 1.0
CG2 C:ILE30 4.3 75.1 1.0
C5 C:TTF308 4.3 53.1 1.0
CZ2 B:TRP173 4.5 81.6 1.0
CA B:PRO169 4.6 60.0 1.0
NE1 B:TRP173 4.7 81.7 1.0
CE2 B:TRP173 4.9 79.6 1.0
O1 C:TTF308 5.0 59.2 1.0
CH2 B:TRP172 5.0 87.6 1.0

Fluorine binding site 3 out of 6 in 1zp0

Go back to Fluorine Binding Sites List in 1zp0
Fluorine binding site 3 out of 6 in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F308

b:84.5
occ:1.00
F3 C:TTF308 0.0 84.5 1.0
C8 C:TTF308 1.4 79.9 1.0
F1 C:TTF308 2.1 90.0 1.0
F2 C:TTF308 2.2 92.5 1.0
C7 C:TTF308 2.6 69.2 1.0
O2 C:TTF308 3.1 88.5 1.0
CZ3 C:TRP35 3.4 0.5 1.0
CH2 C:TRP35 3.6 0.5 1.0
CD1 C:ILE43 3.8 68.0 1.0
C6 C:TTF308 3.8 49.8 1.0
CG1 C:ILE43 4.0 63.9 1.0
SD C:MET39 4.1 60.2 1.0
CG C:MET39 4.4 56.1 1.0
CE3 C:TRP35 4.6 0.7 1.0
CZ2 C:TRP35 4.9 0.8 1.0
CG B:PRO169 5.0 56.8 1.0

Fluorine binding site 4 out of 6 in 1zp0

Go back to Fluorine Binding Sites List in 1zp0
Fluorine binding site 4 out of 6 in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F309

b:0.9
occ:1.00
F1 D:TTF309 0.0 0.9 1.0
C8 D:TTF309 1.3 0.4 1.0
F2 D:TTF309 2.1 0.7 1.0
F3 D:TTF309 2.1 0.5 1.0
C7 D:TTF309 2.3 0.8 1.0
C6 D:TTF309 2.7 0.3 1.0
O D:ALA60 2.8 93.8 1.0
C D:ALA60 3.4 89.9 1.0
O2 D:TTF309 3.4 0.1 1.0
CA D:TYR61 3.6 96.5 1.0
N D:TYR61 3.7 94.6 1.0
CG D:PRO64 4.1 0.4 1.0
SG D:CYS127 4.2 0.7 1.0
C5 D:TTF309 4.2 0.9 1.0
CB D:ALA60 4.3 94.4 1.0
CB D:CYS127 4.4 99.3 1.0
CB D:TYR61 4.4 98.1 1.0
CA D:ALA60 4.4 84.6 1.0
C D:TYR61 4.6 97.3 1.0
O D:TYR61 4.6 1.0 1.0
CB D:PRO64 4.6 0.4 1.0
CA D:CYS127 4.6 98.3 1.0
O D:CYS127 4.7 98.1 1.0
CD1 D:TYR61 4.8 0.7 1.0
C D:CYS127 5.0 97.8 1.0

Fluorine binding site 5 out of 6 in 1zp0

Go back to Fluorine Binding Sites List in 1zp0
Fluorine binding site 5 out of 6 in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F309

b:0.7
occ:1.00
F2 D:TTF309 0.0 0.7 1.0
C8 D:TTF309 1.3 0.4 1.0
F1 D:TTF309 2.1 0.9 1.0
F3 D:TTF309 2.2 0.5 1.0
C7 D:TTF309 2.3 0.8 1.0
C6 D:TTF309 3.0 0.3 1.0
O2 D:TTF309 3.3 0.1 1.0
CG1 D:VAL130 3.6 75.4 1.0
S1 D:TTF309 3.8 0.3 1.0
CB D:VAL130 3.9 80.9 1.0
C5 D:TTF309 4.2 0.9 1.0
CG2 D:VAL130 4.4 86.4 1.0
O D:CYS127 4.4 98.1 1.0
C3 D:TTF309 4.4 0.8 1.0
O D:ALA60 4.7 93.8 1.0
CA D:CYS127 4.8 98.3 1.0
CA D:TYR61 4.9 96.5 1.0

Fluorine binding site 6 out of 6 in 1zp0

Go back to Fluorine Binding Sites List in 1zp0
Fluorine binding site 6 out of 6 in the Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Mitochondrial Respiratory Complex II Bound with 3-Nitropropionate and 2-Thenoyltrifluoroacetone within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F309

b:0.5
occ:1.00
F3 D:TTF309 0.0 0.5 1.0
C8 D:TTF309 1.4 0.4 1.0
F1 D:TTF309 2.1 0.9 1.0
F2 D:TTF309 2.2 0.7 1.0
C7 D:TTF309 2.6 0.8 1.0
O2 D:TTF309 3.1 0.1 1.0
N D:TYR61 3.2 94.6 1.0
CA D:TYR61 3.2 96.5 1.0
C D:ALA60 3.4 89.9 1.0
CB D:TYR61 3.5 98.1 1.0
O D:ALA60 3.5 93.8 1.0
O D:LEU57 3.8 75.2 1.0
CB D:ALA60 3.8 94.4 1.0
C6 D:TTF309 3.8 0.3 1.0
CA D:ALA60 4.2 84.6 1.0
CG D:TYR61 4.5 0.4 1.0
C D:TYR61 4.7 97.3 1.0
CD1 D:TYR61 4.7 0.7 1.0
C D:LEU57 4.9 72.3 1.0

Reference:

F.Sun, X.Huo, Y.Zhai, A.Wang, J.Xu, D.Su, M.Bartlam, Z.Rao. Crystal Structure of Mitochondrial Respiratory Membrane Protein Complex II Cell(Cambridge,Mass.) V. 121 1043 2005.
ISSN: ISSN 0092-8674
PubMed: 15989954
DOI: 10.1016/J.CELL.2005.05.025
Page generated: Mon Jul 14 12:32:30 2025

Last articles

Mg in 3JB3
Mg in 3JB2
Mg in 3JAP
Mg in 3JAM
Mg in 3JAT
Mg in 3JAW
Mg in 3JAS
Mg in 3JAR
Mg in 3J81
Mg in 3JAO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy