Fluorine in PDB 2cnw: GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
Protein crystallography data
The structure of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2cnw
was solved by
P.J.Focia,
J.Gawronski-Salerno,
J.S.Coon V,
D.M.Freymann,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
14.68 /
2.39
|
|
Space group
|
P 32
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
188.686,
188.686,
44.588,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
18.3 /
25.3
|
Other elements in 2cnw:
The structure of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Fluorine atom in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
(pdb code 2cnw). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the
GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2cnw:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 1 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1007
b:18.1
occ:1.00
|
F1
|
A:ALF1007
|
0.0
|
18.1
|
1.0
|
|
AL
|
A:ALF1007
|
1.8
|
16.6
|
1.0
|
|
F2
|
A:ALF1007
|
2.5
|
17.8
|
1.0
|
|
F4
|
A:ALF1007
|
2.5
|
16.5
|
1.0
|
|
O
|
A:HOH2048
|
2.6
|
11.1
|
1.0
|
|
O2B
|
A:GDP1001
|
2.6
|
12.5
|
1.0
|
|
N
|
A:GLY108
|
2.8
|
15.7
|
1.0
|
|
CA
|
A:GLN107
|
3.1
|
16.4
|
1.0
|
|
N
|
A:GLY190
|
3.3
|
19.4
|
1.0
|
|
CA
|
A:GLY190
|
3.3
|
19.4
|
1.0
|
|
NZ
|
A:LYS111
|
3.4
|
12.9
|
1.0
|
|
C
|
A:GLN107
|
3.4
|
16.4
|
1.0
|
|
F3
|
A:ALF1007
|
3.5
|
13.6
|
1.0
|
|
O3'
|
D:GDP1001
|
3.5
|
15.3
|
1.0
|
|
CB
|
A:GLN107
|
3.8
|
16.5
|
1.0
|
|
O
|
D:HOH2085
|
3.8
|
14.0
|
1.0
|
|
CA
|
A:GLY108
|
3.9
|
14.9
|
1.0
|
|
PB
|
A:GDP1001
|
3.9
|
10.6
|
1.0
|
|
O
|
A:LEU106
|
4.0
|
14.7
|
1.0
|
|
CG
|
A:GLN107
|
4.1
|
18.4
|
1.0
|
|
O1B
|
A:GDP1001
|
4.1
|
8.9
|
1.0
|
|
N
|
A:GLN107
|
4.2
|
15.6
|
1.0
|
|
CE
|
A:LYS111
|
4.3
|
15.1
|
1.0
|
|
C4'
|
D:GDP1001
|
4.3
|
16.1
|
1.0
|
|
C
|
A:GLY190
|
4.3
|
19.8
|
1.0
|
|
C
|
A:LEU106
|
4.5
|
14.8
|
1.0
|
|
C3'
|
D:GDP1001
|
4.5
|
16.4
|
1.0
|
|
O
|
A:GLY190
|
4.6
|
19.0
|
1.0
|
|
C
|
A:ALA189
|
4.6
|
19.3
|
1.0
|
|
O
|
A:GLN107
|
4.7
|
17.0
|
1.0
|
|
O3B
|
A:GDP1001
|
4.7
|
9.5
|
1.0
|
|
NH1
|
A:ARG138
|
4.9
|
12.3
|
1.0
|
|
O
|
A:HOH2085
|
4.9
|
13.7
|
1.0
|
|
N
|
A:SER109
|
5.0
|
14.2
|
1.0
|
|
C
|
A:GLY108
|
5.0
|
14.5
|
1.0
|
|
Fluorine binding site 2 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 2 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1007
b:17.8
occ:1.00
|
F2
|
A:ALF1007
|
0.0
|
17.8
|
1.0
|
|
AL
|
A:ALF1007
|
1.8
|
16.6
|
1.0
|
|
F1
|
A:ALF1007
|
2.5
|
18.1
|
1.0
|
|
F3
|
A:ALF1007
|
2.5
|
13.6
|
1.0
|
|
O3'
|
D:GDP1001
|
2.6
|
15.3
|
1.0
|
|
O2B
|
A:GDP1001
|
2.6
|
12.5
|
1.0
|
|
O
|
A:HOH2048
|
2.6
|
11.1
|
1.0
|
|
NH1
|
A:ARG138
|
2.7
|
12.3
|
1.0
|
|
C3'
|
D:GDP1001
|
3.1
|
16.4
|
1.0
|
|
CD
|
A:ARG138
|
3.2
|
18.6
|
1.0
|
|
C4'
|
D:GDP1001
|
3.3
|
16.1
|
1.0
|
|
F4
|
A:ALF1007
|
3.6
|
16.5
|
1.0
|
|
CZ
|
A:ARG138
|
3.7
|
16.5
|
1.0
|
|
NE
|
A:ARG138
|
3.9
|
17.3
|
1.0
|
|
N
|
A:GLY108
|
3.9
|
15.7
|
1.0
|
|
C5'
|
D:GDP1001
|
3.9
|
15.0
|
1.0
|
|
PB
|
A:GDP1001
|
4.1
|
10.6
|
1.0
|
|
CA
|
A:GLY108
|
4.3
|
14.9
|
1.0
|
|
O
|
D:HOH2085
|
4.3
|
14.0
|
1.0
|
|
MG
|
A:MG1002
|
4.3
|
12.8
|
1.0
|
|
CG
|
A:ARG138
|
4.3
|
19.8
|
1.0
|
|
O
|
A:HOH2058
|
4.5
|
13.1
|
1.0
|
|
O4'
|
D:GDP1001
|
4.6
|
15.6
|
1.0
|
|
C2'
|
D:GDP1001
|
4.6
|
16.5
|
1.0
|
|
O3B
|
A:GDP1001
|
4.6
|
9.5
|
1.0
|
|
O3A
|
A:GDP1001
|
4.7
|
10.1
|
1.0
|
|
CB
|
A:ARG138
|
4.7
|
19.2
|
1.0
|
|
OD2
|
A:ASP135
|
4.7
|
20.7
|
1.0
|
|
C
|
A:GLN107
|
4.8
|
16.4
|
1.0
|
|
NH2
|
A:ARG138
|
4.9
|
15.5
|
1.0
|
|
CA
|
A:GLN107
|
4.9
|
16.4
|
1.0
|
|
Fluorine binding site 3 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 3 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1007
b:13.6
occ:1.00
|
F3
|
A:ALF1007
|
0.0
|
13.6
|
1.0
|
|
AL
|
A:ALF1007
|
1.8
|
16.6
|
1.0
|
|
MG
|
A:MG1002
|
2.0
|
12.8
|
1.0
|
|
F4
|
A:ALF1007
|
2.5
|
16.5
|
1.0
|
|
F2
|
A:ALF1007
|
2.5
|
17.8
|
1.0
|
|
O2B
|
A:GDP1001
|
2.6
|
12.5
|
1.0
|
|
O
|
A:HOH2048
|
2.6
|
11.1
|
1.0
|
|
O
|
A:HOH2038
|
2.7
|
10.9
|
1.0
|
|
O
|
A:HOH2085
|
2.9
|
13.7
|
1.0
|
|
O
|
A:HOH2058
|
2.9
|
13.1
|
1.0
|
|
O3B
|
A:GDP1001
|
3.1
|
9.5
|
1.0
|
|
CD
|
A:ARG138
|
3.2
|
18.6
|
1.0
|
|
OD2
|
A:ASP135
|
3.3
|
20.7
|
1.0
|
|
PB
|
A:GDP1001
|
3.4
|
10.6
|
1.0
|
|
NH1
|
A:ARG138
|
3.4
|
12.3
|
1.0
|
|
F1
|
A:ALF1007
|
3.5
|
18.1
|
1.0
|
|
NE
|
A:ARG138
|
3.9
|
17.3
|
1.0
|
|
CZ
|
A:ARG138
|
4.0
|
16.5
|
1.0
|
|
OG1
|
A:THR112
|
4.0
|
14.9
|
1.0
|
|
CG
|
A:ARG138
|
4.4
|
19.8
|
1.0
|
|
O3A
|
A:GDP1001
|
4.5
|
10.1
|
1.0
|
|
CB
|
A:ARG138
|
4.5
|
19.2
|
1.0
|
|
CG
|
A:ASP135
|
4.5
|
22.5
|
1.0
|
|
O1B
|
A:GDP1001
|
4.6
|
8.9
|
1.0
|
|
O2A
|
A:GDP1001
|
4.7
|
8.7
|
1.0
|
|
O3'
|
D:GDP1001
|
4.8
|
15.3
|
1.0
|
|
N
|
A:GLY190
|
4.9
|
19.4
|
1.0
|
|
Fluorine binding site 4 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 4 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1007
b:16.5
occ:1.00
|
F4
|
A:ALF1007
|
0.0
|
16.5
|
1.0
|
|
AL
|
A:ALF1007
|
1.8
|
16.6
|
1.0
|
|
O
|
A:HOH2085
|
2.5
|
13.7
|
1.0
|
|
F3
|
A:ALF1007
|
2.5
|
13.6
|
1.0
|
|
F1
|
A:ALF1007
|
2.5
|
18.1
|
1.0
|
|
O2B
|
A:GDP1001
|
2.6
|
12.5
|
1.0
|
|
O
|
A:HOH2048
|
2.7
|
11.1
|
1.0
|
|
NZ
|
A:LYS111
|
2.9
|
12.9
|
1.0
|
|
CE
|
A:LYS111
|
2.9
|
15.1
|
1.0
|
|
N
|
A:GLY190
|
3.0
|
19.4
|
1.0
|
|
PB
|
A:GDP1001
|
3.2
|
10.6
|
1.0
|
|
MG
|
A:MG1002
|
3.2
|
12.8
|
1.0
|
|
O3B
|
A:GDP1001
|
3.2
|
9.5
|
1.0
|
|
O1B
|
A:GDP1001
|
3.5
|
8.9
|
1.0
|
|
F2
|
A:ALF1007
|
3.6
|
17.8
|
1.0
|
|
O
|
A:THR188
|
3.7
|
19.8
|
1.0
|
|
C
|
A:ALA189
|
3.7
|
19.3
|
1.0
|
|
CA
|
A:GLY190
|
3.8
|
19.4
|
1.0
|
|
CA
|
A:ALA189
|
3.8
|
19.1
|
1.0
|
|
OD2
|
A:ASP135
|
4.2
|
20.7
|
1.0
|
|
CD
|
A:LYS111
|
4.3
|
15.4
|
1.0
|
|
O
|
A:HOH2038
|
4.4
|
10.9
|
1.0
|
|
C
|
A:THR188
|
4.6
|
19.8
|
1.0
|
|
CB
|
A:LYS111
|
4.6
|
15.7
|
1.0
|
|
N
|
A:GLY108
|
4.7
|
15.7
|
1.0
|
|
N
|
A:ALA189
|
4.7
|
19.3
|
1.0
|
|
O
|
A:ALA189
|
4.7
|
20.0
|
1.0
|
|
O3A
|
A:GDP1001
|
4.7
|
10.1
|
1.0
|
|
OD1
|
A:ASP187
|
4.8
|
24.2
|
1.0
|
|
CG
|
A:LYS111
|
4.8
|
16.3
|
1.0
|
|
OG1
|
A:THR112
|
4.9
|
14.9
|
1.0
|
|
CB
|
A:ALA189
|
4.9
|
18.2
|
1.0
|
|
O
|
D:HOH2085
|
4.9
|
14.0
|
1.0
|
|
O
|
A:HOH2058
|
4.9
|
13.1
|
1.0
|
|
Fluorine binding site 5 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 5 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1007
b:19.6
occ:1.00
|
F1
|
B:ALF1007
|
0.0
|
19.6
|
1.0
|
|
AL
|
B:ALF1007
|
1.8
|
18.9
|
1.0
|
|
F2
|
B:ALF1007
|
2.5
|
19.1
|
1.0
|
|
F4
|
B:ALF1007
|
2.5
|
20.4
|
1.0
|
|
O
|
B:HOH2036
|
2.6
|
23.0
|
1.0
|
|
O2B
|
B:GDP1001
|
2.7
|
15.5
|
1.0
|
|
N
|
B:GLY108
|
3.0
|
17.8
|
1.0
|
|
CA
|
B:GLN107
|
3.0
|
17.9
|
1.0
|
|
CA
|
B:GLY190
|
3.3
|
23.2
|
1.0
|
|
NZ
|
B:LYS111
|
3.3
|
19.5
|
1.0
|
|
N
|
B:GLY190
|
3.3
|
23.1
|
1.0
|
|
C
|
B:GLN107
|
3.5
|
18.1
|
1.0
|
|
F3
|
B:ALF1007
|
3.5
|
19.9
|
1.0
|
|
O
|
B:LEU106
|
3.7
|
17.1
|
1.0
|
|
O3'
|
E:GDP1001
|
3.8
|
17.8
|
1.0
|
|
PB
|
B:GDP1001
|
3.9
|
14.2
|
1.0
|
|
N
|
B:GLN107
|
3.9
|
17.7
|
1.0
|
|
CB
|
B:GLN107
|
3.9
|
18.0
|
1.0
|
|
O1B
|
B:GDP1001
|
4.0
|
13.5
|
1.0
|
|
O
|
E:HOH2089
|
4.1
|
19.9
|
1.0
|
|
CE
|
B:LYS111
|
4.1
|
17.6
|
1.0
|
|
CG
|
B:GLN107
|
4.1
|
18.2
|
1.0
|
|
CA
|
B:GLY108
|
4.1
|
17.5
|
1.0
|
|
C
|
B:LEU106
|
4.2
|
17.8
|
1.0
|
|
C
|
B:GLY190
|
4.2
|
23.6
|
1.0
|
|
O
|
B:GLY190
|
4.4
|
23.4
|
1.0
|
|
C4'
|
E:GDP1001
|
4.5
|
18.4
|
1.0
|
|
C
|
B:ALA189
|
4.6
|
22.8
|
1.0
|
|
O
|
B:GLN107
|
4.7
|
18.5
|
1.0
|
|
O3B
|
B:GDP1001
|
4.7
|
13.3
|
1.0
|
|
C3'
|
E:GDP1001
|
4.8
|
18.4
|
1.0
|
|
N
|
B:SER109
|
4.9
|
16.7
|
1.0
|
|
Fluorine binding site 6 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 6 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1007
b:19.1
occ:1.00
|
F2
|
B:ALF1007
|
0.0
|
19.1
|
1.0
|
|
AL
|
B:ALF1007
|
1.8
|
18.9
|
1.0
|
|
O3'
|
E:GDP1001
|
2.4
|
17.8
|
1.0
|
|
O
|
B:HOH2036
|
2.5
|
23.0
|
1.0
|
|
F3
|
B:ALF1007
|
2.5
|
19.9
|
1.0
|
|
F1
|
B:ALF1007
|
2.5
|
19.6
|
1.0
|
|
O2B
|
B:GDP1001
|
2.5
|
15.5
|
1.0
|
|
NH1
|
B:ARG138
|
2.8
|
20.7
|
1.0
|
|
C3'
|
E:GDP1001
|
3.2
|
18.4
|
1.0
|
|
CD
|
B:ARG138
|
3.3
|
19.8
|
1.0
|
|
C4'
|
E:GDP1001
|
3.3
|
18.4
|
1.0
|
|
F4
|
B:ALF1007
|
3.5
|
20.4
|
1.0
|
|
CZ
|
B:ARG138
|
3.8
|
21.6
|
1.0
|
|
N
|
B:GLY108
|
3.9
|
17.8
|
1.0
|
|
NE
|
B:ARG138
|
4.0
|
20.6
|
1.0
|
|
PB
|
B:GDP1001
|
4.0
|
14.2
|
1.0
|
|
C5'
|
E:GDP1001
|
4.1
|
16.6
|
1.0
|
|
O
|
E:HOH2089
|
4.3
|
19.9
|
1.0
|
|
MG
|
B:MG1002
|
4.4
|
17.2
|
1.0
|
|
CG
|
B:ARG138
|
4.5
|
19.1
|
1.0
|
|
CA
|
B:GLY108
|
4.5
|
17.5
|
1.0
|
|
O4'
|
E:GDP1001
|
4.5
|
19.0
|
1.0
|
|
O
|
B:HOH2046
|
4.5
|
14.2
|
1.0
|
|
C2'
|
E:GDP1001
|
4.6
|
19.2
|
1.0
|
|
O3B
|
B:GDP1001
|
4.6
|
13.3
|
1.0
|
|
OD2
|
B:ASP135
|
4.7
|
22.1
|
1.0
|
|
CB
|
B:ARG138
|
4.7
|
20.2
|
1.0
|
|
CA
|
B:GLN107
|
4.7
|
17.9
|
1.0
|
|
O3A
|
B:GDP1001
|
4.8
|
14.1
|
1.0
|
|
C
|
B:GLN107
|
4.8
|
18.1
|
1.0
|
|
O1B
|
B:GDP1001
|
4.9
|
13.5
|
1.0
|
|
Fluorine binding site 7 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 7 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1007
b:19.9
occ:1.00
|
F3
|
B:ALF1007
|
0.0
|
19.9
|
1.0
|
|
AL
|
B:ALF1007
|
1.8
|
18.9
|
1.0
|
|
MG
|
B:MG1002
|
2.0
|
17.2
|
1.0
|
|
F4
|
B:ALF1007
|
2.5
|
20.4
|
1.0
|
|
F2
|
B:ALF1007
|
2.5
|
19.1
|
1.0
|
|
O2B
|
B:GDP1001
|
2.5
|
15.5
|
1.0
|
|
O
|
B:HOH2036
|
2.6
|
23.0
|
1.0
|
|
O
|
B:HOH2027
|
2.8
|
14.3
|
1.0
|
|
O
|
B:HOH2046
|
2.8
|
14.2
|
1.0
|
|
O
|
B:HOH2064
|
3.0
|
14.8
|
1.0
|
|
O3B
|
B:GDP1001
|
3.0
|
13.3
|
1.0
|
|
PB
|
B:GDP1001
|
3.3
|
14.2
|
1.0
|
|
CD
|
B:ARG138
|
3.3
|
19.8
|
1.0
|
|
OD2
|
B:ASP135
|
3.3
|
22.1
|
1.0
|
|
NH1
|
B:ARG138
|
3.4
|
20.7
|
1.0
|
|
F1
|
B:ALF1007
|
3.5
|
19.6
|
1.0
|
|
NE
|
B:ARG138
|
4.0
|
20.6
|
1.0
|
|
CZ
|
B:ARG138
|
4.0
|
21.6
|
1.0
|
|
OG1
|
B:THR112
|
4.0
|
16.8
|
1.0
|
|
O1B
|
B:GDP1001
|
4.4
|
13.5
|
1.0
|
|
O3A
|
B:GDP1001
|
4.4
|
14.1
|
1.0
|
|
CG
|
B:ASP135
|
4.5
|
23.1
|
1.0
|
|
CG
|
B:ARG138
|
4.6
|
19.1
|
1.0
|
|
CB
|
B:ARG138
|
4.7
|
20.2
|
1.0
|
|
O2A
|
B:GDP1001
|
4.7
|
13.1
|
1.0
|
|
O3'
|
E:GDP1001
|
4.7
|
17.8
|
1.0
|
|
N
|
B:GLY190
|
5.0
|
23.1
|
1.0
|
|
Fluorine binding site 8 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 8 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1007
b:20.4
occ:1.00
|
F4
|
B:ALF1007
|
0.0
|
20.4
|
1.0
|
|
AL
|
B:ALF1007
|
1.8
|
18.9
|
1.0
|
|
F3
|
B:ALF1007
|
2.5
|
19.9
|
1.0
|
|
F1
|
B:ALF1007
|
2.5
|
19.6
|
1.0
|
|
O
|
B:HOH2064
|
2.5
|
14.8
|
1.0
|
|
O2B
|
B:GDP1001
|
2.7
|
15.5
|
1.0
|
|
O
|
B:HOH2036
|
2.8
|
23.0
|
1.0
|
|
CE
|
B:LYS111
|
2.9
|
17.6
|
1.0
|
|
NZ
|
B:LYS111
|
2.9
|
19.5
|
1.0
|
|
PB
|
B:GDP1001
|
3.1
|
14.2
|
1.0
|
|
N
|
B:GLY190
|
3.1
|
23.1
|
1.0
|
|
MG
|
B:MG1002
|
3.1
|
17.2
|
1.0
|
|
O3B
|
B:GDP1001
|
3.1
|
13.3
|
1.0
|
|
O1B
|
B:GDP1001
|
3.2
|
13.5
|
1.0
|
|
F2
|
B:ALF1007
|
3.5
|
19.1
|
1.0
|
|
O
|
B:THR188
|
3.8
|
21.5
|
1.0
|
|
CA
|
B:GLY190
|
3.8
|
23.2
|
1.0
|
|
C
|
B:ALA189
|
3.9
|
22.8
|
1.0
|
|
CA
|
B:ALA189
|
4.0
|
22.4
|
1.0
|
|
OD2
|
B:ASP135
|
4.2
|
22.1
|
1.0
|
|
CD
|
B:LYS111
|
4.3
|
17.1
|
1.0
|
|
O
|
B:HOH2027
|
4.3
|
14.3
|
1.0
|
|
CB
|
B:LYS111
|
4.4
|
16.1
|
1.0
|
|
O3A
|
B:GDP1001
|
4.6
|
14.1
|
1.0
|
|
C
|
B:THR188
|
4.7
|
22.0
|
1.0
|
|
CG
|
B:LYS111
|
4.7
|
16.4
|
1.0
|
|
O
|
B:HOH2046
|
4.7
|
14.2
|
1.0
|
|
OD1
|
B:ASP187
|
4.8
|
27.7
|
1.0
|
|
OG1
|
B:THR112
|
4.8
|
16.8
|
1.0
|
|
N
|
B:ALA189
|
4.9
|
21.7
|
1.0
|
|
N
|
B:GLY108
|
4.9
|
17.8
|
1.0
|
|
O
|
B:LEU106
|
4.9
|
17.1
|
1.0
|
|
O
|
B:ALA189
|
4.9
|
23.1
|
1.0
|
|
Fluorine binding site 9 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 9 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1007
b:22.4
occ:1.00
|
F1
|
C:ALF1007
|
0.0
|
22.4
|
1.0
|
|
AL
|
C:ALF1007
|
1.8
|
18.8
|
1.0
|
|
F4
|
C:ALF1007
|
2.5
|
20.4
|
1.0
|
|
F2
|
C:ALF1007
|
2.5
|
19.5
|
1.0
|
|
O2B
|
C:GDP1001
|
2.6
|
16.5
|
1.0
|
|
O
|
C:HOH2054
|
2.6
|
24.1
|
1.0
|
|
N
|
C:GLY108
|
2.7
|
18.9
|
1.0
|
|
CA
|
C:GLN107
|
3.0
|
20.8
|
1.0
|
|
NZ
|
C:LYS111
|
3.3
|
15.7
|
1.0
|
|
C
|
C:GLN107
|
3.3
|
20.0
|
1.0
|
|
CA
|
C:GLY190
|
3.3
|
24.6
|
1.0
|
|
N
|
C:GLY190
|
3.3
|
24.6
|
1.0
|
|
F3
|
C:ALF1007
|
3.5
|
18.8
|
1.0
|
|
PB
|
C:GDP1001
|
3.8
|
14.8
|
1.0
|
|
CA
|
C:GLY108
|
3.8
|
17.8
|
1.0
|
|
O3'
|
F:GDP1001
|
3.8
|
18.1
|
1.0
|
|
O
|
C:LEU106
|
3.8
|
20.6
|
1.0
|
|
CB
|
C:GLN107
|
3.9
|
21.3
|
1.0
|
|
O1B
|
C:GDP1001
|
3.9
|
16.5
|
1.0
|
|
N
|
C:GLN107
|
3.9
|
20.5
|
1.0
|
|
O
|
F:HOH2064
|
4.0
|
14.0
|
1.0
|
|
CG
|
C:GLN107
|
4.2
|
23.1
|
1.0
|
|
C
|
C:LEU106
|
4.2
|
20.4
|
1.0
|
|
CE
|
C:LYS111
|
4.3
|
19.0
|
1.0
|
|
C
|
C:GLY190
|
4.3
|
24.8
|
1.0
|
|
O
|
C:GLY190
|
4.5
|
24.6
|
1.0
|
|
C4'
|
F:GDP1001
|
4.5
|
17.9
|
1.0
|
|
O
|
C:GLN107
|
4.6
|
19.4
|
1.0
|
|
O3B
|
C:GDP1001
|
4.6
|
15.5
|
1.0
|
|
C
|
C:ALA189
|
4.6
|
24.7
|
1.0
|
|
N
|
C:SER109
|
4.7
|
16.8
|
1.0
|
|
C3'
|
F:GDP1001
|
4.8
|
18.1
|
1.0
|
|
C
|
C:GLY108
|
4.8
|
17.5
|
1.0
|
|
O3A
|
C:GDP1001
|
4.9
|
17.0
|
1.0
|
|
NH1
|
C:ARG138
|
4.9
|
21.6
|
1.0
|
|
MG
|
C:MG1002
|
5.0
|
18.5
|
1.0
|
|
Fluorine binding site 10 out
of 24 in 2cnw
Go back to
Fluorine Binding Sites List in 2cnw
Fluorine binding site 10 out
of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1007
b:19.5
occ:1.00
|
F2
|
C:ALF1007
|
0.0
|
19.5
|
1.0
|
|
AL
|
C:ALF1007
|
1.8
|
18.8
|
1.0
|
|
O2B
|
C:GDP1001
|
2.5
|
16.5
|
1.0
|
|
F1
|
C:ALF1007
|
2.5
|
22.4
|
1.0
|
|
F3
|
C:ALF1007
|
2.5
|
18.8
|
1.0
|
|
O3'
|
F:GDP1001
|
2.6
|
18.1
|
1.0
|
|
O
|
C:HOH2054
|
2.6
|
24.1
|
1.0
|
|
NH1
|
C:ARG138
|
2.7
|
21.6
|
1.0
|
|
CD
|
C:ARG138
|
3.3
|
24.5
|
1.0
|
|
C3'
|
F:GDP1001
|
3.3
|
18.1
|
1.0
|
|
C4'
|
F:GDP1001
|
3.4
|
17.9
|
1.0
|
|
F4
|
C:ALF1007
|
3.6
|
20.4
|
1.0
|
|
CZ
|
C:ARG138
|
3.7
|
21.8
|
1.0
|
|
N
|
C:GLY108
|
3.7
|
18.9
|
1.0
|
|
NE
|
C:ARG138
|
3.9
|
23.8
|
1.0
|
|
PB
|
C:GDP1001
|
3.9
|
14.8
|
1.0
|
|
C5'
|
F:GDP1001
|
4.0
|
14.8
|
1.0
|
|
CA
|
C:GLY108
|
4.2
|
17.8
|
1.0
|
|
MG
|
C:MG1002
|
4.3
|
18.5
|
1.0
|
|
O
|
C:HOH2117
|
4.3
|
19.0
|
1.0
|
|
CG
|
C:ARG138
|
4.4
|
24.2
|
1.0
|
|
O
|
F:HOH2064
|
4.5
|
14.0
|
1.0
|
|
O3B
|
C:GDP1001
|
4.5
|
15.5
|
1.0
|
|
O3A
|
C:GDP1001
|
4.6
|
17.0
|
1.0
|
|
O4'
|
F:GDP1001
|
4.7
|
19.1
|
1.0
|
|
C
|
C:GLN107
|
4.7
|
20.0
|
1.0
|
|
CB
|
C:ARG138
|
4.7
|
24.2
|
1.0
|
|
OD2
|
C:ASP135
|
4.7
|
29.4
|
1.0
|
|
C2'
|
F:GDP1001
|
4.8
|
18.2
|
1.0
|
|
CA
|
C:GLN107
|
4.8
|
20.8
|
1.0
|
|
O1B
|
C:GDP1001
|
4.9
|
16.5
|
1.0
|
|
O
|
C:HOH2053
|
4.9
|
16.9
|
1.0
|
|
NH2
|
C:ARG138
|
4.9
|
19.4
|
1.0
|
|
Reference:
P.J.Focia,
J.Gawronski-Salerno,
J.S.Coon V,
D.M.Freymann.
Structure of A Gdp:Alf(4) Complex of the Srp Gtpases Ffh and Ftsy, and Identification of A Peripheral Nucleotide Interaction Site. J.Mol.Biol. V. 360 631 2006.
ISSN: ISSN 0022-2836
PubMed: 16780874
DOI: 10.1016/J.JMB.2006.05.031
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