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Fluorine in PDB 2cnw: GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy

Protein crystallography data

The structure of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2cnw was solved by P.J.Focia, J.Gawronski-Salerno, J.S.Coon V, D.M.Freymann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.68 / 2.39
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 188.686, 188.686, 44.588, 90.00, 90.00, 120.00
R / Rfree (%) 18.3 / 25.3

Other elements in 2cnw:

The structure of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms
Aluminium (Al) 6 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Fluorine atom in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy (pdb code 2cnw). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2cnw:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 24 in 2cnw

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Fluorine binding site 1 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1007

b:18.1
occ:1.00
F1 A:ALF1007 0.0 18.1 1.0
AL A:ALF1007 1.8 16.6 1.0
F2 A:ALF1007 2.5 17.8 1.0
F4 A:ALF1007 2.5 16.5 1.0
O A:HOH2048 2.6 11.1 1.0
O2B A:GDP1001 2.6 12.5 1.0
N A:GLY108 2.8 15.7 1.0
CA A:GLN107 3.1 16.4 1.0
N A:GLY190 3.3 19.4 1.0
CA A:GLY190 3.3 19.4 1.0
NZ A:LYS111 3.4 12.9 1.0
C A:GLN107 3.4 16.4 1.0
F3 A:ALF1007 3.5 13.6 1.0
O3' D:GDP1001 3.5 15.3 1.0
CB A:GLN107 3.8 16.5 1.0
O D:HOH2085 3.8 14.0 1.0
CA A:GLY108 3.9 14.9 1.0
PB A:GDP1001 3.9 10.6 1.0
O A:LEU106 4.0 14.7 1.0
CG A:GLN107 4.1 18.4 1.0
O1B A:GDP1001 4.1 8.9 1.0
N A:GLN107 4.2 15.6 1.0
CE A:LYS111 4.3 15.1 1.0
C4' D:GDP1001 4.3 16.1 1.0
C A:GLY190 4.3 19.8 1.0
C A:LEU106 4.5 14.8 1.0
C3' D:GDP1001 4.5 16.4 1.0
O A:GLY190 4.6 19.0 1.0
C A:ALA189 4.6 19.3 1.0
O A:GLN107 4.7 17.0 1.0
O3B A:GDP1001 4.7 9.5 1.0
NH1 A:ARG138 4.9 12.3 1.0
O A:HOH2085 4.9 13.7 1.0
N A:SER109 5.0 14.2 1.0
C A:GLY108 5.0 14.5 1.0

Fluorine binding site 2 out of 24 in 2cnw

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Fluorine binding site 2 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1007

b:17.8
occ:1.00
F2 A:ALF1007 0.0 17.8 1.0
AL A:ALF1007 1.8 16.6 1.0
F1 A:ALF1007 2.5 18.1 1.0
F3 A:ALF1007 2.5 13.6 1.0
O3' D:GDP1001 2.6 15.3 1.0
O2B A:GDP1001 2.6 12.5 1.0
O A:HOH2048 2.6 11.1 1.0
NH1 A:ARG138 2.7 12.3 1.0
C3' D:GDP1001 3.1 16.4 1.0
CD A:ARG138 3.2 18.6 1.0
C4' D:GDP1001 3.3 16.1 1.0
F4 A:ALF1007 3.6 16.5 1.0
CZ A:ARG138 3.7 16.5 1.0
NE A:ARG138 3.9 17.3 1.0
N A:GLY108 3.9 15.7 1.0
C5' D:GDP1001 3.9 15.0 1.0
PB A:GDP1001 4.1 10.6 1.0
CA A:GLY108 4.3 14.9 1.0
O D:HOH2085 4.3 14.0 1.0
MG A:MG1002 4.3 12.8 1.0
CG A:ARG138 4.3 19.8 1.0
O A:HOH2058 4.5 13.1 1.0
O4' D:GDP1001 4.6 15.6 1.0
C2' D:GDP1001 4.6 16.5 1.0
O3B A:GDP1001 4.6 9.5 1.0
O3A A:GDP1001 4.7 10.1 1.0
CB A:ARG138 4.7 19.2 1.0
OD2 A:ASP135 4.7 20.7 1.0
C A:GLN107 4.8 16.4 1.0
NH2 A:ARG138 4.9 15.5 1.0
CA A:GLN107 4.9 16.4 1.0

Fluorine binding site 3 out of 24 in 2cnw

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Fluorine binding site 3 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1007

b:13.6
occ:1.00
F3 A:ALF1007 0.0 13.6 1.0
AL A:ALF1007 1.8 16.6 1.0
MG A:MG1002 2.0 12.8 1.0
F4 A:ALF1007 2.5 16.5 1.0
F2 A:ALF1007 2.5 17.8 1.0
O2B A:GDP1001 2.6 12.5 1.0
O A:HOH2048 2.6 11.1 1.0
O A:HOH2038 2.7 10.9 1.0
O A:HOH2085 2.9 13.7 1.0
O A:HOH2058 2.9 13.1 1.0
O3B A:GDP1001 3.1 9.5 1.0
CD A:ARG138 3.2 18.6 1.0
OD2 A:ASP135 3.3 20.7 1.0
PB A:GDP1001 3.4 10.6 1.0
NH1 A:ARG138 3.4 12.3 1.0
F1 A:ALF1007 3.5 18.1 1.0
NE A:ARG138 3.9 17.3 1.0
CZ A:ARG138 4.0 16.5 1.0
OG1 A:THR112 4.0 14.9 1.0
CG A:ARG138 4.4 19.8 1.0
O3A A:GDP1001 4.5 10.1 1.0
CB A:ARG138 4.5 19.2 1.0
CG A:ASP135 4.5 22.5 1.0
O1B A:GDP1001 4.6 8.9 1.0
O2A A:GDP1001 4.7 8.7 1.0
O3' D:GDP1001 4.8 15.3 1.0
N A:GLY190 4.9 19.4 1.0

Fluorine binding site 4 out of 24 in 2cnw

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Fluorine binding site 4 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1007

b:16.5
occ:1.00
F4 A:ALF1007 0.0 16.5 1.0
AL A:ALF1007 1.8 16.6 1.0
O A:HOH2085 2.5 13.7 1.0
F3 A:ALF1007 2.5 13.6 1.0
F1 A:ALF1007 2.5 18.1 1.0
O2B A:GDP1001 2.6 12.5 1.0
O A:HOH2048 2.7 11.1 1.0
NZ A:LYS111 2.9 12.9 1.0
CE A:LYS111 2.9 15.1 1.0
N A:GLY190 3.0 19.4 1.0
PB A:GDP1001 3.2 10.6 1.0
MG A:MG1002 3.2 12.8 1.0
O3B A:GDP1001 3.2 9.5 1.0
O1B A:GDP1001 3.5 8.9 1.0
F2 A:ALF1007 3.6 17.8 1.0
O A:THR188 3.7 19.8 1.0
C A:ALA189 3.7 19.3 1.0
CA A:GLY190 3.8 19.4 1.0
CA A:ALA189 3.8 19.1 1.0
OD2 A:ASP135 4.2 20.7 1.0
CD A:LYS111 4.3 15.4 1.0
O A:HOH2038 4.4 10.9 1.0
C A:THR188 4.6 19.8 1.0
CB A:LYS111 4.6 15.7 1.0
N A:GLY108 4.7 15.7 1.0
N A:ALA189 4.7 19.3 1.0
O A:ALA189 4.7 20.0 1.0
O3A A:GDP1001 4.7 10.1 1.0
OD1 A:ASP187 4.8 24.2 1.0
CG A:LYS111 4.8 16.3 1.0
OG1 A:THR112 4.9 14.9 1.0
CB A:ALA189 4.9 18.2 1.0
O D:HOH2085 4.9 14.0 1.0
O A:HOH2058 4.9 13.1 1.0

Fluorine binding site 5 out of 24 in 2cnw

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Fluorine binding site 5 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1007

b:19.6
occ:1.00
F1 B:ALF1007 0.0 19.6 1.0
AL B:ALF1007 1.8 18.9 1.0
F2 B:ALF1007 2.5 19.1 1.0
F4 B:ALF1007 2.5 20.4 1.0
O B:HOH2036 2.6 23.0 1.0
O2B B:GDP1001 2.7 15.5 1.0
N B:GLY108 3.0 17.8 1.0
CA B:GLN107 3.0 17.9 1.0
CA B:GLY190 3.3 23.2 1.0
NZ B:LYS111 3.3 19.5 1.0
N B:GLY190 3.3 23.1 1.0
C B:GLN107 3.5 18.1 1.0
F3 B:ALF1007 3.5 19.9 1.0
O B:LEU106 3.7 17.1 1.0
O3' E:GDP1001 3.8 17.8 1.0
PB B:GDP1001 3.9 14.2 1.0
N B:GLN107 3.9 17.7 1.0
CB B:GLN107 3.9 18.0 1.0
O1B B:GDP1001 4.0 13.5 1.0
O E:HOH2089 4.1 19.9 1.0
CE B:LYS111 4.1 17.6 1.0
CG B:GLN107 4.1 18.2 1.0
CA B:GLY108 4.1 17.5 1.0
C B:LEU106 4.2 17.8 1.0
C B:GLY190 4.2 23.6 1.0
O B:GLY190 4.4 23.4 1.0
C4' E:GDP1001 4.5 18.4 1.0
C B:ALA189 4.6 22.8 1.0
O B:GLN107 4.7 18.5 1.0
O3B B:GDP1001 4.7 13.3 1.0
C3' E:GDP1001 4.8 18.4 1.0
N B:SER109 4.9 16.7 1.0

Fluorine binding site 6 out of 24 in 2cnw

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Fluorine binding site 6 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1007

b:19.1
occ:1.00
F2 B:ALF1007 0.0 19.1 1.0
AL B:ALF1007 1.8 18.9 1.0
O3' E:GDP1001 2.4 17.8 1.0
O B:HOH2036 2.5 23.0 1.0
F3 B:ALF1007 2.5 19.9 1.0
F1 B:ALF1007 2.5 19.6 1.0
O2B B:GDP1001 2.5 15.5 1.0
NH1 B:ARG138 2.8 20.7 1.0
C3' E:GDP1001 3.2 18.4 1.0
CD B:ARG138 3.3 19.8 1.0
C4' E:GDP1001 3.3 18.4 1.0
F4 B:ALF1007 3.5 20.4 1.0
CZ B:ARG138 3.8 21.6 1.0
N B:GLY108 3.9 17.8 1.0
NE B:ARG138 4.0 20.6 1.0
PB B:GDP1001 4.0 14.2 1.0
C5' E:GDP1001 4.1 16.6 1.0
O E:HOH2089 4.3 19.9 1.0
MG B:MG1002 4.4 17.2 1.0
CG B:ARG138 4.5 19.1 1.0
CA B:GLY108 4.5 17.5 1.0
O4' E:GDP1001 4.5 19.0 1.0
O B:HOH2046 4.5 14.2 1.0
C2' E:GDP1001 4.6 19.2 1.0
O3B B:GDP1001 4.6 13.3 1.0
OD2 B:ASP135 4.7 22.1 1.0
CB B:ARG138 4.7 20.2 1.0
CA B:GLN107 4.7 17.9 1.0
O3A B:GDP1001 4.8 14.1 1.0
C B:GLN107 4.8 18.1 1.0
O1B B:GDP1001 4.9 13.5 1.0

Fluorine binding site 7 out of 24 in 2cnw

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Fluorine binding site 7 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1007

b:19.9
occ:1.00
F3 B:ALF1007 0.0 19.9 1.0
AL B:ALF1007 1.8 18.9 1.0
MG B:MG1002 2.0 17.2 1.0
F4 B:ALF1007 2.5 20.4 1.0
F2 B:ALF1007 2.5 19.1 1.0
O2B B:GDP1001 2.5 15.5 1.0
O B:HOH2036 2.6 23.0 1.0
O B:HOH2027 2.8 14.3 1.0
O B:HOH2046 2.8 14.2 1.0
O B:HOH2064 3.0 14.8 1.0
O3B B:GDP1001 3.0 13.3 1.0
PB B:GDP1001 3.3 14.2 1.0
CD B:ARG138 3.3 19.8 1.0
OD2 B:ASP135 3.3 22.1 1.0
NH1 B:ARG138 3.4 20.7 1.0
F1 B:ALF1007 3.5 19.6 1.0
NE B:ARG138 4.0 20.6 1.0
CZ B:ARG138 4.0 21.6 1.0
OG1 B:THR112 4.0 16.8 1.0
O1B B:GDP1001 4.4 13.5 1.0
O3A B:GDP1001 4.4 14.1 1.0
CG B:ASP135 4.5 23.1 1.0
CG B:ARG138 4.6 19.1 1.0
CB B:ARG138 4.7 20.2 1.0
O2A B:GDP1001 4.7 13.1 1.0
O3' E:GDP1001 4.7 17.8 1.0
N B:GLY190 5.0 23.1 1.0

Fluorine binding site 8 out of 24 in 2cnw

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Fluorine binding site 8 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1007

b:20.4
occ:1.00
F4 B:ALF1007 0.0 20.4 1.0
AL B:ALF1007 1.8 18.9 1.0
F3 B:ALF1007 2.5 19.9 1.0
F1 B:ALF1007 2.5 19.6 1.0
O B:HOH2064 2.5 14.8 1.0
O2B B:GDP1001 2.7 15.5 1.0
O B:HOH2036 2.8 23.0 1.0
CE B:LYS111 2.9 17.6 1.0
NZ B:LYS111 2.9 19.5 1.0
PB B:GDP1001 3.1 14.2 1.0
N B:GLY190 3.1 23.1 1.0
MG B:MG1002 3.1 17.2 1.0
O3B B:GDP1001 3.1 13.3 1.0
O1B B:GDP1001 3.2 13.5 1.0
F2 B:ALF1007 3.5 19.1 1.0
O B:THR188 3.8 21.5 1.0
CA B:GLY190 3.8 23.2 1.0
C B:ALA189 3.9 22.8 1.0
CA B:ALA189 4.0 22.4 1.0
OD2 B:ASP135 4.2 22.1 1.0
CD B:LYS111 4.3 17.1 1.0
O B:HOH2027 4.3 14.3 1.0
CB B:LYS111 4.4 16.1 1.0
O3A B:GDP1001 4.6 14.1 1.0
C B:THR188 4.7 22.0 1.0
CG B:LYS111 4.7 16.4 1.0
O B:HOH2046 4.7 14.2 1.0
OD1 B:ASP187 4.8 27.7 1.0
OG1 B:THR112 4.8 16.8 1.0
N B:ALA189 4.9 21.7 1.0
N B:GLY108 4.9 17.8 1.0
O B:LEU106 4.9 17.1 1.0
O B:ALA189 4.9 23.1 1.0

Fluorine binding site 9 out of 24 in 2cnw

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Fluorine binding site 9 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1007

b:22.4
occ:1.00
F1 C:ALF1007 0.0 22.4 1.0
AL C:ALF1007 1.8 18.8 1.0
F4 C:ALF1007 2.5 20.4 1.0
F2 C:ALF1007 2.5 19.5 1.0
O2B C:GDP1001 2.6 16.5 1.0
O C:HOH2054 2.6 24.1 1.0
N C:GLY108 2.7 18.9 1.0
CA C:GLN107 3.0 20.8 1.0
NZ C:LYS111 3.3 15.7 1.0
C C:GLN107 3.3 20.0 1.0
CA C:GLY190 3.3 24.6 1.0
N C:GLY190 3.3 24.6 1.0
F3 C:ALF1007 3.5 18.8 1.0
PB C:GDP1001 3.8 14.8 1.0
CA C:GLY108 3.8 17.8 1.0
O3' F:GDP1001 3.8 18.1 1.0
O C:LEU106 3.8 20.6 1.0
CB C:GLN107 3.9 21.3 1.0
O1B C:GDP1001 3.9 16.5 1.0
N C:GLN107 3.9 20.5 1.0
O F:HOH2064 4.0 14.0 1.0
CG C:GLN107 4.2 23.1 1.0
C C:LEU106 4.2 20.4 1.0
CE C:LYS111 4.3 19.0 1.0
C C:GLY190 4.3 24.8 1.0
O C:GLY190 4.5 24.6 1.0
C4' F:GDP1001 4.5 17.9 1.0
O C:GLN107 4.6 19.4 1.0
O3B C:GDP1001 4.6 15.5 1.0
C C:ALA189 4.6 24.7 1.0
N C:SER109 4.7 16.8 1.0
C3' F:GDP1001 4.8 18.1 1.0
C C:GLY108 4.8 17.5 1.0
O3A C:GDP1001 4.9 17.0 1.0
NH1 C:ARG138 4.9 21.6 1.0
MG C:MG1002 5.0 18.5 1.0

Fluorine binding site 10 out of 24 in 2cnw

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Fluorine binding site 10 out of 24 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1007

b:19.5
occ:1.00
F2 C:ALF1007 0.0 19.5 1.0
AL C:ALF1007 1.8 18.8 1.0
O2B C:GDP1001 2.5 16.5 1.0
F1 C:ALF1007 2.5 22.4 1.0
F3 C:ALF1007 2.5 18.8 1.0
O3' F:GDP1001 2.6 18.1 1.0
O C:HOH2054 2.6 24.1 1.0
NH1 C:ARG138 2.7 21.6 1.0
CD C:ARG138 3.3 24.5 1.0
C3' F:GDP1001 3.3 18.1 1.0
C4' F:GDP1001 3.4 17.9 1.0
F4 C:ALF1007 3.6 20.4 1.0
CZ C:ARG138 3.7 21.8 1.0
N C:GLY108 3.7 18.9 1.0
NE C:ARG138 3.9 23.8 1.0
PB C:GDP1001 3.9 14.8 1.0
C5' F:GDP1001 4.0 14.8 1.0
CA C:GLY108 4.2 17.8 1.0
MG C:MG1002 4.3 18.5 1.0
O C:HOH2117 4.3 19.0 1.0
CG C:ARG138 4.4 24.2 1.0
O F:HOH2064 4.5 14.0 1.0
O3B C:GDP1001 4.5 15.5 1.0
O3A C:GDP1001 4.6 17.0 1.0
O4' F:GDP1001 4.7 19.1 1.0
C C:GLN107 4.7 20.0 1.0
CB C:ARG138 4.7 24.2 1.0
OD2 C:ASP135 4.7 29.4 1.0
C2' F:GDP1001 4.8 18.2 1.0
CA C:GLN107 4.8 20.8 1.0
O1B C:GDP1001 4.9 16.5 1.0
O C:HOH2053 4.9 16.9 1.0
NH2 C:ARG138 4.9 19.4 1.0

Reference:

P.J.Focia, J.Gawronski-Salerno, J.S.Coon V, D.M.Freymann. Structure of A Gdp:Alf(4) Complex of the Srp Gtpases Ffh and Ftsy, and Identification of A Peripheral Nucleotide Interaction Site. J.Mol.Biol. V. 360 631 2006.
ISSN: ISSN 0022-2836
PubMed: 16780874
DOI: 10.1016/J.JMB.2006.05.031
Page generated: Mon Jul 14 12:48:47 2025

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