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Fluorine in PDB 2i16: Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K

Enzymatic activity of Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K

All present enzymatic activity of Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K:
1.1.1.21;

Protein crystallography data

The structure of Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K, PDB code: 2i16 was solved by T.Petrova, S.Ginell, A.Mitshler, I.Hasemann, T.Schneider, A.Cousido, V.Y.Lunin, A.Joachimiak, A.Podjarny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 0.81
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.173, 66.671, 47.297, 90.00, 92.26, 90.00
R / Rfree (%) 8.6 / 9.7

Other elements in 2i16:

The structure of Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K also contains other interesting chemical elements:

Bromine (Br) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K (pdb code 2i16). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K, PDB code: 2i16:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 2i16

Go back to Fluorine Binding Sites List in 2i16
Fluorine binding site 1 out of 2 in the Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F321

b:3.2
occ:1.00
F9 A:LDT321 0.0 3.2 1.0
C5 A:LDT321 1.4 2.7 1.0
C2 A:LDT321 2.3 2.5 1.0
C6 A:LDT321 2.3 2.9 1.0
O A:VAL48 3.0 2.1 1.0
O A:HOH485 3.3 6.3 1.0
O A:HOH484 3.5 3.8 1.0
C A:VAL48 3.5 1.7 1.0
CD1 A:TYR49 3.6 1.9 1.0
O A:HOH965 3.6 6.6 0.5
CG1 A:VAL48 3.6 1.9 1.0
C3 A:LDT321 3.6 2.8 1.0
C4 A:LDT321 3.6 2.3 1.0
O A:HOH972 3.8 5.8 0.7
CG2 A:VAL48 3.9 2.1 1.0
CA A:TYR49 3.9 1.9 1.0
N A:TYR49 3.9 1.7 1.0
NE1 A:TRP21 4.0 2.9 1.0
CD1 A:TRP21 4.0 2.6 1.0
C7 A:LDT321 4.1 2.6 1.0
CB A:VAL48 4.1 1.7 1.0
CE1 A:TYR49 4.2 1.8 1.0
CA A:VAL48 4.5 1.8 1.0
CG A:TYR49 4.6 1.8 1.0
O A:HOH606 4.7 4.8 1.0
O15 A:LDT321 4.7 2.6 1.0
CB A:TYR49 4.8 1.9 1.0
O A:HOH477 4.8 5.2 1.0
C A:TYR49 4.8 2.0 1.0

Fluorine binding site 2 out of 2 in 2i16

Go back to Fluorine Binding Sites List in 2i16
Fluorine binding site 2 out of 2 in the Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Aldose Reductase in Complex with Nadp+ and the Inhibitor IDD594 at Temperature of 15K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F321

b:3.5
occ:1.00
F14 A:LDT321 0.0 3.5 1.0
C27 A:LDT321 1.4 2.9 1.0
C24 A:LDT321 2.4 2.9 1.0
C28 A:LDT321 2.4 3.1 1.0
C13 A:LDT321 2.8 3.3 1.0
C A:ALA300 3.0 4.4 1.0
CA A:ALA300 3.0 4.4 1.0
CH2 A:TRP112 3.2 3.2 1.0
N A:ALA300 3.2 3.9 1.0
N A:LEU301 3.3 4.1 1.0
O A:ALA300 3.5 4.8 1.0
CB A:LEU301 3.5 4.1 1.0
C A:CYS299 3.6 4.0 0.5
C25 A:LDT321 3.6 2.8 1.0
C26 A:LDT321 3.6 2.8 1.0
CZ2 A:TRP112 3.6 3.3 1.0
C A:CYS299 3.7 2.6 0.5
O A:CYS299 3.7 4.2 0.5
CZ3 A:TRP112 3.7 2.9 1.0
O A:CYS299 4.0 4.7 0.5
CA A:LEU301 4.0 3.9 1.0
C29 A:LDT321 4.1 2.8 1.0
N17 A:LDT321 4.2 2.9 1.0
CA A:CYS299 4.3 3.7 0.5
CB A:CYS299 4.4 3.6 0.5
CE2 A:TRP112 4.4 2.8 1.0
OH A:TYR310 4.4 5.0 1.0
SG A:CYS299 4.5 2.9 0.5
CB A:ALA300 4.5 5.8 1.0
CE3 A:TRP112 4.5 2.5 1.0
CE2 A:PHE312 4.7 3.7 0.5
CE2 A:PHE312 4.7 4.8 0.5
CA A:CYS299 4.7 2.8 0.5
CE1 A:TYR310 4.8 4.3 1.0
CD2 A:TRP112 4.9 2.5 1.0
CG A:LEU301 4.9 4.6 1.0

Reference:

T.Petrova, S.Ginell, A.Mitschler, I.Hazemann, T.Schneider, A.Cousido, V.Y.Lunin, A.Joachimiak, A.Podjarny. Ultrahigh-Resolution Study of Protein Atomic Displacement Parameters at Cryotemperatures Obtained with A Helium Cryostat. Acta Crystallogr.,Sect.D V. 62 1535 2006.
ISSN: ISSN 0907-4449
PubMed: 17139089
DOI: 10.1107/S0907444906041035
Page generated: Mon Jul 14 13:26:02 2025

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