Atomistry » Fluorine » PDB 2q9p-2rbe » 2r2m
Atomistry »
  Fluorine »
    PDB 2q9p-2rbe »
      2r2m »

Fluorine in PDB 2r2m: 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors

Enzymatic activity of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors

All present enzymatic activity of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors:
3.4.21.5;

Protein crystallography data

The structure of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors, PDB code: 2r2m was solved by J.Spurlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.950, 72.135, 72.850, 90.00, 100.64, 90.00
R / Rfree (%) 16.8 / 21.4

Other elements in 2r2m:

The structure of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors (pdb code 2r2m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors, PDB code: 2r2m:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 2r2m

Go back to Fluorine Binding Sites List in 2r2m
Fluorine binding site 1 out of 3 in the 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F5000

b:24.5
occ:1.00
F19 B:I505000 0.0 24.5 1.0
C13 B:I505000 1.4 21.6 1.0
C14 B:I505000 2.4 23.0 1.0
C12 B:I505000 2.4 24.2 1.0
C9 B:I505000 2.7 25.1 1.0
N20 B:I505000 2.8 26.9 1.0
O10 B:I505000 2.9 26.6 1.0
O B:GLY258 2.9 29.3 1.0
C11 B:I505000 2.9 25.8 1.0
N B:GLY258 3.2 21.3 1.0
O B:HOH5099 3.2 26.3 1.0
CB B:TRP257 3.4 18.7 1.0
N8 B:I505000 3.4 26.6 1.0
CA B:TRP257 3.5 22.5 1.0
C15 B:I505000 3.7 27.5 1.0
C17 B:I505000 3.7 29.2 1.0
C B:GLY258 3.8 24.0 1.0
C B:TRP257 3.9 21.9 1.0
CA B:GLY258 4.1 26.5 1.0
C7 B:I505000 4.1 20.6 1.0
C16 B:I505000 4.2 27.8 1.0
N4 B:I505000 4.3 20.5 1.0
C21 B:I505000 4.3 27.6 1.0
O B:HOH5105 4.4 34.0 1.0
O5 B:I505000 4.6 19.9 1.0
O B:SER256 4.6 21.6 1.0
CG B:TRP257 4.7 20.2 1.0
F31 B:I505000 4.9 29.5 1.0
N B:TRP257 4.9 20.6 1.0
C30 B:I505000 4.9 24.9 1.0
C6 B:I505000 5.0 23.2 1.0

Fluorine binding site 2 out of 3 in 2r2m

Go back to Fluorine Binding Sites List in 2r2m
Fluorine binding site 2 out of 3 in the 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F5000

b:29.5
occ:1.00
F31 B:I505000 0.0 29.5 1.0
C24 B:I505000 1.4 29.6 1.0
F32 B:I505000 2.2 32.5 1.0
C21 B:I505000 2.4 27.6 1.0
C25 B:I505000 2.4 27.8 1.0
N20 B:I505000 2.7 26.9 1.0
C30 B:I505000 2.7 24.9 1.0
CG B:GLU259 3.2 36.1 1.0
CE3 B:TRP257 3.5 24.0 1.0
O B:GLY258 3.6 29.3 1.0
C26 B:I505000 3.7 28.6 1.0
CZ3 B:TRP257 3.7 27.4 1.0
C14 B:I505000 3.9 23.0 1.0
C B:GLY258 4.0 24.0 1.0
CD B:GLU259 4.0 38.6 1.0
CG1 B:ILE209 4.1 25.3 1.0
C29 B:I505000 4.1 28.1 1.0
CB B:GLU259 4.3 34.1 1.0
N B:GLU259 4.4 29.6 1.0
CA B:GLU259 4.4 30.5 1.0
CD1 B:ILE209 4.5 28.9 1.0
C15 B:I505000 4.5 27.5 1.0
OE1 B:GLU259 4.6 34.6 1.0
CD2 B:TRP257 4.6 23.1 1.0
OE2 B:GLU259 4.6 45.5 1.0
CA B:GLY258 4.8 26.5 1.0
C27 B:I505000 4.8 28.1 1.0
C13 B:I505000 4.8 21.6 1.0
F19 B:I505000 4.9 24.5 1.0
CH2 B:TRP257 4.9 24.3 1.0
C28 B:I505000 5.0 28.7 1.0

Fluorine binding site 3 out of 3 in 2r2m

Go back to Fluorine Binding Sites List in 2r2m
Fluorine binding site 3 out of 3 in the 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F5000

b:32.5
occ:1.00
F32 B:I505000 0.0 32.5 1.0
C24 B:I505000 1.4 29.6 1.0
F31 B:I505000 2.2 29.5 1.0
C21 B:I505000 2.3 27.6 1.0
C25 B:I505000 2.4 27.8 1.0
C26 B:I505000 2.9 28.6 1.0
N20 B:I505000 3.6 26.9 1.0
C30 B:I505000 3.6 24.9 1.0
CD1 B:ILE209 3.9 28.9 1.0
CG1 B:ILE209 4.3 25.3 1.0
C27 B:I505000 4.3 28.1 1.0
CG B:GLU259 4.3 36.1 1.0
C14 B:I505000 4.6 23.0 1.0
C15 B:I505000 4.7 27.5 1.0
OE1 B:GLU259 4.7 34.6 1.0
CD B:GLU259 4.8 38.6 1.0
C29 B:I505000 4.8 28.1 1.0

Reference:

L.Lee, K.D.Kreutter, W.Pan, C.Crysler, J.Spurlino, M.R.Player, B.Tomczuk, T.Lu. 2-(2-Chloro-6-Fluorophenyl)Acetamides As Potent Thrombin Inhibitors Bioorg.Med.Chem.Lett. V. 17 6266 2007.
ISSN: ISSN 0960-894X
PubMed: 17889527
DOI: 10.1016/J.BMCL.2007.09.013
Page generated: Wed Jul 31 15:55:27 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy