Atomistry » Fluorine » PDB 2rfn-2vfz » 2skc
Atomistry »
  Fluorine »
    PDB 2rfn-2vfz »
      2skc »

Fluorine in PDB 2skc: Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate

Enzymatic activity of Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate

All present enzymatic activity of Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate:
2.4.1.1;

Protein crystallography data

The structure of Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate, PDB code: 2skc was solved by N.G.Oikonomakos, S.E.Zographos, K.E.Tsitsanou, L.N.Johnson, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.84 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 128.500, 128.500, 116.300, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 21.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate (pdb code 2skc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate, PDB code: 2skc:

Fluorine binding site 1 out of 1 in 2skc

Go back to Fluorine Binding Sites List in 2skc
Fluorine binding site 1 out of 1 in the Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pyridoxal Phosphorylase B in Complex with Fluorophosphate, Glucose and Inosine-5'-Monophosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F997

b:22.2
occ:1.00
 F A:FPO997 0.0 22.2 1.0
P A:FPO997 1.6 21.9 1.0
O2 A:FPO997 2.4 24.4 1.0
O3 A:FPO997 2.4 28.8 1.0
O A:HOH1161 2.4 6.3 1.0
O1 A:FPO997 2.4 23.8 1.0
O4P A:PLP999 3.1 12.6 1.0
C5A A:PLP999 3.2 9.2 1.0
CA A:GLY675 3.6 11.4 1.0
N A:THR676 3.6 10.3 1.0
O A:HOH1081 4.0 7.5 1.0
C A:GLY675 4.1 9.6 1.0
OG1 A:THR676 4.1 6.3 1.0
O4 A:GLC998 4.2 6.1 1.0
NZ A:LYS574 4.2 22.3 1.0
C3 A:GLC998 4.2 8.7 1.0
O A:HOH1093 4.3 26.6 1.0
O A:HOH1075 4.3 16.3 1.0
CA A:GLY135 4.4 14.4 1.0
N A:GLY677 4.4 7.8 1.0
N A:GLY675 4.6 13.2 1.0
O3 A:GLC998 4.6 9.1 1.0
C4 A:GLC998 4.7 10.4 1.0
C5 A:PLP999 4.7 5.9 1.0
CA A:THR676 4.7 6.5 1.0
OE1 A:GLU672 4.7 11.2 1.0
N A:GLY135 4.8 12.6 1.0
CD A:GLU672 4.9 11.2 1.0
O1 A:GLC998 4.9 16.1 1.0
OE2 A:GLU672 4.9 8.1 1.0

Reference:

N.G.Oikonomakos, S.E.Zographos, K.E.Tsitsanou, L.N.Johnson, K.R.Acharya. Activator Anion Binding Site in Pyridoxal Phosphorylase B: the Binding of Phosphite, Phosphate, and Fluorophosphate in the Crystal. Protein Sci. V. 5 2416 1996.
ISSN: ISSN 0961-8368
PubMed: 8976550
Page generated: Wed Jul 31 16:00:35 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy