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Fluorine in PDB 3l7b: Crystal Structure of Glycogen Phosphorylase DK3 Complex

Enzymatic activity of Crystal Structure of Glycogen Phosphorylase DK3 Complex

All present enzymatic activity of Crystal Structure of Glycogen Phosphorylase DK3 Complex:
2.4.1.1;

Protein crystallography data

The structure of Crystal Structure of Glycogen Phosphorylase DK3 Complex, PDB code: 3l7b was solved by V.G.Tsirkone, C.Lamprakis, J.M.Hayes, V.Skamnaki, C.Drakou, S.E.Zographos, D.D.Leonidas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.71 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 129.113, 129.113, 116.956, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 21.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Glycogen Phosphorylase DK3 Complex (pdb code 3l7b). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Glycogen Phosphorylase DK3 Complex, PDB code: 3l7b:

Fluorine binding site 1 out of 1 in 3l7b

Go back to Fluorine Binding Sites List in 3l7b
Fluorine binding site 1 out of 1 in the Crystal Structure of Glycogen Phosphorylase DK3 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Glycogen Phosphorylase DK3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F843

b:26.6
occ:1.00
F3 A:DKZ843 0.0 26.6 1.0
C3 A:DKZ843 1.4 27.4 1.0
C4 A:DKZ843 2.4 26.2 1.0
C2 A:DKZ843 2.4 28.9 1.0
O4 A:DKZ843 2.9 26.3 1.0
N A:SER674 2.9 23.0 1.0
O2 A:DKZ843 2.9 29.6 1.0
N A:GLY675 3.1 21.9 1.0
OE1 A:GLU672 3.2 27.5 1.0
N A:ALA673 3.3 24.1 1.0
CG A:GLU672 3.6 26.2 1.0
O A:HOH1085 3.6 35.0 1.0
C1 A:DKZ843 3.7 28.8 1.0
C5 A:DKZ843 3.8 25.9 1.0
CB A:ALA673 3.8 23.3 1.0
CA A:ALA673 3.8 23.6 1.0
CD A:GLU672 3.8 26.7 1.0
CA A:SER674 3.8 22.9 1.0
C A:ALA673 3.8 23.9 1.0
C A:SER674 3.8 22.7 1.0
C A:GLU672 3.9 24.9 1.0
CA A:GLY675 4.0 22.4 1.0
O5 A:DKZ843 4.1 24.3 1.0
CB A:SER674 4.2 22.6 1.0
CA A:GLU672 4.4 25.1 1.0
O A:HIS377 4.5 24.9 1.0
O A:HOH961 4.6 23.2 1.0
O A:GLU672 4.6 25.5 1.0
CB A:GLU672 4.6 25.1 1.0
O6 A:DKZ843 4.9 24.5 1.0
C6 A:DKZ843 4.9 24.0 1.0
O A:SER674 4.9 23.4 1.0
N1 A:DKZ843 5.0 29.2 1.0
OE2 A:GLU672 5.0 28.3 1.0

Reference:

V.G.Tsirkone, E.Tsoukala, C.Lamprakis, S.Manta, J.M.Hayes, V.T.Skamnaki, C.Drakou, S.E.Zographos, D.Komiotis, D.D.Leonidas. 1-(3-Deoxy-3-Fluoro-Beta-D-Glucopyranosyl) Pyrimidine Derivatives As Inhibitors of Glycogen Phosphorylase B: Kinetic, Crystallographic and Modelling Studies. Bioorg.Med.Chem. V. 18 3413 2010.
ISSN: ISSN 0968-0896
PubMed: 20430629
DOI: 10.1016/J.BMC.2010.04.004
Page generated: Mon Jul 14 17:42:22 2025

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