Atomistry » Fluorine » PDB 3n2m-3nly » 3nai
Atomistry »
  Fluorine »
    PDB 3n2m-3nly »
      3nai »

Fluorine in PDB 3nai: Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase

Protein crystallography data

The structure of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase, PDB code: 3nai was solved by K.H.Kim, J.H.Lee, I.Alam, Y.Park, S.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.53 / 2.56
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.246, 196.562, 109.598, 90.00, 114.81, 90.00
R / Rfree (%) 20.3 / 26.8

Other elements in 3nai:

The structure of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Manganese (Mn) 6 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase (pdb code 3nai). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase, PDB code: 3nai:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 3nai

Go back to Fluorine Binding Sites List in 3nai
Fluorine binding site 1 out of 3 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F521

b:71.1
occ:1.00
F5 A:URF521 0.0 71.1 1.0
C5 A:URF521 1.3 71.7 1.0
C6 A:URF521 2.4 71.6 1.0
C4 A:URF521 2.5 71.6 1.0
O4 A:URF521 2.8 72.2 1.0
NH2 A:ARG395 3.3 48.6 1.0
NH2 A:ARG185 3.6 38.8 1.0
N1 A:URF521 3.6 71.1 1.0
N3 A:URF521 3.6 70.7 1.0
NH1 A:ARG185 3.7 40.2 1.0
CZ A:ARG185 4.1 38.7 1.0
C2 A:URF521 4.1 70.7 1.0
O A:HOH649 4.3 30.5 1.0
CZ A:ARG395 4.3 48.2 1.0
NE A:ARG395 4.4 46.3 1.0
O A:HOH529 4.5 29.6 1.0
O A:HOH559 4.8 31.9 1.0
O A:HOH647 5.0 35.4 1.0

Fluorine binding site 2 out of 3 in 3nai

Go back to Fluorine Binding Sites List in 3nai
Fluorine binding site 2 out of 3 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F521

b:58.1
occ:0.80
F5 B:URF521 0.0 58.1 0.8
C5 B:URF521 1.3 57.8 0.8
C6 B:URF521 2.4 57.5 0.8
C4 B:URF521 2.5 57.2 0.8
O4 B:URF521 2.9 56.3 0.8
O B:HOH576 2.9 31.4 1.0
NH2 B:ARG185 3.0 44.3 1.0
N1 B:URF521 3.6 56.5 0.8
CZ B:ARG185 3.6 43.7 1.0
N3 B:URF521 3.7 57.0 0.8
NH1 B:ARG185 4.1 44.4 1.0
C2 B:URF521 4.1 56.6 0.8
NE B:ARG185 4.4 41.6 1.0
O B:HOH635 4.9 45.2 1.0
OD1 B:ASP346 4.9 27.3 1.0

Fluorine binding site 3 out of 3 in 3nai

Go back to Fluorine Binding Sites List in 3nai
Fluorine binding site 3 out of 3 in the Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structures and Functional Analysis of Murine Norovirus Rna- Dependent Rna Polymerase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F521

b:72.3
occ:1.00
F5 C:URF521 0.0 72.3 1.0
C5 C:URF521 1.3 72.5 1.0
C6 C:URF521 2.4 72.6 1.0
C4 C:URF521 2.5 72.1 1.0
O4 C:URF521 2.9 72.0 1.0
NH2 C:ARG395 3.2 51.4 1.0
NH1 C:ARG185 3.3 41.0 1.0
N1 C:URF521 3.6 72.7 1.0
N3 C:URF521 3.7 71.5 1.0
NH2 C:ARG185 3.8 39.8 1.0
CZ C:ARG185 3.9 40.2 1.0
C2 C:URF521 4.1 71.8 1.0
CZ C:ARG395 4.3 51.3 1.0
O C:HOH634 4.6 26.5 1.0
O C:HOH638 4.7 47.5 1.0
NE C:ARG395 5.0 49.3 1.0

Reference:

K.H.Kim, J.H.Lee, I.Alam, Y.Park, S.Kang. Crystal Structures and Functional Analysis of Murine Norovirus Rna-Dependent Rna Polymerase To Be Published.
Page generated: Wed Jul 31 20:51:54 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy