Atomistry » Fluorine » PDB 3rjc-3s9y » 3rwp
Atomistry »
  Fluorine »
    PDB 3rjc-3s9y »
      3rwp »

Fluorine in PDB 3rwp: Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1)

Enzymatic activity of Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1)

All present enzymatic activity of Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1):
2.7.11.1;

Protein crystallography data

The structure of Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1), PDB code: 3rwp was solved by S.E.Greasley, M.Hickey, R.-A.Ferre, M.Krauss, C.Cronin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.92
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.982, 122.982, 47.505, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 21.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1) (pdb code 3rwp). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1), PDB code: 3rwp:

Fluorine binding site 1 out of 1 in 3rwp

Go back to Fluorine Binding Sites List in 3rwp
Fluorine binding site 1 out of 1 in the Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Discovery of A Novel, Potent and Selective Inhibitor of 3- Phosphoinositide Dependent Kinase (PDK1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F360

b:27.6
occ:1.00
F34 A:ABQ360 0.0 27.6 1.0
C12 A:ABQ360 1.3 23.3 1.0
C3 A:ABQ360 2.3 20.5 1.0
C4 A:ABQ360 2.4 18.4 1.0
O A:GLY89 3.0 15.6 1.0
N A:VAL96 3.1 13.3 1.0
CG2 A:VAL96 3.3 12.6 1.0
N A:GLY91 3.3 20.6 1.0
C A:GLY89 3.4 16.4 1.0
CA A:THR95 3.5 14.4 1.0
N A:GLU90 3.5 17.8 1.0
O A:SER94 3.5 17.0 1.0
C A:GLU90 3.6 21.9 1.0
CA A:GLU90 3.6 21.1 1.0
C1 A:ABQ360 3.6 18.3 1.0
C2 A:ABQ360 3.6 21.2 1.0
C A:THR95 3.6 12.8 1.0
CB A:VAL96 3.8 10.8 1.0
OG A:SER94 3.9 20.1 1.0
C A:SER94 3.9 16.3 1.0
N A:THR95 3.9 15.1 1.0
CA A:VAL96 4.1 12.0 1.0
C11 A:ABQ360 4.1 14.9 1.0
CA A:GLY91 4.3 22.0 1.0
CA A:GLY89 4.4 15.8 1.0
O A:GLU90 4.4 22.0 1.0
O A:THR95 4.7 15.8 1.0
N A:GLY89 4.8 15.6 1.0
CB A:THR95 4.9 16.9 1.0
CB A:SER94 4.9 17.8 1.0

Reference:

S.T.Murphy, G.Alton, S.Bailey, S.M.Baxi, B.J.Burke, T.A.Chappie, J.Ermolieff, R.Ferre, S.Greasley, M.Hickey, J.Humphrey, N.Kablaoui, J.Kath, S.Kazmirski, M.Kraus, S.Kupchinsky, J.Li, L.Lingardo, M.A.Marx, D.Richter, S.P.Tanis, K.Tran, W.Vernier, Z.Xie, M.J.Yin, X.H.Yu. Discovery of Novel, Potent, and Selective Inhibitors of 3-Phosphoinositide-Dependent Kinase (PDK1). J.Med.Chem. V. 54 8490 2011.
ISSN: ISSN 0022-2623
PubMed: 22040023
DOI: 10.1021/JM201019K
Page generated: Mon Jul 14 19:13:39 2025

Last articles

Na in 6AMH
Na in 6AMJ
Na in 6AM7
Na in 6AM9
Na in 6AM8
Na in 6AMC
Na in 6AKH
Na in 6AK9
Na in 6AJY
Na in 6AK8
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy