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Fluorine in PDB 3sgu: Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump

Enzymatic activity of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump

All present enzymatic activity of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump:
4.1.1.23;

Protein crystallography data

The structure of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump, PDB code: 3sgu was solved by Y.Liu, L.P.Kotra, E.F.Pai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.94 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 57.891, 103.709, 73.680, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump (pdb code 3sgu). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump, PDB code: 3sgu:

Fluorine binding site 1 out of 1 in 3sgu

Go back to Fluorine Binding Sites List in 3sgu
Fluorine binding site 1 out of 1 in the Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6- Iodo-Ump within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1000

b:19.8
occ:1.00
 F5 A:5FU1000 0.0 19.8 1.0
C5 A:5FU1000 1.4 16.5 1.0
C4 A:5FU1000 2.3 12.0 1.0
C6 A:5FU1000 2.4 17.1 1.0
O4 A:5FU1000 2.7 13.2 1.0
CE A:LYS72 2.8 13.6 1.0
NZ A:LYS72 2.8 17.6 1.0
CD2 A:LEU123 3.1 11.2 1.0
CD A:LYS72 3.4 12.7 1.0
CD1 A:LEU123 3.4 12.6 1.0
N3 A:5FU1000 3.6 10.1 1.0
N1 A:5FU1000 3.6 12.6 1.0
CG A:MET126 3.7 11.1 1.0
CE A:MET126 3.7 13.6 1.0
CG A:LEU123 3.9 10.7 1.0
C2 A:5FU1000 4.0 11.5 1.0
SD A:MET126 4.3 12.9 1.0
CG A:LYS72 4.3 13.0 1.0
O A:HOH1142 4.3 24.2 1.0
CB A:MET126 4.5 9.9 1.0
CA A:MET126 4.8 11.6 1.0
O A:HOH1106 4.8 13.4 1.0
C1' A:5FU1000 4.8 11.8 1.0
CG A:PRO180 5.0 12.5 1.0
CB A:LEU123 5.0 10.2 1.0

Reference:

Y.Liu, L.P.Kotra, E.F.Pai. Crystal Structure of Methanothermobacter Thermautotrophicus Orotidine 5'-Monophosphate Decarboxylase Covalently Modified By 5-Fluoro-6-Iodo-Ump To Be Published.
Page generated: Mon Jul 14 19:18:19 2025

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