Atomistry » Fluorine » PDB 3syn-3u2o » 3tdj
Atomistry »
  Fluorine »
    PDB 3syn-3u2o »
      3tdj »

Fluorine in PDB 3tdj: Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution

Protein crystallography data

The structure of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution, PDB code: 3tdj was solved by C.Krintel, K.Frydenvang, M.Gajhede, J.S.Kastrup, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.22 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 98.860, 121.300, 47.310, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 21.5

Other elements in 3tdj:

The structure of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution (pdb code 3tdj). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution, PDB code: 3tdj:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 3tdj

Go back to Fluorine Binding Sites List in 3tdj
Fluorine binding site 1 out of 2 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F400

b:15.6
occ:1.00
FAD B:3TJ400 0.0 15.6 1.0
CAK B:3TJ400 1.4 12.8 1.0
CAG B:3TJ400 2.4 13.2 1.0
CAE B:3TJ400 2.5 12.5 1.0
CB B:PRO105 3.1 12.0 1.0
OG B:SER108 3.2 11.6 0.3
CG B:PRO105 3.3 10.6 1.0
CA B:GLY219 3.5 12.3 1.0
O B:LYS218 3.5 7.3 1.0
CAE B:3TJ265 3.5 12.0 1.0
CAM B:3TJ400 3.6 10.0 1.0
CA B:SER108 3.6 11.5 0.7
CA B:SER108 3.6 11.5 0.3
CB B:SER108 3.7 11.5 0.7
O B:MET107 3.7 10.0 1.0
CB B:SER108 3.7 11.6 0.3
CAF B:3TJ400 3.7 12.0 1.0
CAF B:3TJ265 3.8 15.1 1.0
C B:LYS218 4.0 11.2 1.0
N B:GLY219 4.0 8.8 1.0
CAK B:3TJ265 4.0 13.5 1.0
N B:SER108 4.1 7.0 1.0
C B:MET107 4.1 10.6 1.0
CAL B:3TJ400 4.2 12.7 1.0
CAL B:3TJ265 4.4 13.0 1.0
FAD B:3TJ265 4.5 15.2 1.0
CA B:PRO105 4.6 8.8 1.0
CAG B:3TJ265 4.6 8.6 1.0
C B:GLY219 4.7 11.9 1.0
CD B:PRO105 4.8 10.4 1.0
O B:HOH309 4.8 14.2 1.0
CAM B:3TJ265 4.8 11.8 1.0
CAA B:3TJ265 4.8 21.0 1.0
OG B:SER108 4.9 10.7 0.7
C B:SER108 4.9 14.0 1.0

Fluorine binding site 2 out of 2 in 3tdj

Go back to Fluorine Binding Sites List in 3tdj
Fluorine binding site 2 out of 2 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J-L483Y- N754S) in Complex with Glutamate and Bpam-97 at 1.95 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F265

b:15.2
occ:1.00
FAD B:3TJ265 0.0 15.2 1.0
CAK B:3TJ265 1.4 13.5 1.0
CAG B:3TJ265 2.4 8.6 1.0
CAE B:3TJ265 2.5 12.0 1.0
CB A:PRO105 3.2 10.8 1.0
OG A:SER108 3.2 13.1 0.4
CG A:PRO105 3.4 8.8 1.0
O A:LYS218 3.5 10.3 1.0
CAE B:3TJ400 3.5 12.5 1.0
CA A:GLY219 3.5 8.9 1.0
CA A:SER108 3.6 13.5 0.6
CAM B:3TJ265 3.6 11.8 1.0
CA A:SER108 3.6 13.5 0.4
CB A:SER108 3.7 15.3 0.6
CAF B:3TJ265 3.7 15.1 1.0
CAF B:3TJ400 3.7 12.0 1.0
CB A:SER108 3.8 15.3 0.4
O A:MET107 3.8 10.6 1.0
C A:LYS218 3.9 11.8 1.0
N A:GLY219 4.0 8.8 1.0
CAK B:3TJ400 4.0 12.8 1.0
N A:SER108 4.1 10.1 1.0
C A:MET107 4.1 13.6 1.0
CAL B:3TJ265 4.2 13.0 1.0
CAL B:3TJ400 4.4 12.7 1.0
FAD B:3TJ400 4.5 15.6 1.0
CAA B:3TJ400 4.6 15.7 1.0
CA A:PRO105 4.7 12.0 1.0
O A:HOH283 4.7 16.1 1.0
CAG B:3TJ400 4.7 13.2 1.0
C A:GLY219 4.8 11.8 1.0
CAM B:3TJ400 4.8 10.0 1.0
CD A:PRO105 4.8 11.7 1.0
O B:HOH443 4.8 26.6 1.0
C A:SER108 4.9 13.8 1.0
OG A:SER108 5.0 13.1 0.6

Reference:

C.Krintel, K.Frydenvang, L.Olsen, M.T.Kristensen, O.De Barrios, P.Naur, P.Francotte, B.Pirotte, M.Gajhede, J.S.Kastrup. Thermodynamics and Structural Analysis of Positive Allosteric Modulation of the Ionotropic Glutamate Receptor GLUA2. Biochem.J. V. 441 173 2012.
ISSN: ISSN 0264-6021
PubMed: 21895609
DOI: 10.1042/BJ20111221
Page generated: Mon Jul 14 19:27:20 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy