Atomistry » Fluorine » PDB 3wyl-460d » 3zsi
Atomistry »
  Fluorine »
    PDB 3wyl-460d »
      3zsi »

Fluorine in PDB 3zsi: X-Ray Structure of P38ALPHA Bound to Vx-745

Enzymatic activity of X-Ray Structure of P38ALPHA Bound to Vx-745

All present enzymatic activity of X-Ray Structure of P38ALPHA Bound to Vx-745:
2.7.11.24;

Protein crystallography data

The structure of X-Ray Structure of P38ALPHA Bound to Vx-745, PDB code: 3zsi was solved by R.Azevedo, M.Van Zeeland, H.Raaijmakers, B.Kazemier, A.Oubrie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.28 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.550, 73.650, 76.570, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 27.1

Other elements in 3zsi:

The structure of X-Ray Structure of P38ALPHA Bound to Vx-745 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the X-Ray Structure of P38ALPHA Bound to Vx-745 (pdb code 3zsi). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the X-Ray Structure of P38ALPHA Bound to Vx-745, PDB code: 3zsi:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 3zsi

Go back to Fluorine Binding Sites List in 3zsi
Fluorine binding site 1 out of 2 in the X-Ray Structure of P38ALPHA Bound to Vx-745


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Structure of P38ALPHA Bound to Vx-745 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1000

b:36.1
occ:1.00
F1 A:52P1000 0.0 36.1 1.0
C2 A:52P1000 1.3 35.9 1.0
C28 A:52P1000 2.4 36.2 1.0
C3 A:52P1000 2.4 35.8 1.0
C A:VAL105 3.1 35.6 1.0
CD2 A:LEU86 3.2 34.0 1.0
N A:VAL105 3.2 35.8 1.0
C A:LEU104 3.3 35.7 1.0
N A:THR106 3.3 35.4 1.0
O A:VAL105 3.3 35.5 1.0
CB A:THR106 3.4 33.7 1.0
CB A:LEU104 3.4 34.4 1.0
CA A:VAL105 3.5 36.3 1.0
O A:LEU104 3.5 36.0 1.0
C26 A:52P1000 3.6 36.5 1.0
C4 A:52P1000 3.6 36.2 1.0
CG2 A:THR106 3.8 33.2 1.0
CA A:THR106 3.9 35.0 1.0
CA A:LEU104 3.9 35.6 1.0
C5 A:52P1000 4.1 36.5 1.0
O A:ALA51 4.4 35.4 1.0
O A:GLY85 4.5 33.2 1.0
OG1 A:THR106 4.6 33.6 1.0
CD1 A:LEU75 4.6 30.6 1.0
CG A:LEU86 4.7 34.5 1.0
F27 A:52P1000 4.7 37.3 1.0
CG A:LEU104 4.7 33.9 1.0
CG2 A:ILE84 4.9 29.7 1.0
CD1 A:LEU104 4.9 32.9 1.0
CA A:LEU86 5.0 35.0 1.0

Fluorine binding site 2 out of 2 in 3zsi

Go back to Fluorine Binding Sites List in 3zsi
Fluorine binding site 2 out of 2 in the X-Ray Structure of P38ALPHA Bound to Vx-745


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of X-Ray Structure of P38ALPHA Bound to Vx-745 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1000

b:37.3
occ:1.00
F27 A:52P1000 0.0 37.3 1.0
C26 A:52P1000 1.4 36.5 1.0
C28 A:52P1000 2.4 36.2 1.0
C5 A:52P1000 2.4 36.5 1.0
S6 A:52P1000 3.0 37.2 1.0
C7 A:52P1000 3.1 38.1 1.0
N25 A:52P1000 3.2 37.8 1.0
CG1 A:VAL38 3.2 36.7 1.0
CB A:LYS53 3.5 33.4 1.0
CB A:ALA51 3.5 35.0 1.0
N A:LYS53 3.6 35.1 1.0
C2 A:52P1000 3.6 35.9 1.0
C4 A:52P1000 3.6 36.2 1.0
C A:ALA51 3.7 36.1 1.0
C A:VAL52 3.7 36.1 1.0
O A:ALA51 3.8 35.4 1.0
CG2 A:VAL38 3.9 37.0 1.0
CA A:LYS53 3.9 34.8 1.0
N A:VAL52 4.0 36.8 1.0
C8 A:52P1000 4.0 38.1 1.0
O A:VAL52 4.1 36.7 1.0
CB A:VAL38 4.1 37.0 1.0
N24 A:52P1000 4.1 39.0 1.0
C3 A:52P1000 4.1 35.8 1.0
CA A:ALA51 4.2 36.6 1.0
CG A:LYS53 4.2 33.4 1.0
CA A:VAL52 4.2 36.5 1.0
CG2 A:THR106 4.5 33.2 1.0
O A:LEU104 4.6 36.0 1.0
F1 A:52P1000 4.7 36.1 1.0
C9 A:52P1000 4.8 38.4 1.0
C23 A:52P1000 4.8 39.0 1.0
C10 A:52P1000 4.8 39.1 1.0
CA A:VAL38 5.0 36.9 1.0

Reference:

R.Azevedo, M.Van Zeeland, H.Raaijmakers, B.Kazemier, J.De Vlieg, A.Oubrie. X-Ray Structure of P38 Alpha Bound to Tak-715: Comparison with Three Classic Inhibitors. Acta Crystallogr. D Biol. V. 68 1041 2012CRYSTALLOGR..
ISSN: ESSN 1399-0047
PubMed: 22868770
DOI: 10.1107/S090744491201997X
Page generated: Mon Jul 14 20:18:32 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy