Atomistry » Fluorine » PDB 4f9w-4fvx » 4fog
Atomistry »
  Fluorine »
    PDB 4f9w-4fvx »
      4fog »

Fluorine in PDB 4fog: Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid

Enzymatic activity of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid

All present enzymatic activity of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid:
2.1.1.45;

Protein crystallography data

The structure of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid, PDB code: 4fog was solved by M.C.M.Reddy, J.B.Bruning, W.Harshbarger, J.C.Sacchettini, Tb Structuralgenomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.94 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 184.328, 82.317, 125.980, 90.00, 132.30, 90.00
R / Rfree (%) 21.1 / 26

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid (pdb code 4fog). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid, PDB code: 4fog:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 4fog

Go back to Fluorine Binding Sites List in 4fog
Fluorine binding site 1 out of 4 in the Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F301

b:60.8
occ:1.00
F5 A:UFP301 0.0 60.8 1.0
C5 A:UFP301 1.4 58.2 1.0
C6 A:UFP301 2.4 57.5 1.0
C4 A:UFP301 2.4 53.5 1.0
N5 A:C2F302 2.7 63.6 1.0
C11 A:C2F302 2.9 64.6 1.0
O4 A:UFP301 3.0 56.0 1.0
C6 A:C2F302 3.2 60.2 1.0
OH A:TYR94 3.4 39.2 1.0
O A:HOH429 3.6 44.7 1.0
C4A A:C2F302 3.6 58.8 1.0
N1 A:UFP301 3.7 54.1 1.0
N3 A:UFP301 3.7 47.5 1.0
SG A:CYS146 3.7 47.0 0.7
C7 A:C2F302 3.7 55.6 1.0
CB A:CYS146 4.1 41.0 0.3
CB A:CYS146 4.1 40.7 0.7
C2 A:UFP301 4.2 50.8 1.0
CZ2 A:TRP80 4.3 47.8 1.0
CH2 A:TRP80 4.3 43.6 1.0
CZ A:TYR94 4.4 36.3 1.0
N8 A:C2F302 4.4 53.9 1.0
C8A A:C2F302 4.4 55.2 1.0
C4 A:C2F302 4.5 56.4 1.0
C9 A:C2F302 4.5 61.4 1.0
O4 A:C2F302 4.6 58.4 1.0
CE2 A:TYR94 4.6 37.0 1.0
O4' A:UFP301 4.6 57.1 1.0
N10 A:C2F302 4.7 60.0 1.0
C1' A:UFP301 4.8 56.5 1.0
SG A:CYS146 4.9 42.3 0.3
ND1 A:HIS147 5.0 38.9 1.0

Fluorine binding site 2 out of 4 in 4fog

Go back to Fluorine Binding Sites List in 4fog
Fluorine binding site 2 out of 4 in the Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F301

b:48.3
occ:0.57
F5 B:UFP301 0.0 48.3 0.6
C5 B:UFP301 1.4 45.2 0.6
C4 B:UFP301 2.4 37.2 0.6
C6 B:UFP301 2.4 46.8 0.6
O4 B:UFP301 2.7 38.5 0.6
O B:HOH440 3.0 45.6 1.0
OH B:TYR94 3.4 34.5 1.0
N1 B:UFP301 3.6 46.1 0.6
N3 B:UFP301 3.7 39.7 0.6
O B:HOH438 3.9 48.8 1.0
CD2 B:HIS147 3.9 34.2 1.0
CB B:CYS146 4.0 40.0 1.0
NE2 B:HIS147 4.1 30.9 1.0
SG B:CYS146 4.1 46.5 1.0
O B:HOH476 4.2 48.8 1.0
C2 B:UFP301 4.2 36.9 0.6
CZ B:TYR94 4.3 37.9 1.0
CE2 B:TYR94 4.5 38.9 1.0
O4' B:UFP301 4.7 47.2 0.6
C1' B:UFP301 4.7 43.5 0.6
CZ2 B:TRP80 4.8 47.8 1.0
OD1 B:ASN177 5.0 35.1 1.0
N B:CYS146 5.0 41.5 1.0

Fluorine binding site 3 out of 4 in 4fog

Go back to Fluorine Binding Sites List in 4fog
Fluorine binding site 3 out of 4 in the Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F301

b:53.8
occ:1.00
F5 C:UFP301 0.0 53.8 1.0
C5 C:UFP301 1.4 54.2 1.0
C6 C:UFP301 2.4 52.8 1.0
C4 C:UFP301 2.5 45.7 1.0
C11 C:C2F302 2.5 53.8 1.0
N5 C:C2F302 2.6 53.9 1.0
O4 C:UFP301 2.6 44.9 1.0
O C:HOH416 3.3 41.6 1.0
C6 C:C2F302 3.3 52.7 1.0
OH C:TYR94 3.5 34.9 1.0
N3 C:UFP301 3.6 46.8 1.0
C4A C:C2F302 3.7 54.6 1.0
N1 C:UFP301 3.7 54.4 1.0
O C:HOH415 3.8 46.5 1.0
CB C:CYS146 3.9 41.9 1.0
C7 C:C2F302 4.0 48.5 1.0
SG C:CYS146 4.0 57.1 1.0
C2 C:UFP301 4.2 50.4 1.0
CZ2 C:TRP80 4.3 36.0 1.0
CD2 C:HIS147 4.3 37.7 1.0
CZ C:TYR94 4.5 34.2 1.0
O4 C:C2F302 4.5 51.4 1.0
C4 C:C2F302 4.5 51.1 1.0
NE2 C:HIS147 4.5 35.4 1.0
C8A C:C2F302 4.5 54.7 1.0
N8 C:C2F302 4.5 54.6 1.0
C9 C:C2F302 4.5 48.1 1.0
N10 C:C2F302 4.5 51.8 1.0
CH2 C:TRP80 4.6 35.2 1.0
O4' C:UFP301 4.7 54.7 1.0
CE2 C:TYR94 4.7 30.9 1.0
C1' C:UFP301 4.8 51.7 1.0
N C:CYS146 5.0 35.8 1.0

Fluorine binding site 4 out of 4 in 4fog

Go back to Fluorine Binding Sites List in 4fog
Fluorine binding site 4 out of 4 in the Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Mtb Thya in Complex with 5-Fluoro-Dump and 5- Methyltetrahydrofolic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F301

b:46.0
occ:0.77
F5 D:UFP301 0.0 46.0 0.8
C5 D:UFP301 1.4 46.4 0.8
C4 D:UFP301 2.4 37.5 0.8
C6 D:UFP301 2.4 47.6 0.8
N5 D:C2F302 2.8 56.6 1.0
C11 D:C2F302 3.0 54.7 1.0
O4 D:UFP301 3.2 42.8 0.8
O D:HOH419 3.2 37.5 1.0
C6 D:C2F302 3.2 52.1 1.0
OH D:TYR94 3.5 37.1 1.0
N3 D:UFP301 3.6 38.9 0.8
C7 D:C2F302 3.6 48.9 1.0
N1 D:UFP301 3.7 47.0 0.8
C4A D:C2F302 3.8 50.4 1.0
SG D:CYS146 3.9 46.2 1.0
CZ2 D:TRP80 4.0 39.8 1.0
CH2 D:TRP80 4.0 39.6 1.0
C2 D:UFP301 4.2 37.7 0.8
CB D:CYS146 4.3 34.2 1.0
CE2 D:TYR94 4.3 34.0 1.0
CZ D:TYR94 4.3 35.2 1.0
N8 D:C2F302 4.3 53.9 1.0
C8A D:C2F302 4.5 50.1 1.0
C9 D:C2F302 4.5 51.1 1.0
CD2 D:HIS147 4.6 33.4 1.0
O4' D:UFP301 4.7 47.8 0.8
O D:HOH484 4.7 45.9 1.0
C1' D:UFP301 4.8 43.5 0.8
C4 D:C2F302 4.8 50.0 1.0
NE2 D:HIS147 4.8 32.5 1.0
N10 D:C2F302 4.8 45.3 1.0
O4 D:C2F302 4.9 48.5 1.0
CE2 D:TRP80 5.0 38.7 1.0

Reference:

M.C.M.Reddy, J.B.Bruning, J.C.Sacchettini. Crystal Structure of Binary and Ternary Complexes of Thymidylate Synthase (Thya) From Mycobacterium Tuberculosis: Insights Into the Selectivity and Mode of Inhibition To Be Published.
Page generated: Mon Jul 14 21:41:16 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy