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Fluorine in PDB 4mog: Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose

Enzymatic activity of Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose

All present enzymatic activity of Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose:
1.1.3.10;

Protein crystallography data

The structure of Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose, PDB code: 4mog was solved by T.C.Tan, O.Spadiut, R.Gandini, D.Haltrich, C.Divne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.11 / 2.00
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.507, 102.507, 128.626, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose (pdb code 4mog). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose, PDB code: 4mog:

Fluorine binding site 1 out of 1 in 4mog

Go back to Fluorine Binding Sites List in 4mog
Fluorine binding site 1 out of 1 in the Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pyranose 2-Oxidase V546C Mutant with 3-Fluorinated Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:30.7
occ:1.00
F3 A:G3F802 0.0 30.7 1.0
C3 A:G3F802 1.4 30.3 1.0
C2 A:G3F802 2.4 28.6 1.0
C4 A:G3F802 2.4 32.5 1.0
O2 A:G3F802 2.8 29.2 1.0
NE2 A:GLN448 2.9 20.6 1.0
O4 A:G3F802 2.9 34.4 1.0
O4 A:FDA801 3.2 20.8 1.0
ND2 A:ASN593 3.2 19.9 1.0
OE1 A:GLN448 3.3 22.2 1.0
CD A:GLN448 3.5 21.6 1.0
CG2 A:THR169 3.6 20.4 1.0
CB A:THR169 3.6 19.6 1.0
C1 A:G3F802 3.8 32.2 1.0
C5 A:G3F802 3.8 35.5 1.0
C4 A:FDA801 4.0 20.5 1.0
OG1 A:THR169 4.1 22.0 1.0
N5 A:FDA801 4.2 17.5 1.0
OD2 A:ASP452 4.2 29.3 1.0
CB A:ALA171 4.2 16.0 1.0
O5 A:G3F802 4.2 35.5 1.0
C4X A:FDA801 4.4 17.9 1.0
CZ A:PHE474 4.4 17.7 1.0
CG A:ASN593 4.5 21.0 1.0
O1 A:G3F802 4.8 34.4 1.0
N3 A:FDA801 4.9 17.5 1.0
NE2 A:HIS450 5.0 21.3 1.0
CG A:GLN448 5.0 21.6 1.0
CA A:THR169 5.0 18.9 1.0

Reference:

T.C.Tan, O.Spadiut, R.Gandini, D.Haltrich, C.Divne. Structural Basis For Binding of Fluorinated Glucose and Galactose to Trametes Multicolor Pyranose 2-Oxidase Variants with Improved Galactose Conversion. Plos One V. 9 86736 2014.
ISSN: ESSN 1932-6203
PubMed: 24466218
DOI: 10.1371/JOURNAL.PONE.0086736
Page generated: Thu Aug 1 03:59:27 2024

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