Atomistry » Fluorine » PDB 4rx0-4u7z » 4txn
Atomistry »
  Fluorine »
    PDB 4rx0-4u7z »
      4txn »

Fluorine in PDB 4txn: Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil

Enzymatic activity of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil

All present enzymatic activity of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil:
2.4.2.3;

Protein crystallography data

The structure of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil, PDB code: 4txn was solved by A.Marinho, J.Torini, L.Romanello, A.Cassago, R.Demarco, J.Brandao-Neto, H.M.Pereira, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.02 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.643, 107.488, 115.576, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.7

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil (pdb code 4txn). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil, PDB code: 4txn:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 4txn

Go back to Fluorine Binding Sites List in 4txn
Fluorine binding site 1 out of 4 in the Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F302

b:18.0
occ:1.00
F5 A:URF302 0.0 18.0 1.0
C5 A:URF302 1.3 11.5 1.0
C4 A:URF302 2.4 15.4 1.0
C6 A:URF302 2.4 12.0 1.0
O4 A:URF302 2.8 17.2 1.0
O A:SER125 3.1 16.5 1.0
C A:SER125 3.4 15.6 1.0
CD1 A:ILE265 3.6 18.2 1.0
N1 A:URF302 3.6 15.3 1.0
N3 A:URF302 3.6 16.8 1.0
CB A:ALA256 3.6 16.4 1.0
N A:GLY126 3.7 14.2 1.0
CA A:GLY126 4.0 18.8 1.0
C2 A:URF302 4.0 15.0 1.0
CA A:SER125 4.1 15.8 1.0
N A:SER125 4.3 15.3 1.0
CG1 A:VAL257 4.3 23.6 1.0
CE1 A:PHE197 4.4 15.7 1.0
NH2 A:ARG203 4.4 15.6 1.0
N A:ALA256 4.5 18.1 1.0
CA A:ALA256 4.5 18.2 1.0
CG1 A:ILE265 4.6 18.2 1.0
CZ A:PHE197 4.6 16.4 1.0
O A:HOH464 4.7 29.9 1.0
C A:ALA256 4.9 19.2 1.0
N A:VAL257 4.9 19.0 1.0

Fluorine binding site 2 out of 4 in 4txn

Go back to Fluorine Binding Sites List in 4txn
Fluorine binding site 2 out of 4 in the Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F302

b:14.3
occ:1.00
F5 B:URF302 0.0 14.3 1.0
C5 B:URF302 1.3 12.9 1.0
C4 B:URF302 2.4 13.1 1.0
C6 B:URF302 2.4 14.0 1.0
O4 B:URF302 2.8 14.4 1.0
O B:SER125 3.2 15.1 1.0
C B:SER125 3.4 14.9 1.0
CD1 B:ILE265 3.5 11.3 1.0
N3 B:URF302 3.6 15.4 1.0
N1 B:URF302 3.6 14.4 1.0
N B:GLY126 3.7 12.0 1.0
CB B:ALA256 3.7 17.8 1.0
CA B:GLY126 3.9 12.9 1.0
C2 B:URF302 4.0 14.5 1.0
CG1 B:VAL257 4.1 11.5 1.0
NH2 B:ARG203 4.2 14.9 1.0
CA B:SER125 4.2 14.3 1.0
N B:SER125 4.3 12.8 1.0
CE1 B:PHE197 4.4 15.8 1.0
N B:ALA256 4.4 15.9 1.0
CG1 B:ILE265 4.5 16.6 1.0
CA B:ALA256 4.5 15.8 1.0
CZ B:PHE197 4.5 16.1 1.0
O A:HOH483 4.7 19.8 1.0
C B:ALA256 4.8 14.9 1.0
N B:VAL257 4.9 15.5 1.0

Fluorine binding site 3 out of 4 in 4txn

Go back to Fluorine Binding Sites List in 4txn
Fluorine binding site 3 out of 4 in the Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F302

b:16.4
occ:1.00
F5 C:URF302 0.0 16.4 1.0
C5 C:URF302 1.3 15.2 1.0
C4 C:URF302 2.4 14.9 1.0
C6 C:URF302 2.4 16.4 1.0
O4 C:URF302 2.8 14.7 1.0
O C:SER125 3.2 16.0 1.0
C C:SER125 3.4 15.4 1.0
CD1 C:ILE265 3.5 19.7 1.0
N1 C:URF302 3.6 13.8 1.0
N3 C:URF302 3.6 16.8 1.0
N C:GLY126 3.7 15.1 1.0
CB C:ALA256 3.8 16.9 1.0
CA C:GLY126 4.0 15.4 1.0
C2 C:URF302 4.0 15.5 1.0
CA C:SER125 4.1 16.4 1.0
CG1 C:VAL257 4.2 13.5 1.0
N C:SER125 4.3 14.8 1.0
NH2 C:ARG203 4.4 14.2 1.0
CE1 C:PHE197 4.5 15.7 1.0
N C:ALA256 4.5 15.1 1.0
CA C:ALA256 4.6 17.5 1.0
CG1 C:ILE265 4.6 20.1 1.0
CZ C:PHE197 4.6 14.2 1.0
C C:ALA256 4.9 18.0 1.0
O D:HOH662 4.9 18.2 1.0
N C:VAL257 5.0 15.5 1.0

Fluorine binding site 4 out of 4 in 4txn

Go back to Fluorine Binding Sites List in 4txn
Fluorine binding site 4 out of 4 in the Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Uridine Phosphorylase From Schistosoma Mansoni in Complex with 5-Fluorouracil within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F302

b:17.9
occ:1.00
F5 D:URF302 0.0 17.9 1.0
C5 D:URF302 1.3 16.4 1.0
C4 D:URF302 2.4 16.3 1.0
C6 D:URF302 2.4 14.5 1.0
O4 D:URF302 2.8 16.7 1.0
O D:SER125 3.0 17.9 1.0
C D:SER125 3.3 15.1 1.0
CB D:ALA256 3.6 16.7 1.0
N1 D:URF302 3.6 13.7 1.0
N3 D:URF302 3.6 15.8 1.0
CD1 D:ILE265 3.6 18.3 1.0
N D:GLY126 3.7 11.6 1.0
CA D:GLY126 4.0 16.9 1.0
C2 D:URF302 4.0 15.8 1.0
CA D:SER125 4.1 14.1 1.0
N D:SER125 4.2 15.8 1.0
CG1 D:VAL257 4.2 17.4 1.0
NH2 D:ARG203 4.4 11.9 1.0
CE1 D:PHE197 4.4 11.5 1.0
N D:ALA256 4.4 11.8 1.0
CA D:ALA256 4.5 17.5 1.0
CG1 D:ILE265 4.5 15.3 1.0
CZ D:PHE197 4.7 11.7 1.0
O D:HOH535 4.7 18.5 1.0
C D:ALA256 4.8 19.8 1.0
N D:VAL257 4.9 17.2 1.0

Reference:

A.M.Da Silva Neto, J.R.Torini De Souza, L.Romanello, A.Cassago, V.H.Serrao, R.Demarco, J.Brandao-Neto, R.C.Garratt, H.D.Pereira. Analysis of Two Schistosoma Mansoni Uridine Phosphorylases Isoforms Suggests the Emergence of A Protein with A Non-Canonical Function. Biochimie V. 125 12 2016.
ISSN: ISSN 0300-9084
PubMed: 26898674
DOI: 10.1016/J.BIOCHI.2016.02.007
Page generated: Tue Jul 15 00:46:20 2025

Last articles

Mg in 6O3P
Mg in 6O2R
Mg in 6O2Q
Mg in 6O36
Mg in 6O2P
Mg in 6O1V
Mg in 6O0J
Mg in 6O1E
Mg in 6O0G
Mg in 6NYY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy