Atomistry » Fluorine » PDB 4xyf-4ymo » 4y3m
Atomistry »
  Fluorine »
    PDB 4xyf-4ymo »
      4y3m »

Fluorine in PDB 4y3m: Endothiapepsin in Complex with Fragment 103

Enzymatic activity of Endothiapepsin in Complex with Fragment 103

All present enzymatic activity of Endothiapepsin in Complex with Fragment 103:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 103, PDB code: 4y3m was solved by J.Schiebel, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.27 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.195, 72.528, 104.051, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 16.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Endothiapepsin in Complex with Fragment 103 (pdb code 4y3m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Endothiapepsin in Complex with Fragment 103, PDB code: 4y3m:

Fluorine binding site 1 out of 1 in 4y3m

Go back to Fluorine Binding Sites List in 4y3m
Fluorine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 103


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Endothiapepsin in Complex with Fragment 103 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F405

b:26.8
occ:0.84
F A:45Y405 0.0 26.8 0.8
C A:45Y405 1.4 22.7 0.8
C1 A:45Y405 2.3 21.4 0.8
C5 A:45Y405 2.3 20.0 0.8
HG21 A:ILE302 3.0 20.7 1.0
HG22 A:ILE302 3.3 20.7 1.0
CG2 A:ILE302 3.6 17.2 1.0
C2 A:45Y405 3.6 19.1 0.8
C4 A:45Y405 3.6 18.4 0.8
HZ A:PHE194 3.9 21.4 1.0
HE1 A:PHE194 3.9 26.1 1.0
HB A:ILE302 4.0 24.3 1.0
C3 A:45Y405 4.1 18.4 0.8
HD13 A:ILE302 4.1 38.3 1.0
CZ A:PHE194 4.2 17.9 1.0
CE1 A:PHE194 4.2 21.7 1.0
HG23 A:ILE302 4.3 20.7 1.0
CB A:ILE302 4.4 20.2 1.0
HG22 A:ILE300 4.4 25.8 1.0
O2 A:PGE404 4.6 42.4 1.0
HD13 A:ILE217 4.6 13.8 1.0
HD12 A:ILE302 4.7 38.3 1.0
CD1 A:ILE302 4.8 31.9 1.0
HG23 A:ILE300 4.9 25.8 1.0
O A:ILE300 4.9 22.9 1.0
C1 A:PGE404 4.9 42.2 1.0

Reference:

J.Schiebel, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Tue Jul 15 01:37:57 2025

Last articles

Mg in 4JI1
Mg in 4JI0
Mg in 4JI2
Mg in 4JI3
Mg in 4JHD
Mg in 4JH6
Mg in 4JH8
Mg in 4JH7
Mg in 4JH3
Mg in 4JH5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy