Fluorine in PDB 4yl3: Crystal Structures of Mpges-1 Inhibitor Complexes
Enzymatic activity of Crystal Structures of Mpges-1 Inhibitor Complexes
All present enzymatic activity of Crystal Structures of Mpges-1 Inhibitor Complexes:
5.3.99.3;
Protein crystallography data
The structure of Crystal Structures of Mpges-1 Inhibitor Complexes, PDB code: 4yl3
was solved by
J.G.Luz,
S.Antonysamy,
S.L.Kuklish,
M.J.Fisher,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.41
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
76.434,
76.434,
123.264,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16.6 /
18.3
|
Other elements in 4yl3:
The structure of Crystal Structures of Mpges-1 Inhibitor Complexes also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structures of Mpges-1 Inhibitor Complexes
(pdb code 4yl3). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 7 binding sites of Fluorine where determined in the
Crystal Structures of Mpges-1 Inhibitor Complexes, PDB code: 4yl3:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Fluorine binding site 1 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 1 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:24.5
occ:1.00
|
F4
|
A:4U9201
|
0.0
|
24.5
|
1.0
|
C19
|
A:4U9201
|
1.3
|
20.9
|
1.0
|
C20
|
A:4U9201
|
2.4
|
19.9
|
1.0
|
C18
|
A:4U9201
|
2.4
|
19.5
|
1.0
|
C1
|
A:4U9201
|
2.8
|
17.0
|
1.0
|
O
|
A:HOH305
|
2.9
|
39.5
|
1.0
|
N1
|
A:4U9201
|
3.1
|
19.9
|
1.0
|
C21
|
A:4U9201
|
3.6
|
20.6
|
1.0
|
C23
|
A:4U9201
|
3.6
|
20.3
|
1.0
|
N2
|
A:4U9201
|
3.7
|
19.5
|
1.0
|
C22
|
A:4U9201
|
4.1
|
19.6
|
1.0
|
C2
|
A:4U9201
|
4.2
|
21.2
|
1.0
|
C3
|
A:4U9201
|
4.5
|
19.9
|
1.0
|
OG
|
A:SER127
|
4.6
|
27.2
|
0.5
|
SG2
|
A:GSH202
|
4.8
|
23.3
|
0.7
|
|
Fluorine binding site 2 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 2 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:35.1
occ:0.50
|
F3
|
A:4U9201
|
0.0
|
35.1
|
0.5
|
F2
|
A:4U9201
|
1.3
|
31.2
|
0.5
|
F3
|
A:4U9201
|
1.3
|
26.2
|
0.5
|
C13
|
A:4U9201
|
1.4
|
30.9
|
0.5
|
C13
|
A:4U9201
|
1.4
|
28.7
|
0.5
|
F1
|
A:4U9201
|
2.2
|
31.0
|
0.5
|
F2
|
A:4U9201
|
2.2
|
35.1
|
0.5
|
C12
|
A:4U9201
|
2.4
|
30.5
|
1.0
|
F1
|
A:4U9201
|
2.6
|
28.2
|
0.5
|
C14
|
A:4U9201
|
3.1
|
27.7
|
1.0
|
C11
|
A:4U9201
|
3.4
|
27.8
|
0.7
|
CD1
|
A:LEU132
|
4.3
|
21.6
|
1.0
|
C15
|
A:4U9201
|
4.4
|
26.3
|
1.0
|
C10
|
A:4U9201
|
4.6
|
28.8
|
0.7
|
C9
|
A:4U9201
|
5.0
|
27.8
|
1.0
|
|
Fluorine binding site 3 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 3 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:26.2
occ:0.50
|
F3
|
A:4U9201
|
0.0
|
26.2
|
0.5
|
F1
|
A:4U9201
|
1.1
|
31.0
|
0.5
|
F3
|
A:4U9201
|
1.3
|
35.1
|
0.5
|
C13
|
A:4U9201
|
1.3
|
30.9
|
0.5
|
C13
|
A:4U9201
|
1.4
|
28.7
|
0.5
|
F1
|
A:4U9201
|
2.2
|
28.2
|
0.5
|
F2
|
A:4U9201
|
2.2
|
31.2
|
0.5
|
C12
|
A:4U9201
|
2.4
|
30.5
|
1.0
|
F2
|
A:4U9201
|
2.5
|
35.1
|
0.5
|
C14
|
A:4U9201
|
2.8
|
27.7
|
1.0
|
CD1
|
A:LEU132
|
3.4
|
21.6
|
1.0
|
C11
|
A:4U9201
|
3.7
|
27.8
|
0.7
|
CD1
|
A:LEU135
|
4.0
|
28.7
|
1.0
|
C15
|
A:4U9201
|
4.2
|
26.3
|
1.0
|
CG
|
A:LEU132
|
4.7
|
18.5
|
1.0
|
C10
|
A:4U9201
|
4.8
|
28.8
|
0.7
|
CB
|
A:LEU132
|
5.0
|
17.5
|
1.0
|
|
Fluorine binding site 4 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 4 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:35.1
occ:0.50
|
F2
|
A:4U9201
|
0.0
|
35.1
|
0.5
|
F2
|
A:4U9201
|
1.2
|
31.2
|
0.5
|
F1
|
A:4U9201
|
1.2
|
28.2
|
0.5
|
C13
|
A:4U9201
|
1.3
|
28.7
|
0.5
|
C13
|
A:4U9201
|
1.4
|
30.9
|
0.5
|
F3
|
A:4U9201
|
2.2
|
35.1
|
0.5
|
F1
|
A:4U9201
|
2.2
|
31.0
|
0.5
|
C12
|
A:4U9201
|
2.4
|
30.5
|
1.0
|
F3
|
A:4U9201
|
2.5
|
26.2
|
0.5
|
C11
|
A:4U9201
|
2.8
|
27.8
|
0.7
|
C14
|
A:4U9201
|
3.7
|
27.7
|
1.0
|
C10
|
A:4U9201
|
4.2
|
28.8
|
0.7
|
CD1
|
A:LEU135
|
4.7
|
28.7
|
1.0
|
C15
|
A:4U9201
|
4.8
|
26.3
|
1.0
|
|
Fluorine binding site 5 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 5 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:31.2
occ:0.50
|
F2
|
A:4U9201
|
0.0
|
31.2
|
0.5
|
F2
|
A:4U9201
|
1.2
|
35.1
|
0.5
|
F3
|
A:4U9201
|
1.3
|
35.1
|
0.5
|
C13
|
A:4U9201
|
1.4
|
30.9
|
0.5
|
C13
|
A:4U9201
|
1.4
|
28.7
|
0.5
|
F1
|
A:4U9201
|
2.2
|
28.2
|
0.5
|
F3
|
A:4U9201
|
2.2
|
26.2
|
0.5
|
C12
|
A:4U9201
|
2.4
|
30.5
|
1.0
|
F1
|
A:4U9201
|
2.5
|
31.0
|
0.5
|
C11
|
A:4U9201
|
2.9
|
27.8
|
0.7
|
C14
|
A:4U9201
|
3.5
|
27.7
|
1.0
|
C10
|
A:4U9201
|
4.3
|
28.8
|
0.7
|
C15
|
A:4U9201
|
4.7
|
26.3
|
1.0
|
C9
|
A:4U9201
|
5.0
|
27.8
|
1.0
|
|
Fluorine binding site 6 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 6 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:31.0
occ:0.50
|
F1
|
A:4U9201
|
0.0
|
31.0
|
0.5
|
F3
|
A:4U9201
|
1.1
|
26.2
|
0.5
|
F1
|
A:4U9201
|
1.3
|
28.2
|
0.5
|
C13
|
A:4U9201
|
1.4
|
28.7
|
0.5
|
C13
|
A:4U9201
|
1.4
|
30.9
|
0.5
|
F3
|
A:4U9201
|
2.2
|
35.1
|
0.5
|
F2
|
A:4U9201
|
2.2
|
35.1
|
0.5
|
C12
|
A:4U9201
|
2.4
|
30.5
|
1.0
|
F2
|
A:4U9201
|
2.5
|
31.2
|
0.5
|
C14
|
A:4U9201
|
2.9
|
27.7
|
1.0
|
CD1
|
A:LEU135
|
3.1
|
28.7
|
1.0
|
C11
|
A:4U9201
|
3.6
|
27.8
|
0.7
|
CD1
|
A:LEU132
|
4.0
|
21.6
|
1.0
|
C15
|
A:4U9201
|
4.3
|
26.3
|
1.0
|
CG
|
A:LEU135
|
4.6
|
23.9
|
1.0
|
C10
|
A:4U9201
|
4.7
|
28.8
|
0.7
|
|
Fluorine binding site 7 out
of 7 in 4yl3
Go back to
Fluorine Binding Sites List in 4yl3
Fluorine binding site 7 out
of 7 in the Crystal Structures of Mpges-1 Inhibitor Complexes
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structures of Mpges-1 Inhibitor Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:28.2
occ:0.50
|
F1
|
A:4U9201
|
0.0
|
28.2
|
0.5
|
F2
|
A:4U9201
|
1.2
|
35.1
|
0.5
|
F1
|
A:4U9201
|
1.3
|
31.0
|
0.5
|
C13
|
A:4U9201
|
1.4
|
28.7
|
0.5
|
C13
|
A:4U9201
|
1.4
|
30.9
|
0.5
|
F3
|
A:4U9201
|
2.2
|
26.2
|
0.5
|
F2
|
A:4U9201
|
2.2
|
31.2
|
0.5
|
C12
|
A:4U9201
|
2.4
|
30.5
|
1.0
|
F3
|
A:4U9201
|
2.6
|
35.1
|
0.5
|
C11
|
A:4U9201
|
3.0
|
27.8
|
0.7
|
C14
|
A:4U9201
|
3.4
|
27.7
|
1.0
|
CD1
|
A:LEU135
|
3.5
|
28.7
|
1.0
|
C10
|
A:4U9201
|
4.3
|
28.8
|
0.7
|
C15
|
A:4U9201
|
4.6
|
26.3
|
1.0
|
C9
|
A:4U9201
|
5.0
|
27.8
|
1.0
|
CG
|
A:LEU135
|
5.0
|
23.9
|
1.0
|
|
Reference:
J.G.Luz,
S.Antonysamy,
S.L.Kuklish,
B.Condon,
M.R.Lee,
D.Allison,
X.P.Yu,
S.Chandrasekhar,
R.Backer,
A.Zhang,
M.Russell,
S.S.Chang,
A.Harvey,
A.V.Sloan,
M.J.Fisher.
Crystal Structures of Mpges-1 Inhibitor Complexes Form A Basis For the Rational Design of Potent Analgesic and Anti-Inflammatory Therapeutics. J.Med.Chem. V. 58 4727 2015.
ISSN: ISSN 0022-2623
PubMed: 25961169
DOI: 10.1021/ACS.JMEDCHEM.5B00330
Page generated: Thu Aug 1 07:00:54 2024
|