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Fluorine in PDB 5hqe: Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T

Enzymatic activity of Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T

All present enzymatic activity of Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T:
1.3.5.2;

Protein crystallography data

The structure of Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T, PDB code: 5hqe was solved by J.Huang, D.Wu, Q.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.24 / 1.62
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.624, 90.624, 123.020, 90.00, 90.00, 120.00
R / Rfree (%) 16 / 18.2

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T (pdb code 5hqe). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T, PDB code: 5hqe:

Fluorine binding site 1 out of 1 in 5hqe

Go back to Fluorine Binding Sites List in 5hqe
Fluorine binding site 1 out of 1 in the Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with Compound 18T within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:31.2
occ:1.00
F20 A:64B401 0.0 31.2 1.0
C19 A:64B401 1.3 25.1 1.0
C14 A:64B401 2.3 21.5 1.0
C18 A:64B401 2.4 22.8 1.0
N9 A:64B401 2.7 20.9 1.0
C8 A:64B401 3.1 24.8 1.0
C1 A:64B401 3.2 22.3 1.0
C2 A:64B401 3.2 22.6 1.0
SD A:MET43 3.4 21.9 1.0
CD2 A:LEU42 3.4 31.2 1.0
C10 A:64B401 3.5 24.2 1.0
C17 A:64B401 3.6 19.3 1.0
C15 A:64B401 3.6 22.5 1.0
N3 A:64B401 3.6 23.7 1.0
CD1 A:LEU46 3.7 32.5 1.0
O13 A:64B401 4.0 23.2 1.0
C16 A:64B401 4.1 20.4 1.0
CE A:MET43 4.2 25.2 1.0
CE2 A:TYR38 4.2 27.1 1.0
CD A:PRO364 4.3 18.6 1.0
S12 A:64B401 4.3 26.1 1.0
CG A:LEU42 4.3 30.1 1.0
C4 A:64B401 4.4 27.9 1.0
CD2 A:TYR38 4.5 25.1 1.0
C11 A:64B401 4.5 26.0 1.0
O21 A:64B401 4.8 24.9 1.0
CG A:PRO364 4.9 18.5 1.0
O5 A:64B401 4.9 27.9 1.0
C22 A:64B401 5.0 25.4 1.0

Reference:

J.Huang, D.Wu, Q.Lu. Crystal Structure of Human Dihydroorotate Dehydrogenase (Dhodh) with 18T at 1.62 A Resolution To Be Published.
Page generated: Tue Jul 15 03:58:15 2025

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