Fluorine in PDB 5jcz: RAB11 Bound to Myova-Gtd
Protein crystallography data
The structure of RAB11 Bound to Myova-Gtd, PDB code: 5jcz
was solved by
O.Pylypenko,
W.Attanda,
C.Gauquelin,
G.Malherbes,
A.Houdusse,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.88 /
2.06
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
215.790,
128.420,
89.020,
90.00,
98.27,
90.00
|
|
R / Rfree (%)
|
18 /
20.8
|
Other elements in 5jcz:
The structure of RAB11 Bound to Myova-Gtd also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the RAB11 Bound to Myova-Gtd
(pdb code 5jcz). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the
RAB11 Bound to Myova-Gtd, PDB code: 5jcz:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Fluorine binding site 1 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 1 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F203
b:38.7
occ:1.00
|
F1
|
A:BEF203
|
0.0
|
38.7
|
1.0
|
|
BE
|
A:BEF203
|
1.4
|
43.3
|
1.0
|
|
F2
|
A:BEF203
|
2.2
|
40.2
|
1.0
|
|
F3
|
A:BEF203
|
2.3
|
40.8
|
1.0
|
|
O3B
|
A:GDP202
|
2.5
|
38.0
|
1.0
|
|
NZ
|
A:LYS24
|
2.8
|
35.3
|
1.0
|
|
N
|
A:GLY69
|
3.0
|
40.9
|
1.0
|
|
CA
|
A:ALA68
|
3.2
|
35.1
|
1.0
|
|
CA
|
A:SER20
|
3.3
|
42.3
|
0.6
|
|
CA
|
A:SER20
|
3.3
|
42.2
|
0.5
|
|
CE
|
A:LYS24
|
3.5
|
39.3
|
1.0
|
|
OG
|
A:SER20
|
3.5
|
47.8
|
0.6
|
|
PB
|
A:GDP202
|
3.6
|
38.0
|
1.0
|
|
C
|
A:ALA68
|
3.6
|
43.5
|
1.0
|
|
O2B
|
A:GDP202
|
3.7
|
37.0
|
1.0
|
|
O
|
A:HOH326
|
3.7
|
40.1
|
1.0
|
|
CB
|
A:SER20
|
3.8
|
42.4
|
0.6
|
|
CB
|
A:ALA68
|
3.8
|
41.6
|
1.0
|
|
CB
|
A:SER20
|
3.8
|
42.6
|
0.5
|
|
OG
|
A:SER20
|
3.9
|
44.6
|
0.5
|
|
MG
|
A:MG201
|
3.9
|
43.0
|
1.0
|
|
O1B
|
A:GDP202
|
4.0
|
35.9
|
1.0
|
|
CA
|
A:GLY69
|
4.1
|
45.7
|
1.0
|
|
N
|
A:GLY21
|
4.1
|
38.1
|
1.0
|
|
N
|
A:SER20
|
4.1
|
40.4
|
1.0
|
|
O
|
A:THR67
|
4.1
|
35.9
|
1.0
|
|
O
|
A:ASP19
|
4.2
|
36.3
|
1.0
|
|
C
|
A:SER20
|
4.3
|
40.7
|
1.0
|
|
N
|
A:ALA68
|
4.4
|
34.8
|
1.0
|
|
C
|
A:ASP19
|
4.5
|
41.6
|
1.0
|
|
O
|
A:HOH431
|
4.6
|
63.5
|
1.0
|
|
C
|
A:THR67
|
4.7
|
36.2
|
1.0
|
|
O
|
A:GLY18
|
4.8
|
40.9
|
1.0
|
|
O
|
A:ALA68
|
4.8
|
40.8
|
1.0
|
|
OG
|
A:SER42
|
4.8
|
78.2
|
1.0
|
|
O3A
|
A:GDP202
|
4.9
|
41.4
|
1.0
|
|
N
|
A:THR43
|
5.0
|
42.8
|
1.0
|
|
CD
|
A:LYS24
|
5.0
|
37.0
|
1.0
|
|
Fluorine binding site 2 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 2 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F203
b:40.2
occ:1.00
|
F2
|
A:BEF203
|
0.0
|
40.2
|
1.0
|
|
BE
|
A:BEF203
|
1.4
|
43.3
|
1.0
|
|
F3
|
A:BEF203
|
2.2
|
40.8
|
1.0
|
|
F1
|
A:BEF203
|
2.2
|
38.7
|
1.0
|
|
O3B
|
A:GDP202
|
2.5
|
38.0
|
1.0
|
|
O
|
A:HOH431
|
2.6
|
63.5
|
1.0
|
|
OG
|
A:SER20
|
2.7
|
44.6
|
0.5
|
|
OG
|
A:SER42
|
3.1
|
78.2
|
1.0
|
|
CB
|
A:SER20
|
3.4
|
42.4
|
0.6
|
|
CB
|
A:SER20
|
3.4
|
42.6
|
0.5
|
|
OG
|
A:SER20
|
3.5
|
47.8
|
0.6
|
|
CA
|
A:SER42
|
3.5
|
56.1
|
1.0
|
|
CB
|
A:SER42
|
3.6
|
59.4
|
1.0
|
|
CA
|
A:SER20
|
3.6
|
42.3
|
0.6
|
|
CA
|
A:SER20
|
3.6
|
42.2
|
0.5
|
|
N
|
A:GLY21
|
3.9
|
38.1
|
1.0
|
|
N
|
A:THR43
|
3.9
|
42.8
|
1.0
|
|
PB
|
A:GDP202
|
4.0
|
38.0
|
1.0
|
|
CB
|
A:ALA68
|
4.1
|
41.6
|
1.0
|
|
MG
|
A:MG201
|
4.2
|
43.0
|
1.0
|
|
C
|
A:SER20
|
4.2
|
40.7
|
1.0
|
|
C
|
A:SER42
|
4.2
|
43.8
|
1.0
|
|
O
|
A:HOH336
|
4.3
|
67.3
|
1.0
|
|
CA
|
A:ALA68
|
4.4
|
35.1
|
1.0
|
|
O
|
A:HOH316
|
4.4
|
38.8
|
1.0
|
|
O1B
|
A:GDP202
|
4.5
|
35.9
|
1.0
|
|
N
|
A:GLY69
|
4.6
|
40.9
|
1.0
|
|
N
|
A:SER42
|
4.6
|
52.1
|
1.0
|
|
O2B
|
A:GDP202
|
4.8
|
37.0
|
1.0
|
|
O3A
|
A:GDP202
|
4.8
|
41.4
|
1.0
|
|
NZ
|
A:LYS24
|
4.9
|
35.3
|
1.0
|
|
N
|
A:SER20
|
4.9
|
40.4
|
1.0
|
|
CA
|
A:GLY21
|
4.9
|
38.2
|
1.0
|
|
O
|
A:HOH326
|
5.0
|
40.1
|
1.0
|
|
Fluorine binding site 3 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 3 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F203
b:40.8
occ:1.00
|
F3
|
A:BEF203
|
0.0
|
40.8
|
1.0
|
|
BE
|
A:BEF203
|
1.4
|
43.3
|
1.0
|
|
MG
|
A:MG201
|
2.1
|
43.0
|
1.0
|
|
F2
|
A:BEF203
|
2.2
|
40.2
|
1.0
|
|
F1
|
A:BEF203
|
2.3
|
38.7
|
1.0
|
|
O3B
|
A:GDP202
|
2.5
|
38.0
|
1.0
|
|
O
|
A:HOH326
|
2.9
|
40.1
|
1.0
|
|
OG1
|
A:THR43
|
3.0
|
40.4
|
1.0
|
|
N
|
A:THR43
|
3.0
|
42.8
|
1.0
|
|
O
|
A:HOH316
|
3.1
|
38.8
|
1.0
|
|
O1B
|
A:GDP202
|
3.1
|
35.9
|
1.0
|
|
PB
|
A:GDP202
|
3.4
|
38.0
|
1.0
|
|
CB
|
A:THR43
|
3.4
|
36.9
|
1.0
|
|
CA
|
A:ALA68
|
3.7
|
35.1
|
1.0
|
|
CA
|
A:THR43
|
3.8
|
40.8
|
1.0
|
|
CB
|
A:ALA68
|
3.9
|
41.6
|
1.0
|
|
CA
|
A:SER42
|
4.0
|
56.1
|
1.0
|
|
C
|
A:SER42
|
4.0
|
43.8
|
1.0
|
|
OG
|
A:SER25
|
4.2
|
39.0
|
1.0
|
|
OG
|
A:SER42
|
4.2
|
78.2
|
1.0
|
|
O
|
A:HOH431
|
4.2
|
63.5
|
1.0
|
|
O2B
|
A:GDP202
|
4.3
|
37.0
|
1.0
|
|
N
|
A:ALA68
|
4.3
|
34.8
|
1.0
|
|
O
|
A:THR67
|
4.4
|
35.9
|
1.0
|
|
NZ
|
A:LYS24
|
4.4
|
35.3
|
1.0
|
|
O3A
|
A:GDP202
|
4.6
|
41.4
|
1.0
|
|
C
|
A:THR67
|
4.6
|
36.2
|
1.0
|
|
CE
|
A:LYS24
|
4.7
|
39.3
|
1.0
|
|
CB
|
A:SER42
|
4.7
|
59.4
|
1.0
|
|
N
|
A:GLY69
|
4.7
|
40.9
|
1.0
|
|
O2A
|
A:GDP202
|
4.7
|
41.8
|
1.0
|
|
O
|
A:LYS41
|
4.7
|
44.6
|
1.0
|
|
C
|
A:ALA68
|
4.8
|
43.5
|
1.0
|
|
CG2
|
A:THR43
|
4.8
|
36.2
|
1.0
|
|
O
|
A:HOH336
|
4.8
|
67.3
|
1.0
|
|
OG
|
A:SER20
|
4.9
|
44.6
|
0.5
|
|
C
|
A:THR43
|
4.9
|
40.4
|
1.0
|
|
O
|
A:THR43
|
4.9
|
43.2
|
1.0
|
|
Fluorine binding site 4 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 4 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F203
b:49.2
occ:1.00
|
F1
|
D:BEF203
|
0.0
|
49.2
|
1.0
|
|
BE
|
D:BEF203
|
1.4
|
46.8
|
1.0
|
|
F2
|
D:BEF203
|
2.2
|
49.3
|
1.0
|
|
F3
|
D:BEF203
|
2.2
|
46.0
|
1.0
|
|
O1B
|
D:GDP202
|
2.5
|
45.9
|
1.0
|
|
NZ
|
D:LYS24
|
2.9
|
42.7
|
1.0
|
|
N
|
D:GLY69
|
3.0
|
48.5
|
1.0
|
|
CA
|
D:ALA68
|
3.2
|
50.2
|
1.0
|
|
CA
|
D:SER20
|
3.3
|
50.8
|
1.0
|
|
PB
|
D:GDP202
|
3.6
|
47.0
|
1.0
|
|
C
|
D:ALA68
|
3.6
|
53.0
|
1.0
|
|
CE
|
D:LYS24
|
3.7
|
45.8
|
1.0
|
|
O
|
D:HOH326
|
3.7
|
42.6
|
1.0
|
|
CB
|
D:SER20
|
3.7
|
58.9
|
1.0
|
|
O3B
|
D:GDP202
|
3.8
|
48.9
|
1.0
|
|
OG
|
D:SER20
|
3.8
|
70.1
|
1.0
|
|
CB
|
D:ALA68
|
3.8
|
45.5
|
1.0
|
|
MG
|
D:MG201
|
3.9
|
47.5
|
1.0
|
|
O2B
|
D:GDP202
|
4.0
|
41.7
|
1.0
|
|
O
|
D:THR67
|
4.0
|
45.7
|
1.0
|
|
N
|
D:GLY21
|
4.1
|
47.4
|
1.0
|
|
CA
|
D:GLY69
|
4.1
|
53.3
|
1.0
|
|
N
|
D:SER20
|
4.1
|
51.1
|
1.0
|
|
C
|
D:SER20
|
4.2
|
54.6
|
1.0
|
|
N
|
D:ALA68
|
4.3
|
45.2
|
1.0
|
|
O
|
D:ASP19
|
4.3
|
50.9
|
1.0
|
|
C
|
D:ASP19
|
4.6
|
51.8
|
1.0
|
|
C
|
D:THR67
|
4.6
|
48.2
|
1.0
|
|
OG
|
D:SER42
|
4.8
|
54.1
|
0.5
|
|
O
|
D:ALA68
|
4.8
|
48.5
|
1.0
|
|
O
|
D:GLY18
|
4.8
|
49.5
|
1.0
|
|
O3A
|
D:GDP202
|
5.0
|
49.2
|
1.0
|
|
N
|
D:THR43
|
5.0
|
47.3
|
1.0
|
|
Fluorine binding site 5 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 5 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F203
b:49.3
occ:1.00
|
F2
|
D:BEF203
|
0.0
|
49.3
|
1.0
|
|
BE
|
D:BEF203
|
1.4
|
46.8
|
1.0
|
|
F3
|
D:BEF203
|
2.2
|
46.0
|
1.0
|
|
F1
|
D:BEF203
|
2.2
|
49.2
|
1.0
|
|
O1B
|
D:GDP202
|
2.5
|
45.9
|
1.0
|
|
OG
|
D:SER20
|
2.6
|
70.1
|
1.0
|
|
OG
|
D:SER42
|
3.1
|
54.1
|
0.5
|
|
CB
|
D:SER20
|
3.4
|
58.9
|
1.0
|
|
CA
|
D:SER42
|
3.5
|
54.2
|
0.5
|
|
CA
|
D:SER42
|
3.5
|
54.3
|
0.5
|
|
CB
|
D:SER42
|
3.5
|
56.9
|
0.5
|
|
CB
|
D:SER42
|
3.6
|
56.9
|
0.5
|
|
CA
|
D:SER20
|
3.6
|
50.8
|
1.0
|
|
N
|
D:GLY21
|
3.8
|
47.4
|
1.0
|
|
O
|
D:HOH333
|
3.9
|
63.2
|
1.0
|
|
PB
|
D:GDP202
|
3.9
|
47.0
|
1.0
|
|
N
|
D:THR43
|
4.0
|
47.3
|
1.0
|
|
CB
|
D:ALA68
|
4.1
|
45.5
|
1.0
|
|
C
|
D:SER20
|
4.1
|
54.6
|
1.0
|
|
MG
|
D:MG201
|
4.2
|
47.5
|
1.0
|
|
C
|
D:SER42
|
4.3
|
48.0
|
1.0
|
|
CA
|
D:ALA68
|
4.4
|
50.2
|
1.0
|
|
O2B
|
D:GDP202
|
4.4
|
41.7
|
1.0
|
|
O
|
D:HOH309
|
4.5
|
40.6
|
1.0
|
|
N
|
D:SER42
|
4.6
|
54.5
|
1.0
|
|
N
|
D:GLY69
|
4.6
|
48.5
|
1.0
|
|
O
|
D:HOH404
|
4.7
|
77.5
|
1.0
|
|
O3B
|
D:GDP202
|
4.8
|
48.9
|
1.0
|
|
O3A
|
D:GDP202
|
4.8
|
49.2
|
1.0
|
|
CA
|
D:GLY21
|
4.9
|
43.8
|
1.0
|
|
NZ
|
D:LYS24
|
4.9
|
42.7
|
1.0
|
|
OG
|
D:SER42
|
4.9
|
59.3
|
0.5
|
|
N
|
D:SER20
|
4.9
|
51.1
|
1.0
|
|
O
|
D:HOH326
|
5.0
|
42.6
|
1.0
|
|
Fluorine binding site 6 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 6 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F203
b:46.0
occ:1.00
|
F3
|
D:BEF203
|
0.0
|
46.0
|
1.0
|
|
BE
|
D:BEF203
|
1.4
|
46.8
|
1.0
|
|
MG
|
D:MG201
|
2.1
|
47.5
|
1.0
|
|
F2
|
D:BEF203
|
2.2
|
49.3
|
1.0
|
|
F1
|
D:BEF203
|
2.2
|
49.2
|
1.0
|
|
O1B
|
D:GDP202
|
2.5
|
45.9
|
1.0
|
|
O
|
D:HOH326
|
2.9
|
42.6
|
1.0
|
|
O2B
|
D:GDP202
|
3.0
|
41.7
|
1.0
|
|
O
|
D:HOH309
|
3.1
|
40.6
|
1.0
|
|
N
|
D:THR43
|
3.1
|
47.3
|
1.0
|
|
OG1
|
D:THR43
|
3.1
|
51.0
|
1.0
|
|
PB
|
D:GDP202
|
3.3
|
47.0
|
1.0
|
|
CB
|
D:THR43
|
3.5
|
51.6
|
1.0
|
|
CA
|
D:ALA68
|
3.7
|
50.2
|
1.0
|
|
CA
|
D:THR43
|
3.9
|
47.3
|
1.0
|
|
CA
|
D:SER42
|
3.9
|
54.2
|
0.5
|
|
CA
|
D:SER42
|
3.9
|
54.3
|
0.5
|
|
CB
|
D:ALA68
|
4.0
|
45.5
|
1.0
|
|
C
|
D:SER42
|
4.0
|
48.0
|
1.0
|
|
OG
|
D:SER25
|
4.1
|
44.7
|
1.0
|
|
OG
|
D:SER42
|
4.2
|
54.1
|
0.5
|
|
O3B
|
D:GDP202
|
4.2
|
48.9
|
1.0
|
|
N
|
D:ALA68
|
4.4
|
45.2
|
1.0
|
|
O
|
D:THR67
|
4.4
|
45.7
|
1.0
|
|
NZ
|
D:LYS24
|
4.4
|
42.7
|
1.0
|
|
O
|
D:HOH333
|
4.5
|
63.2
|
1.0
|
|
O1A
|
D:GDP202
|
4.5
|
49.1
|
1.0
|
|
O3A
|
D:GDP202
|
4.5
|
49.2
|
1.0
|
|
CB
|
D:SER42
|
4.6
|
56.9
|
0.5
|
|
CB
|
D:SER42
|
4.6
|
56.9
|
0.5
|
|
C
|
D:THR67
|
4.6
|
48.2
|
1.0
|
|
O
|
D:LYS41
|
4.6
|
52.5
|
1.0
|
|
OG
|
D:SER20
|
4.8
|
70.1
|
1.0
|
|
N
|
D:GLY69
|
4.8
|
48.5
|
1.0
|
|
CE
|
D:LYS24
|
4.8
|
45.8
|
1.0
|
|
C
|
D:ALA68
|
4.8
|
53.0
|
1.0
|
|
CG2
|
D:THR43
|
5.0
|
45.9
|
1.0
|
|
Fluorine binding site 7 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 7 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:F203
b:40.1
occ:0.30
|
F1
|
I:BEF203
|
0.0
|
40.1
|
0.3
|
|
BE
|
I:BEF203
|
1.4
|
41.9
|
0.3
|
|
F3
|
I:BEF203
|
2.2
|
40.8
|
0.3
|
|
F2
|
I:BEF203
|
2.2
|
40.2
|
0.3
|
|
O3B
|
I:GDP202
|
2.4
|
45.8
|
0.3
|
|
NZ
|
I:LYS24
|
2.8
|
41.4
|
0.3
|
|
N
|
I:GLY69
|
3.0
|
48.4
|
0.3
|
|
CA
|
I:ALA68
|
3.3
|
48.6
|
0.3
|
|
CA
|
I:SER20
|
3.4
|
50.5
|
0.3
|
|
PB
|
I:GDP202
|
3.5
|
45.6
|
0.3
|
|
CE
|
I:LYS24
|
3.5
|
37.8
|
0.3
|
|
O2B
|
I:GDP202
|
3.6
|
44.0
|
0.3
|
|
C
|
I:ALA68
|
3.6
|
50.1
|
0.3
|
|
OG
|
I:SER20
|
3.7
|
50.0
|
0.3
|
|
O
|
I:HOH303
|
3.8
|
88.1
|
1.0
|
|
CB
|
I:SER20
|
3.8
|
48.9
|
0.3
|
|
CB
|
I:ALA68
|
3.8
|
50.1
|
0.3
|
|
O1B
|
I:GDP202
|
3.9
|
48.1
|
0.3
|
|
MG
|
I:MG201
|
4.0
|
42.1
|
0.3
|
|
N
|
I:GLY21
|
4.0
|
49.4
|
0.3
|
|
CA
|
I:GLY69
|
4.1
|
48.7
|
0.3
|
|
O
|
I:THR67
|
4.2
|
55.1
|
0.3
|
|
O
|
I:ASP19
|
4.2
|
51.3
|
0.3
|
|
N
|
I:SER20
|
4.3
|
49.7
|
0.3
|
|
C
|
I:SER20
|
4.3
|
51.0
|
0.3
|
|
N
|
I:ALA68
|
4.4
|
42.7
|
0.3
|
|
C
|
I:ASP19
|
4.5
|
49.0
|
0.3
|
|
C
|
I:THR67
|
4.7
|
46.0
|
0.3
|
|
OG
|
I:SER42
|
4.8
|
59.0
|
0.3
|
|
O
|
I:ALA68
|
4.8
|
35.4
|
0.3
|
|
O3A
|
I:GDP202
|
4.9
|
54.1
|
0.3
|
|
N
|
I:THR43
|
5.0
|
47.9
|
0.3
|
|
CD
|
I:LYS24
|
5.0
|
41.4
|
0.3
|
|
Fluorine binding site 8 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 8 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:F203
b:40.2
occ:0.30
|
F2
|
I:BEF203
|
0.0
|
40.2
|
0.3
|
|
BE
|
I:BEF203
|
1.4
|
41.9
|
0.3
|
|
F3
|
I:BEF203
|
2.2
|
40.8
|
0.3
|
|
F1
|
I:BEF203
|
2.2
|
40.1
|
0.3
|
|
O3B
|
I:GDP202
|
2.5
|
45.8
|
0.3
|
|
OG
|
I:SER42
|
3.0
|
59.0
|
0.3
|
|
CA
|
I:SER42
|
3.4
|
52.5
|
0.3
|
|
CB
|
I:SER42
|
3.5
|
55.2
|
0.3
|
|
CB
|
I:SER20
|
3.6
|
48.9
|
0.3
|
|
O
|
I:HOH307
|
3.7
|
91.8
|
1.0
|
|
N
|
I:THR43
|
3.8
|
47.9
|
0.3
|
|
CA
|
I:SER20
|
3.8
|
50.5
|
0.3
|
|
OG
|
I:SER20
|
3.9
|
50.0
|
0.3
|
|
PB
|
I:GDP202
|
3.9
|
45.6
|
0.3
|
|
CB
|
I:ALA68
|
4.0
|
50.1
|
0.3
|
|
N
|
I:GLY21
|
4.0
|
49.4
|
0.3
|
|
MG
|
I:MG201
|
4.0
|
42.1
|
0.3
|
|
C
|
I:SER42
|
4.1
|
47.9
|
0.3
|
|
CA
|
I:ALA68
|
4.3
|
48.6
|
0.3
|
|
C
|
I:SER20
|
4.3
|
51.0
|
0.3
|
|
O1B
|
I:GDP202
|
4.4
|
48.1
|
0.3
|
|
O
|
I:HOH301
|
4.5
|
56.8
|
1.0
|
|
N
|
I:SER42
|
4.6
|
50.7
|
0.3
|
|
N
|
I:GLY69
|
4.6
|
48.4
|
0.3
|
|
O2B
|
I:GDP202
|
4.8
|
44.0
|
0.3
|
|
O3A
|
I:GDP202
|
4.8
|
54.1
|
0.3
|
|
O
|
I:HOH303
|
4.8
|
88.1
|
1.0
|
|
NZ
|
I:LYS24
|
4.9
|
41.4
|
0.3
|
|
CA
|
I:THR43
|
5.0
|
47.3
|
0.3
|
|
CA
|
I:GLY21
|
5.0
|
45.8
|
0.3
|
|
C
|
I:ALA68
|
5.0
|
50.1
|
0.3
|
|
Fluorine binding site 9 out
of 9 in 5jcz
Go back to
Fluorine Binding Sites List in 5jcz
Fluorine binding site 9 out
of 9 in the RAB11 Bound to Myova-Gtd
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of RAB11 Bound to Myova-Gtd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:F203
b:40.8
occ:0.30
|
F3
|
I:BEF203
|
0.0
|
40.8
|
0.3
|
|
BE
|
I:BEF203
|
1.4
|
41.9
|
0.3
|
|
MG
|
I:MG201
|
2.1
|
42.1
|
0.3
|
|
F1
|
I:BEF203
|
2.2
|
40.1
|
0.3
|
|
F2
|
I:BEF203
|
2.2
|
40.2
|
0.3
|
|
O3B
|
I:GDP202
|
2.6
|
45.8
|
0.3
|
|
O
|
I:HOH303
|
2.7
|
88.1
|
1.0
|
|
OG1
|
I:THR43
|
3.0
|
43.1
|
0.3
|
|
N
|
I:THR43
|
3.0
|
47.9
|
0.3
|
|
O1B
|
I:GDP202
|
3.1
|
48.1
|
0.3
|
|
CB
|
I:THR43
|
3.3
|
44.3
|
0.3
|
|
O
|
I:HOH301
|
3.3
|
56.8
|
1.0
|
|
PB
|
I:GDP202
|
3.4
|
45.6
|
0.3
|
|
CA
|
I:ALA68
|
3.5
|
48.6
|
0.3
|
|
CB
|
I:ALA68
|
3.7
|
50.1
|
0.3
|
|
CA
|
I:THR43
|
3.7
|
47.3
|
0.3
|
|
C
|
I:SER42
|
4.0
|
47.9
|
0.3
|
|
CA
|
I:SER42
|
4.1
|
52.5
|
0.3
|
|
N
|
I:ALA68
|
4.1
|
42.7
|
0.3
|
|
OG
|
I:SER42
|
4.1
|
59.0
|
0.3
|
|
OG
|
I:SER25
|
4.1
|
40.0
|
0.3
|
|
O2B
|
I:GDP202
|
4.3
|
44.0
|
0.3
|
|
O
|
I:THR67
|
4.3
|
55.1
|
0.3
|
|
NZ
|
I:LYS24
|
4.4
|
41.4
|
0.3
|
|
C
|
I:THR67
|
4.5
|
46.0
|
0.3
|
|
C
|
I:ALA68
|
4.6
|
50.1
|
0.3
|
|
N
|
I:GLY69
|
4.6
|
48.4
|
0.3
|
|
O
|
I:HOH307
|
4.6
|
91.8
|
1.0
|
|
CE
|
I:LYS24
|
4.6
|
37.8
|
0.3
|
|
CB
|
I:SER42
|
4.7
|
55.2
|
0.3
|
|
CG2
|
I:THR43
|
4.7
|
45.4
|
0.3
|
|
O2A
|
I:GDP202
|
4.7
|
53.8
|
0.3
|
|
O3A
|
I:GDP202
|
4.7
|
54.1
|
0.3
|
|
O
|
I:THR43
|
4.8
|
35.9
|
0.3
|
|
C
|
I:THR43
|
4.8
|
42.4
|
0.3
|
|
O
|
I:LYS41
|
4.8
|
50.0
|
0.3
|
|
Reference:
O.Pylypenko,
T.Welz,
J.Tittel,
M.Kollmar,
F.Chardon,
G.Malherbe,
S.Weiss,
C.I.Michel,
A.Samol-Wolf,
A.T.Grasskamp,
A.Hume,
B.Goud,
B.Baron,
P.England,
M.A.Titus,
P.Schwille,
T.Weidemann,
A.Houdusse,
E.Kerkhoff.
Coordinated Recruitment of Spir Actin Nucleators and Myosin V Motors to RAB11 Vesicle Membranes. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27623148
DOI: 10.7554/ELIFE.17523
Page generated: Tue Jul 15 04:21:34 2025
|
