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Fluorine in PDB 5jrs: Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide

Enzymatic activity of Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide

All present enzymatic activity of Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide, PDB code: 5jrs was solved by J.K.Muckelbauer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.20 / 1.97
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.470, 45.480, 98.350, 90.00, 93.95, 90.00
R / Rfree (%) 20.2 / 22.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide (pdb code 5jrs). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide, PDB code: 5jrs:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 5jrs

Go back to Fluorine Binding Sites List in 5jrs
Fluorine binding site 1 out of 2 in the Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F4000

b:25.8
occ:1.00
F27 A:6MV4000 0.0 25.8 1.0
C25 A:6MV4000 1.3 25.1 1.0
C26 A:6MV4000 2.4 24.5 1.0
C24 A:6MV4000 2.4 28.5 1.0
HB2 A:CYS481 2.4 33.7 1.0
N28 A:6MV4000 2.8 31.0 1.0
C3 A:6MV4000 2.9 25.4 1.0
H1 A:6MV4000 2.9 24.2 1.0
O38 A:6MV4000 3.1 36.9 1.0
C33 A:6MV4000 3.2 33.5 1.0
H A:CYS481 3.2 24.3 1.0
C2 A:6MV4000 3.2 24.7 1.0
HD21 A:LEU528 3.2 31.5 1.0
C13 A:6MV4000 3.3 25.2 1.0
C9 A:6MV4000 3.4 22.5 1.0
CB A:CYS481 3.5 32.3 1.0
C21 A:6MV4000 3.6 25.1 1.0
HD23 A:LEU528 3.7 31.6 1.0
N A:CYS481 3.7 25.6 1.0
C23 A:6MV4000 3.7 27.7 1.0
C29 A:6MV4000 3.7 34.5 1.0
CD2 A:LEU528 3.8 31.6 1.0
HD22 A:LEU528 3.8 31.2 1.0
C4 A:6MV4000 3.8 26.5 1.0
HA A:CYS481 3.9 26.9 1.0
O A:HOH4165 3.9 29.7 1.0
CA A:CYS481 3.9 28.4 1.0
H17 A:6MV4000 4.0 34.8 1.0
HB3 A:CYS481 4.1 31.8 1.0
C22 A:6MV4000 4.1 28.6 1.0
HG A:CYS481 4.1 38.9 1.0
H10 A:6MV4000 4.2 26.2 1.0
HA2 A:GLY480 4.3 19.9 1.0
C32 A:6MV4000 4.3 35.6 1.0
C1 A:6MV4000 4.4 22.2 1.0
C12 A:6MV4000 4.4 24.5 1.0
C A:GLY480 4.5 26.9 1.0
HA3 A:GLY480 4.5 19.5 1.0
H7 A:6MV4000 4.5 23.4 1.0
SG A:CYS481 4.5 38.6 1.0
C8 A:6MV4000 4.5 23.7 1.0
H32 A:6MV4000 4.6 26.4 1.0
N30 A:6MV4000 4.7 36.1 1.0
CA A:GLY480 4.7 20.3 1.0
H8 A:6MV4000 4.8 25.0 1.0
C5 A:6MV4000 4.8 20.7 1.0
C31 A:6MV4000 4.9 35.9 1.0
N7 A:6MV4000 5.0 24.8 1.0

Fluorine binding site 2 out of 2 in 5jrs

Go back to Fluorine Binding Sites List in 5jrs
Fluorine binding site 2 out of 2 in the Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Bruton Agammaglobulinemia Tyrosine Kinase Complexed with 4-[2-Fluoro-3-(4-Oxo -3,4-Dihydroquinazolin-3-Yl) Phenyl]-7-(2-Hydroxypropan-2-Y L)-9H-Carbazole-1-Carboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F4000

b:29.1
occ:1.00
F27 B:6MV4000 0.0 29.1 1.0
C25 B:6MV4000 1.3 30.9 1.0
C26 B:6MV4000 2.4 30.5 1.0
C24 B:6MV4000 2.4 35.6 1.0
HB2 B:CYS481 2.5 28.4 1.0
N28 B:6MV4000 2.8 35.6 1.0
C3 B:6MV4000 2.9 30.1 1.0
H1 B:6MV4000 2.9 26.9 1.0
O38 B:6MV4000 3.1 39.5 1.0
H B:CYS481 3.1 25.9 1.0
C33 B:6MV4000 3.2 38.3 1.0
HD21 B:LEU528 3.2 29.8 1.0
C2 B:6MV4000 3.2 29.0 1.0
C13 B:6MV4000 3.3 27.1 1.0
C9 B:6MV4000 3.4 28.5 1.0
CB B:CYS481 3.5 28.2 1.0
N B:CYS481 3.6 26.4 1.0
C21 B:6MV4000 3.6 31.3 1.0
HD23 B:LEU528 3.6 29.9 1.0
C23 B:6MV4000 3.6 35.2 1.0
CD2 B:LEU528 3.7 29.5 1.0
C29 B:6MV4000 3.8 34.6 1.0
O B:HOH4142 3.8 24.3 1.0
HD22 B:LEU528 3.8 29.5 1.0
C4 B:6MV4000 3.8 25.2 1.0
HA B:CYS481 3.9 27.6 1.0
CA B:CYS481 3.9 26.4 1.0
H17 B:6MV4000 4.1 32.7 1.0
HB3 B:CYS481 4.1 28.6 1.0
C22 B:6MV4000 4.1 35.2 1.0
H10 B:6MV4000 4.2 24.7 1.0
HG B:CYS481 4.2 30.9 1.0
HA2 B:GLY480 4.3 22.8 1.0
C32 B:6MV4000 4.3 40.0 1.0
C1 B:6MV4000 4.3 28.1 1.0
C B:GLY480 4.4 27.3 1.0
HA3 B:GLY480 4.4 22.9 1.0
C12 B:6MV4000 4.4 28.0 1.0
H7 B:6MV4000 4.5 30.8 1.0
C8 B:6MV4000 4.5 28.1 1.0
H32 B:6MV4000 4.5 35.6 1.0
SG B:CYS481 4.6 31.8 1.0
CA B:GLY480 4.6 22.5 1.0
N30 B:6MV4000 4.7 38.2 1.0
H8 B:6MV4000 4.8 29.1 1.0
C5 B:6MV4000 4.8 24.0 1.0
C31 B:6MV4000 4.9 39.7 1.0
N7 B:6MV4000 5.0 28.1 1.0
O B:HOH4129 5.0 36.2 1.0

Reference:

G.V.De Lucca, Q.Shi, Q.Liu, D.G.Batt, M.Beaudoin Bertrand, R.Rampulla, A.Mathur, L.Discenza, C.D'arienzo, J.Dai, M.Obermeier, R.Vickery, Y.Zhang, Z.Yang, P.Marathe, A.J.Tebben, J.K.Muckelbauer, C.J.Chang, H.Zhang, K.Gillooly, T.Taylor, M.A.Pattoli, S.Skala, D.W.Kukral, K.W.Mcintyre, L.Salter-Cid, A.Fura, J.R.Burke, J.C.Barrish, P.H.Carter, J.A.Tino. Small Molecule Reversible Inhibitors of Bruton'S Tyrosine Kinase (Btk): Structure-Activity Relationships Leading to the Identification of 7-(2-Hydroxypropan-2-Yl)-4-[2-Methyl-3-(4-Oxo-3, 4-Dihydroquinazolin-3-Yl)Phenyl]-9H-Carbazole-1-Carboxamide (Bms-935177). J.Med.Chem. V. 59 7915 2016.
ISSN: ISSN 0022-2623
PubMed: 27531604
DOI: 10.1021/ACS.JMEDCHEM.6B00722
Page generated: Tue Jul 15 04:32:15 2025

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