Atomistry » Fluorine » PDB 5lck-5lz4 » 5lx5
Atomistry »
  Fluorine »
    PDB 5lck-5lz4 »
      5lx5 »

Fluorine in PDB 5lx5: Crystal Structure of Visfatin in Complex with SAR154782-Rp.

Enzymatic activity of Crystal Structure of Visfatin in Complex with SAR154782-Rp.

All present enzymatic activity of Crystal Structure of Visfatin in Complex with SAR154782-Rp.:
2.4.2.12;

Protein crystallography data

The structure of Crystal Structure of Visfatin in Complex with SAR154782-Rp., PDB code: 5lx5 was solved by T.Bertrand, J.P.Marquette, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.51 / 1.88
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.710, 106.690, 83.460, 90.00, 96.76, 90.00
R / Rfree (%) 16.3 / 19.6

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Visfatin in Complex with SAR154782-Rp. (pdb code 5lx5). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of Visfatin in Complex with SAR154782-Rp., PDB code: 5lx5:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 5lx5

Go back to Fluorine Binding Sites List in 5lx5
Fluorine binding site 1 out of 4 in the Crystal Structure of Visfatin in Complex with SAR154782-Rp.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Visfatin in Complex with SAR154782-Rp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:15.5
occ:0.80
F39 A:7A0501 0.0 15.5 0.8
F39 A:7A0501 0.3 16.1 0.2
C13 A:7A0501 1.3 15.7 0.2
C13 A:7A0501 1.4 13.2 0.8
C12 A:7A0501 2.3 14.9 0.2
C7 A:7A0501 2.4 15.8 0.2
C7 A:7A0501 2.4 10.2 0.8
C12 A:7A0501 2.4 11.8 0.8
N32 A:7A0501 2.7 10.2 0.8
N32 A:7A0501 2.7 13.0 0.2
CE1 A:HIS191 3.0 12.2 1.0
OG A:SER241 3.2 14.5 1.0
NE2 A:HIS191 3.2 12.9 1.0
O A:HOH831 3.2 9.6 1.0
OD1 A:ASP219 3.5 12.0 1.0
N A:VAL242 3.5 12.4 1.0
ND1 A:HIS191 3.5 12.6 1.0
C4 A:7A0501 3.6 15.4 0.2
C9 A:7A0501 3.6 16.8 0.2
C4 A:7A0501 3.6 10.7 0.8
C9 A:7A0501 3.6 11.5 0.8
CG2 A:VAL242 3.9 15.8 1.0
C18 A:7A0501 3.9 11.3 0.2
CA A:SER241 3.9 9.2 1.0
CD2 A:HIS191 3.9 13.5 1.0
C18 A:7A0501 4.0 10.6 0.8
C1 A:7A0501 4.0 15.9 0.2
CB A:SER241 4.1 10.4 1.0
C1 A:7A0501 4.1 10.5 0.8
CG A:HIS191 4.1 11.6 1.0
C A:SER241 4.2 14.3 1.0
CZ A:PHE193 4.2 5.2 0.2
O A:VAL242 4.2 13.8 1.0
N35 A:7A0501 4.4 9.2 0.2
CA A:VAL242 4.4 12.7 1.0
CE1 A:PHE193 4.5 6.3 0.2
CB A:VAL242 4.5 16.5 1.0
CG A:ASP219 4.6 11.2 1.0
N35 A:7A0501 4.6 12.3 0.8
O A:HOH872 4.6 17.3 1.0
CG1 A:VAL242 4.7 16.6 1.0
O38 A:7A0501 4.8 12.3 0.2
C A:VAL242 4.8 14.8 1.0
C14 A:7A0501 4.8 18.1 0.2
C14 A:7A0501 4.8 14.3 0.8
CE2 A:PHE193 4.9 21.4 0.8
O38 A:7A0501 4.9 11.3 0.8
O A:TYR240 4.9 12.2 1.0
C5 A:7A0501 5.0 16.4 0.8
OD2 A:ASP219 5.0 14.1 1.0
C5 A:7A0501 5.0 18.9 0.2

Fluorine binding site 2 out of 4 in 5lx5

Go back to Fluorine Binding Sites List in 5lx5
Fluorine binding site 2 out of 4 in the Crystal Structure of Visfatin in Complex with SAR154782-Rp.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Visfatin in Complex with SAR154782-Rp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:16.1
occ:0.20
F39 A:7A0501 0.0 16.1 0.2
F39 A:7A0501 0.3 15.5 0.8
C13 A:7A0501 1.3 15.7 0.2
C13 A:7A0501 1.4 13.2 0.8
C12 A:7A0501 2.3 14.9 0.2
C7 A:7A0501 2.4 15.8 0.2
C7 A:7A0501 2.4 10.2 0.8
C12 A:7A0501 2.4 11.8 0.8
N32 A:7A0501 2.7 13.0 0.2
N32 A:7A0501 2.7 10.2 0.8
OG A:SER241 3.1 14.5 1.0
O A:HOH831 3.1 9.6 1.0
CE1 A:HIS191 3.2 12.2 1.0
N A:VAL242 3.2 12.4 1.0
NE2 A:HIS191 3.5 12.9 1.0
CG2 A:VAL242 3.6 15.8 1.0
C4 A:7A0501 3.6 15.4 0.2
C9 A:7A0501 3.6 16.8 0.2
OD1 A:ASP219 3.6 12.0 1.0
C9 A:7A0501 3.6 11.5 0.8
C4 A:7A0501 3.7 10.7 0.8
CA A:SER241 3.8 9.2 1.0
ND1 A:HIS191 3.8 12.6 1.0
C A:SER241 3.9 14.3 1.0
O A:VAL242 3.9 13.8 1.0
CB A:SER241 3.9 10.4 1.0
C18 A:7A0501 4.0 11.3 0.2
C1 A:7A0501 4.1 15.9 0.2
C18 A:7A0501 4.1 10.6 0.8
C1 A:7A0501 4.1 10.5 0.8
CA A:VAL242 4.1 12.7 1.0
CB A:VAL242 4.2 16.5 1.0
CD2 A:HIS191 4.2 13.5 1.0
CG1 A:VAL242 4.4 16.6 1.0
CG A:HIS191 4.4 11.6 1.0
CZ A:PHE193 4.5 5.2 0.2
C A:VAL242 4.5 14.8 1.0
N35 A:7A0501 4.5 9.2 0.2
O A:HOH872 4.6 17.3 1.0
N35 A:7A0501 4.6 12.3 0.8
CG A:ASP219 4.7 11.2 1.0
CE1 A:PHE193 4.7 6.3 0.2
C14 A:7A0501 4.8 18.1 0.2
C14 A:7A0501 4.8 14.3 0.8
O38 A:7A0501 4.9 12.3 0.2
C5 A:7A0501 5.0 16.4 0.8
O A:TYR240 5.0 12.2 1.0
C5 A:7A0501 5.0 18.9 0.2
O38 A:7A0501 5.0 11.3 0.8

Fluorine binding site 3 out of 4 in 5lx5

Go back to Fluorine Binding Sites List in 5lx5
Fluorine binding site 3 out of 4 in the Crystal Structure of Visfatin in Complex with SAR154782-Rp.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Visfatin in Complex with SAR154782-Rp. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F501

b:14.7
occ:0.80
F39 B:7A0501 0.0 14.7 0.8
F39 B:7A0501 0.3 14.7 0.2
C13 B:7A0501 1.3 14.8 0.2
C13 B:7A0501 1.3 15.6 0.8
C12 B:7A0501 2.3 14.1 0.2
C7 B:7A0501 2.3 15.0 0.8
C7 B:7A0501 2.3 14.8 0.2
C12 B:7A0501 2.4 12.2 0.8
N32 B:7A0501 2.7 10.1 0.8
N32 B:7A0501 2.7 13.4 0.2
CE1 B:HIS191 3.0 13.5 1.0
OG B:SER241 3.2 14.8 1.0
NE2 B:HIS191 3.2 13.9 1.0
O B:HOH767 3.3 15.4 1.0
N B:VAL242 3.5 13.3 1.0
C4 B:7A0501 3.6 14.2 0.2
ND1 B:HIS191 3.6 14.3 1.0
C9 B:7A0501 3.6 15.4 0.2
C4 B:7A0501 3.6 12.3 0.8
C9 B:7A0501 3.6 15.7 0.8
OD1 B:ASP219 3.6 14.4 1.0
CA B:SER241 3.9 13.6 1.0
C18 B:7A0501 3.9 13.6 0.2
CD2 B:HIS191 3.9 14.8 1.0
CG2 B:VAL242 4.0 17.9 1.0
C18 B:7A0501 4.0 11.5 0.8
C1 B:7A0501 4.0 14.5 0.2
CB B:SER241 4.0 15.7 1.0
C1 B:7A0501 4.1 12.8 0.8
CG B:HIS191 4.1 13.7 1.0
C B:SER241 4.2 17.0 1.0
O B:VAL242 4.2 15.1 1.0
CZ B:PHE193 4.4 10.3 0.2
CA B:VAL242 4.4 12.8 1.0
N35 B:7A0501 4.4 12.5 0.2
O B:HOH840 4.5 19.8 1.0
CB B:VAL242 4.5 17.7 1.0
CE1 B:PHE193 4.5 11.5 0.2
N35 B:7A0501 4.6 9.8 0.8
CG1 B:VAL242 4.6 17.8 1.0
CG B:ASP219 4.6 13.7 1.0
C B:VAL242 4.8 15.9 1.0
O38 B:7A0501 4.8 13.7 0.2
C14 B:7A0501 4.8 16.2 0.2
C14 B:7A0501 4.8 18.7 0.8
CE2 B:PHE193 4.9 20.9 0.8
O38 B:7A0501 4.9 12.0 0.8
O B:TYR240 4.9 15.3 1.0
C5 B:7A0501 5.0 20.9 0.8
C5 B:7A0501 5.0 16.8 0.2

Fluorine binding site 4 out of 4 in 5lx5

Go back to Fluorine Binding Sites List in 5lx5
Fluorine binding site 4 out of 4 in the Crystal Structure of Visfatin in Complex with SAR154782-Rp.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Visfatin in Complex with SAR154782-Rp. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F501

b:14.7
occ:0.20
F39 B:7A0501 0.0 14.7 0.2
F39 B:7A0501 0.3 14.7 0.8
C13 B:7A0501 1.3 14.8 0.2
C13 B:7A0501 1.4 15.6 0.8
C12 B:7A0501 2.3 14.1 0.2
C7 B:7A0501 2.3 14.8 0.2
C7 B:7A0501 2.4 15.0 0.8
C12 B:7A0501 2.4 12.2 0.8
N32 B:7A0501 2.7 13.4 0.2
N32 B:7A0501 2.7 10.1 0.8
OG B:SER241 3.0 14.8 1.0
N B:VAL242 3.2 13.3 1.0
O B:HOH767 3.2 15.4 1.0
CE1 B:HIS191 3.3 13.5 1.0
NE2 B:HIS191 3.5 13.9 1.0
C4 B:7A0501 3.6 14.2 0.2
C9 B:7A0501 3.6 15.4 0.2
C9 B:7A0501 3.6 15.7 0.8
C4 B:7A0501 3.6 12.3 0.8
CG2 B:VAL242 3.7 17.9 1.0
OD1 B:ASP219 3.7 14.4 1.0
CA B:SER241 3.8 13.6 1.0
ND1 B:HIS191 3.9 14.3 1.0
O B:VAL242 3.9 15.1 1.0
C B:SER241 3.9 17.0 1.0
CB B:SER241 3.9 15.7 1.0
C18 B:7A0501 4.0 13.6 0.2
C1 B:7A0501 4.1 14.5 0.2
CA B:VAL242 4.1 12.8 1.0
C18 B:7A0501 4.1 11.5 0.8
C1 B:7A0501 4.1 12.8 0.8
CB B:VAL242 4.2 17.7 1.0
CD2 B:HIS191 4.2 14.8 1.0
CG1 B:VAL242 4.3 17.8 1.0
C B:VAL242 4.4 15.9 1.0
CG B:HIS191 4.4 13.7 1.0
N35 B:7A0501 4.5 12.5 0.2
O B:HOH840 4.5 19.8 1.0
N35 B:7A0501 4.7 9.8 0.8
CZ B:PHE193 4.7 10.3 0.2
CG B:ASP219 4.8 13.7 1.0
CE1 B:PHE193 4.8 11.5 0.2
C14 B:7A0501 4.8 16.2 0.2
C14 B:7A0501 4.8 18.7 0.8
O38 B:7A0501 4.9 13.7 0.2
C5 B:7A0501 5.0 20.9 0.8
O B:TYR240 5.0 15.3 1.0
C5 B:7A0501 5.0 16.8 0.2
O38 B:7A0501 5.0 12.0 0.8

Reference:

T.Bertrand, J.P.Marquette. Crystal Structure of Visfatin in Complex with SAR154782-Rp To Be Published.
Page generated: Thu Aug 1 11:33:03 2024

Last articles

Cl in 4FSB
Cl in 4FSJ
Cl in 4FS6
Cl in 4FSD
Cl in 4FMI
Cl in 4FMJ
Cl in 4FS5
Cl in 4FMH
Cl in 4FRS
Cl in 4FRJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy