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Fluorine in PDB 5o5t: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007, PDB code: 5o5t was solved by C.Barinka, Z.Novakova, L.Motlova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.38 / 1.43
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.657, 130.159, 159.160, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 17.3

Other elements in 5o5t:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Calcium (Ca) 1 atom
Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 (pdb code 5o5t). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007, PDB code: 5o5t:

Fluorine binding site 1 out of 1 in 5o5t

Go back to Fluorine Binding Sites List in 5o5t
Fluorine binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F819

b:35.9
occ:1.00
 FCV A:9OT819 0.0 35.9 1.0
CCS A:9OT819 1.2 30.4 1.0
NCR A:9OT819 2.1 31.3 1.0
CCT A:9OT819 2.2 32.4 1.0
O A:HOH990 3.2 33.6 1.0
CCQ A:9OT819 3.4 31.9 1.0
CCU A:9OT819 3.4 31.1 1.0
NE1 A:TRP541 3.5 36.0 1.0
CB A:ARG463 3.6 26.6 1.0
CG2 A:THR538 3.6 26.9 1.0
CG A:ARG463 3.6 26.8 1.0
O A:HOH921 3.8 27.8 1.0
O A:HOH981 3.9 28.1 1.0
CCP A:9OT819 3.9 31.3 1.0
CD1 A:TRP541 3.9 42.8 1.0
CE2 A:TRP541 4.0 43.4 1.0
CA A:ARG463 4.1 24.2 1.0
CD A:ARG463 4.1 26.2 1.0
OG1 A:THR538 4.4 28.4 1.0
CB A:THR538 4.4 26.3 1.0
O A:LEU462 4.4 27.4 1.0
CZ2 A:TRP541 4.5 39.3 1.0
OG A:SER501 4.6 35.5 1.0
CG A:TRP541 4.6 44.4 1.0
CD A:ARG511 4.7 34.5 1.0
CD2 A:TRP541 4.7 39.5 1.0
NE A:ARG463 4.8 29.8 1.0
N A:ARG463 4.9 23.6 1.0

Reference:

C.Barinka, Z.Novakova, L.Motlova. X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with A Urea Based Inhibitor Psma 1007 To Be Published.
Page generated: Tue Jul 15 05:37:45 2025

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