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Fluorine in PDB 5qbf: Crystal Structure of Endothiapepsin-FRG203 Complex

Enzymatic activity of Crystal Structure of Endothiapepsin-FRG203 Complex

All present enzymatic activity of Crystal Structure of Endothiapepsin-FRG203 Complex:
3.4.23.22;

Protein crystallography data

The structure of Crystal Structure of Endothiapepsin-FRG203 Complex, PDB code: 5qbf was solved by F.Huschmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.13 / 1.27
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.181, 73.002, 52.716, 90.00, 109.25, 90.00
R / Rfree (%) 13.6 / 16.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Endothiapepsin-FRG203 Complex (pdb code 5qbf). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of Endothiapepsin-FRG203 Complex, PDB code: 5qbf:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 5qbf

Go back to Fluorine Binding Sites List in 5qbf
Fluorine binding site 1 out of 2 in the Crystal Structure of Endothiapepsin-FRG203 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Endothiapepsin-FRG203 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F405

b:27.3
occ:0.70
F A:D8J405 0.0 27.3 0.7
C2 A:D8J405 1.4 27.1 0.7
C1 A:D8J405 2.3 27.0 0.7
C3 A:D8J405 2.3 26.9 0.7
CD1 A:ILE122 3.1 14.8 1.0
OD2 A:ASP119 3.2 26.2 0.6
CB A:ALA16 3.2 11.9 1.0
C4 A:D8J405 3.6 25.9 0.7
C A:D8J405 3.6 26.2 0.7
OD2 A:ASP119 3.6 25.5 0.4
CD1 A:ILE10 3.9 14.4 1.0
O A:HOH506 3.9 46.6 1.0
C5 A:D8J405 4.1 25.4 0.7
O A:HOH512 4.3 14.9 1.0
OD2 A:ASP33 4.4 12.2 1.0
CG A:ASP119 4.4 24.3 0.6
CG A:ASP119 4.4 24.7 0.4
O A:ASP15 4.5 13.4 1.0
CG1 A:ILE122 4.5 12.8 1.0
CA A:ALA16 4.6 11.4 1.0
C A:ASP15 4.8 13.0 1.0
N A:ALA16 4.8 11.5 1.0

Fluorine binding site 2 out of 2 in 5qbf

Go back to Fluorine Binding Sites List in 5qbf
Fluorine binding site 2 out of 2 in the Crystal Structure of Endothiapepsin-FRG203 Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Endothiapepsin-FRG203 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F406

b:22.4
occ:0.50
F A:D8J406 0.0 22.4 0.5
C2 A:D8J406 1.4 20.3 0.5
C3 A:D8J406 2.3 19.0 0.5
C1 A:D8J406 2.3 19.1 0.5
O A:HOH730 3.3 48.2 1.0
C4 A:D8J406 3.6 17.9 0.5
C A:D8J406 3.6 17.9 0.5
C5 A:D8J406 4.1 17.0 0.5
O A:HOH530 4.4 26.9 1.0
CB A:ASP81 4.7 30.7 1.0
C7 A:D8J405 4.8 22.9 0.7

Reference:

F.U.Huschmann, M.S.Weiss, U.Mueller, L.O.Haustedt, G.Klebe. Crystal Structure of Endothiapepsin To Be Published.
Page generated: Tue Jul 15 06:11:27 2025

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