Atomistry » Fluorine » PDB 5qou-5qtr » 5qp4
Atomistry »
  Fluorine »
    PDB 5qou-5qtr »
      5qp4 »

Fluorine in PDB 5qp4: Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538:
3.6.1.62;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538, PDB code: 5qp4 was solved by E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.43 / 1.71
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.010, 60.470, 65.380, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.9

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538 (pdb code 5qp4). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538, PDB code: 5qp4:

Fluorine binding site 1 out of 1 in 5qp4

Go back to Fluorine Binding Sites List in 5qp4
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of DCP2 (NUDT20) in Complex with Z450133538 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F306

b:50.9
occ:0.41
 F1 A:LH7306 0.0 50.9 0.4
C14 A:LH7306 1.4 56.6 0.4
C15 A:LH7306 2.3 56.0 0.4
C13 A:LH7306 2.3 59.0 0.4
O A:HOH449 3.1 49.3 1.0
OE2 A:GLU148 3.3 44.7 1.0
CD A:GLU148 3.4 37.9 1.0
C16 A:LH7306 3.6 57.8 0.4
C12 A:LH7306 3.6 58.5 0.4
CD1 A:ILE194 3.7 27.6 1.0
NZ A:LYS121 3.8 40.9 0.4
OE1 A:GLU193 3.8 46.8 0.4
OE1 A:GLU148 3.8 33.7 1.0
CG A:GLU148 3.9 33.1 1.0
C11 A:LH7306 4.1 59.9 0.4
CD A:LYS121 4.3 40.0 0.4
CB A:GLU193 4.4 37.0 0.4
O A:HOH404 4.5 48.0 1.0
CE A:LYS121 4.6 40.8 0.4
CG1 A:ILE194 4.7 29.5 1.0
O A:GLU193 4.8 32.1 0.4
O A:LYS128 4.8 30.8 1.0
CD A:GLU193 4.9 44.3 0.4

Reference:

E.R.Nelson, S.Velupillai, R.Talon, P.M.Collins, T.Krojer, D.Wang, J.Brandao-Neto, A.Douangamath, N.Burgess-Brown, C.H.Arrowsmith, C.Bountra, K.Huber, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Tue Jul 15 06:28:32 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy