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Fluorine in PDB 5qyf: Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A, PDB code: 5qyf was solved by M.S.Weiss, J.Wollenhaupt, A.Metz, T.Barthel, G.M.A.Lima, A.Heine, U.Mueller, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.61 / 1.49
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 88.215, 81.984, 93.727, 90.00, 108.48, 90.00
R / Rfree (%) 22.2 / 22.3

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A (pdb code 5qyf). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A, PDB code: 5qyf:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Fluorine binding site 1 out of 9 in 5qyf

Go back to Fluorine Binding Sites List in 5qyf
Fluorine binding site 1 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:25.9
occ:0.14
 F2 B:T9Y401 0.0 25.9 0.1
F2 B:T9Y401 0.0 25.9 0.1
F2 B:T9Y401 0.3 24.1 0.1
C6 B:T9Y401 1.3 26.0 0.1
C6 B:T9Y401 1.3 26.1 0.1
C6 B:T9Y401 1.3 24.4 0.1
O B:HOH545 1.9 27.5 0.2
F1 B:T9Y401 2.0 23.4 0.1
F1 B:T9Y401 2.1 25.5 0.1
F1 B:T9Y401 2.1 25.4 0.1
F B:T9Y401 2.2 26.0 0.1
F B:T9Y401 2.2 25.9 0.1
F B:T9Y401 2.3 23.8 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.4 24.6 0.1
O B:HOH559 2.6 33.0 0.2
O B:T9Y401 2.9 26.0 0.1
CA B:GLU223 2.9 24.9 0.1
CA B:GLU223 2.9 26.0 0.1
CA B:GLU223 2.9 25.9 0.1
O B:T9Y401 3.0 27.0 0.1
CA B:GLU223 3.0 25.9 0.2
CA B:GLU223 3.0 26.4 0.2
CA B:GLU223 3.0 25.1 0.2
O B:T9Y401 3.0 26.8 0.1
N B:GLU223 3.1 25.3 0.1
O B:HOH559 3.1 22.9 0.2
CD1 B:ILE129 3.1 28.5 0.2
CD1 B:ILE129 3.1 28.2 0.2
CD1 B:ILE129 3.1 30.2 0.2
N B:GLU223 3.1 26.4 0.2
N B:GLU223 3.1 25.9 0.2
C3 B:T9Y401 3.2 25.6 0.1
N B:GLU223 3.2 27.2 0.2
N B:GLU223 3.2 26.7 0.1
N B:GLU223 3.2 26.8 0.1
C3 B:T9Y401 3.2 25.9 0.1
C3 B:T9Y401 3.2 25.0 0.1
N1 B:T9Y401 3.2 24.6 0.1
N1 B:T9Y401 3.3 25.0 0.1
N1 B:T9Y401 3.3 24.3 0.1
O B:HOH545 3.5 29.8 0.2
C B:GLY222 3.5 26.9 0.2
C2 B:T9Y401 3.5 26.3 0.1
C2 B:T9Y401 3.5 26.0 0.1
C B:GLY222 3.5 25.1 0.2
C B:GLY222 3.5 26.8 0.1
C2 B:T9Y401 3.5 25.4 0.1
C B:GLY222 3.5 25.6 0.2
C B:GLY222 3.5 26.7 0.1
CD1 B:ILE129 3.5 35.0 0.1
CD1 B:ILE129 3.5 36.4 0.1
CD1 B:ILE129 3.5 39.7 0.1
C B:GLY222 3.5 25.3 0.1
O B:GLY222 3.6 29.8 0.2
O B:GLY222 3.6 29.0 0.1
O B:GLY222 3.6 29.4 0.1
CB B:GLU223 3.6 26.1 0.1
CB B:GLU223 3.6 25.9 0.1
O B:GLY222 3.6 27.5 0.2
O B:GLY222 3.6 28.0 0.2
CB B:GLU223 3.6 24.6 0.1
CB B:PHE226 3.6 21.7 0.1
CB B:PHE226 3.6 22.3 0.1
CB B:PHE226 3.6 21.6 0.1
O B:GLY222 3.6 26.6 0.1
CB B:GLU223 3.7 26.8 0.2
CB B:GLU223 3.7 26.8 0.2
CB B:GLU223 3.7 25.8 0.2
CB B:PHE226 3.7 21.0 0.2
CB B:PHE226 3.7 21.1 0.2
CB B:PHE226 3.7 21.3 0.2
CD2 B:PHE226 3.8 22.1 0.1
CD2 B:PHE226 3.9 22.1 0.1
CD2 B:PHE226 3.9 22.6 0.1
CG B:PHE226 4.0 21.9 0.1
CG B:PHE226 4.0 21.9 0.1
CG B:PHE226 4.0 22.5 0.1
O B:HOH559 4.1 28.6 0.2
C1 B:T9Y401 4.1 26.3 0.1
C B:GLU223 4.2 25.1 0.2
C B:GLU223 4.2 26.4 0.2
CG B:GLU223 4.2 24.9 0.2
C B:GLU223 4.2 26.0 0.1
C B:GLU223 4.2 25.8 0.2
C B:GLU223 4.2 26.1 0.1
C B:GLU223 4.2 24.9 0.1
CG B:GLU223 4.2 25.2 0.1
C1 B:T9Y401 4.2 27.4 0.1
CG B:GLU223 4.2 25.1 0.1
CG B:GLU223 4.2 26.3 0.2
CD2 B:PHE226 4.2 22.7 0.2
CB B:LYS125 4.2 34.8 0.2
CB B:LYS125 4.2 34.4 0.2
CG B:GLU223 4.2 26.0 0.2
CB B:LYS125 4.2 35.5 0.2
C1 B:T9Y401 4.2 27.3 0.1
CD2 B:PHE226 4.2 22.4 0.2
CD2 B:PHE226 4.2 22.0 0.2
CG B:PHE226 4.2 21.6 0.2
CG B:PHE226 4.2 22.2 0.2
CG B:PHE226 4.2 21.9 0.2
CG B:GLU223 4.2 23.9 0.1
C4 B:T9Y401 4.3 25.3 0.1
C4 B:T9Y401 4.3 25.6 0.1
N B:T9Y401 4.3 25.8 0.1
N B:T9Y401 4.3 26.0 0.1
O B:GLU223 4.4 30.5 0.2
C4 B:T9Y401 4.4 24.9 0.1
O B:GLU223 4.4 32.5 0.2
CA B:GLY222 4.4 26.1 0.2
O B:GLU223 4.4 31.5 0.2
N B:T9Y401 4.4 25.0 0.1
CA B:GLY222 4.4 26.7 0.2
CA B:GLY222 4.4 25.8 0.2
CA B:GLY222 4.4 25.5 0.1
O B:GLU223 4.4 31.6 0.1
O B:GLU223 4.4 30.8 0.1
CA B:GLY222 4.4 26.5 0.1
CA B:GLY222 4.4 26.6 0.1
O B:GLU223 4.4 26.9 0.1
CG1 B:ILE129 4.5 30.0 0.2
CG1 B:ILE129 4.5 28.2 0.2
CG1 B:ILE129 4.5 27.9 0.2
O B:HOH545 4.6 26.3 0.2
C B:LYS125 4.6 32.7 0.2
C B:LYS125 4.6 31.2 0.2
O B:LYS125 4.6 32.5 0.2
C B:LYS125 4.6 30.7 0.2
O B:LYS125 4.6 30.6 0.2
O B:LYS125 4.6 30.0 0.2
CG1 B:ILE129 4.7 39.6 0.1
O1 B:T9Y401 4.7 25.9 0.1
O1 B:T9Y401 4.7 25.5 0.1
CG1 B:ILE129 4.7 36.3 0.1
CG1 B:ILE129 4.7 35.0 0.1
O1 B:T9Y401 4.7 25.2 0.1
OE1 B:GLU223 4.8 25.1 0.2
N B:ILE126 4.8 29.0 0.2
N B:ILE126 4.8 29.4 0.2
N B:ILE126 4.8 31.1 0.2
CE2 B:PHE226 4.9 22.6 0.1
CE2 B:PHE226 4.9 22.6 0.1
OE1 B:GLU223 4.9 22.8 0.2
C B:T9Y401 4.9 26.4 0.1
CE2 B:PHE226 4.9 22.8 0.1
CD B:GLU223 5.0 26.4 0.2
O B:LYS125 5.0 42.8 0.1
C B:T9Y401 5.0 27.8 0.1
CA B:PHE226 5.0 22.2 0.1
O B:LYS125 5.0 41.4 0.1

Fluorine binding site 2 out of 9 in 5qyf

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Fluorine binding site 2 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:24.1
occ:0.06
 F2 B:T9Y401 0.0 24.1 0.1
F2 B:T9Y401 0.3 25.9 0.1
F2 B:T9Y401 0.3 25.9 0.1
C6 B:T9Y401 1.3 26.0 0.1
C6 B:T9Y401 1.3 26.1 0.1
C6 B:T9Y401 1.3 24.4 0.1
O B:HOH545 1.7 27.5 0.2
F B:T9Y401 2.0 26.0 0.1
F B:T9Y401 2.0 25.9 0.1
F1 B:T9Y401 2.2 23.4 0.1
F B:T9Y401 2.2 23.8 0.1
C5 B:T9Y401 2.2 25.6 0.1
C5 B:T9Y401 2.2 25.9 0.1
F1 B:T9Y401 2.3 25.4 0.1
F1 B:T9Y401 2.3 25.5 0.1
C5 B:T9Y401 2.3 24.6 0.1
O B:HOH559 2.7 33.0 0.2
CA B:GLU223 2.9 24.9 0.1
CA B:GLU223 2.9 26.0 0.1
CA B:GLU223 2.9 25.9 0.1
CA B:GLU223 2.9 25.9 0.2
CA B:GLU223 2.9 25.1 0.2
CA B:GLU223 2.9 26.4 0.2
N B:GLU223 3.0 25.3 0.1
N B:GLU223 3.0 26.4 0.2
N B:GLU223 3.0 25.9 0.2
N B:GLU223 3.0 26.7 0.1
N B:GLU223 3.1 27.2 0.2
N B:GLU223 3.1 26.8 0.1
N1 B:T9Y401 3.1 24.6 0.1
O B:T9Y401 3.1 26.0 0.1
N1 B:T9Y401 3.1 25.0 0.1
O B:HOH559 3.1 22.9 0.2
N1 B:T9Y401 3.1 24.3 0.1
O B:T9Y401 3.2 27.0 0.1
C3 B:T9Y401 3.2 25.6 0.1
C3 B:T9Y401 3.2 25.9 0.1
O B:T9Y401 3.2 26.8 0.1
C3 B:T9Y401 3.2 25.0 0.1
C B:GLY222 3.3 26.9 0.2
C B:GLY222 3.3 26.8 0.1
C B:GLY222 3.3 25.1 0.2
C B:GLY222 3.3 26.7 0.1
C B:GLY222 3.3 25.6 0.2
O B:HOH545 3.3 29.8 0.2
O B:GLY222 3.3 29.8 0.2
O B:GLY222 3.3 29.0 0.1
C B:GLY222 3.4 25.3 0.1
O B:GLY222 3.4 29.4 0.1
CD1 B:ILE129 3.4 28.5 0.2
CD1 B:ILE129 3.4 28.2 0.2
CD1 B:ILE129 3.4 30.2 0.2
O B:GLY222 3.4 27.5 0.2
O B:GLY222 3.4 28.0 0.2
O B:GLY222 3.4 26.6 0.1
CB B:PHE226 3.5 21.7 0.1
CB B:PHE226 3.5 21.6 0.1
CB B:PHE226 3.5 22.3 0.1
C2 B:T9Y401 3.6 26.3 0.1
C2 B:T9Y401 3.6 26.0 0.1
CB B:PHE226 3.6 21.0 0.2
CB B:PHE226 3.6 21.1 0.2
CB B:PHE226 3.6 21.3 0.2
C2 B:T9Y401 3.6 25.4 0.1
CB B:GLU223 3.7 26.1 0.1
CB B:GLU223 3.7 25.9 0.1
CB B:GLU223 3.7 24.6 0.1
CB B:GLU223 3.7 26.8 0.2
CB B:GLU223 3.7 26.8 0.2
CB B:GLU223 3.7 25.8 0.2
CD1 B:ILE129 3.8 35.0 0.1
CD1 B:ILE129 3.8 36.4 0.1
CD1 B:ILE129 3.8 39.7 0.1
CD2 B:PHE226 3.9 22.1 0.1
CD2 B:PHE226 3.9 22.1 0.1
CG B:PHE226 3.9 21.9 0.1
CD2 B:PHE226 4.0 22.6 0.1
CG B:PHE226 4.0 21.9 0.1
CG B:PHE226 4.0 22.5 0.1
C B:GLU223 4.1 25.1 0.2
C B:GLU223 4.1 26.0 0.1
C B:GLU223 4.1 26.1 0.1
C B:GLU223 4.1 26.4 0.2
C B:GLU223 4.1 25.8 0.2
C B:GLU223 4.1 24.9 0.1
CG B:PHE226 4.2 21.6 0.2
CG B:PHE226 4.2 22.2 0.2
CG B:PHE226 4.2 21.9 0.2
CA B:GLY222 4.2 26.1 0.2
CA B:GLY222 4.2 26.7 0.2
CA B:GLY222 4.2 25.8 0.2
CA B:GLY222 4.2 25.5 0.1
N B:T9Y401 4.2 25.8 0.1
CA B:GLY222 4.2 26.5 0.1
CA B:GLY222 4.2 26.6 0.1
CD2 B:PHE226 4.2 22.7 0.2
N B:T9Y401 4.2 26.0 0.1
C4 B:T9Y401 4.2 25.3 0.1
CD2 B:PHE226 4.2 22.4 0.2
CD2 B:PHE226 4.2 22.0 0.2
C4 B:T9Y401 4.2 25.6 0.1
N B:T9Y401 4.3 25.0 0.1
CB B:LYS125 4.3 34.8 0.2
CB B:LYS125 4.3 34.4 0.2
CB B:LYS125 4.3 35.5 0.2
O B:GLU223 4.3 30.5 0.2
O B:HOH559 4.3 28.6 0.2
CG B:GLU223 4.3 24.9 0.2
CG B:GLU223 4.3 25.2 0.1
C4 B:T9Y401 4.3 24.9 0.1
O B:GLU223 4.3 32.5 0.2
O B:GLU223 4.3 31.5 0.2
CG B:GLU223 4.3 25.1 0.1
CG B:GLU223 4.3 26.3 0.2
C1 B:T9Y401 4.3 26.3 0.1
CG B:GLU223 4.3 26.0 0.2
O B:GLU223 4.3 31.6 0.1
O B:GLU223 4.3 30.8 0.1
O B:GLU223 4.3 26.9 0.1
CG B:GLU223 4.4 23.9 0.1
C1 B:T9Y401 4.4 27.4 0.1
C1 B:T9Y401 4.4 27.3 0.1
O B:HOH545 4.5 26.3 0.2
CG1 B:ILE129 4.7 30.0 0.2
CG1 B:ILE129 4.7 28.2 0.2
CG1 B:ILE129 4.7 27.9 0.2
C B:LYS125 4.7 32.7 0.2
C B:LYS125 4.7 31.2 0.2
C B:LYS125 4.7 30.7 0.2
O1 B:T9Y401 4.8 25.9 0.1
O1 B:T9Y401 4.8 25.5 0.1
O1 B:T9Y401 4.8 25.2 0.1
O B:LYS125 4.8 32.5 0.2
O B:LYS125 4.8 30.6 0.2
O B:LYS125 4.8 30.0 0.2
CA B:PHE226 4.8 22.2 0.1
N B:ILE126 4.8 29.0 0.2
CA B:PHE226 4.8 21.6 0.1
CA B:PHE226 4.8 21.6 0.1
N B:ILE126 4.9 29.4 0.2
N B:ILE126 4.9 31.1 0.2
CG1 B:ILE129 4.9 39.6 0.1
CA B:PHE226 4.9 21.1 0.2
CE2 B:PHE226 4.9 22.6 0.1
CA B:PHE226 4.9 21.3 0.2
CG1 B:ILE129 4.9 36.3 0.1
CA B:PHE226 4.9 21.6 0.2
CG1 B:ILE129 4.9 35.0 0.1
CE2 B:PHE226 4.9 22.6 0.1
OE1 B:GLU223 5.0 25.1 0.2
CE2 B:PHE226 5.0 22.8 0.1

Fluorine binding site 3 out of 9 in 5qyf

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Fluorine binding site 3 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:25.9
occ:0.12
 F2 B:T9Y401 0.0 25.9 0.1
F2 B:T9Y401 0.0 25.9 0.1
F2 B:T9Y401 0.3 24.1 0.1
C6 B:T9Y401 1.3 26.0 0.1
C6 B:T9Y401 1.3 26.1 0.1
C6 B:T9Y401 1.3 24.4 0.1
O B:HOH545 1.9 27.5 0.2
F1 B:T9Y401 2.0 23.4 0.1
F1 B:T9Y401 2.2 25.5 0.1
F1 B:T9Y401 2.2 25.4 0.1
F B:T9Y401 2.2 26.0 0.1
F B:T9Y401 2.2 25.9 0.1
F B:T9Y401 2.3 23.8 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.3 24.6 0.1
O B:HOH559 2.6 33.0 0.2
O B:T9Y401 2.9 26.0 0.1
CA B:GLU223 2.9 24.9 0.1
CA B:GLU223 2.9 26.0 0.1
CA B:GLU223 2.9 25.9 0.1
O B:T9Y401 2.9 27.0 0.1
CA B:GLU223 3.0 25.9 0.2
CA B:GLU223 3.0 26.4 0.2
CA B:GLU223 3.0 25.1 0.2
O B:T9Y401 3.0 26.8 0.1
N B:GLU223 3.1 25.3 0.1
O B:HOH559 3.1 22.9 0.2
N B:GLU223 3.1 26.4 0.2
N B:GLU223 3.1 25.9 0.2
C3 B:T9Y401 3.1 25.6 0.1
CD1 B:ILE129 3.1 28.5 0.2
CD1 B:ILE129 3.1 28.2 0.2
N B:GLU223 3.1 27.2 0.2
CD1 B:ILE129 3.1 30.2 0.2
N B:GLU223 3.1 26.7 0.1
N B:GLU223 3.1 26.8 0.1
C3 B:T9Y401 3.1 25.9 0.1
C3 B:T9Y401 3.2 25.0 0.1
N1 B:T9Y401 3.2 24.6 0.1
N1 B:T9Y401 3.3 25.0 0.1
N1 B:T9Y401 3.3 24.3 0.1
O B:HOH545 3.4 29.8 0.2
C2 B:T9Y401 3.4 26.3 0.1
C2 B:T9Y401 3.4 26.0 0.1
C B:GLY222 3.4 26.9 0.2
C2 B:T9Y401 3.5 25.4 0.1
C B:GLY222 3.5 25.1 0.2
C B:GLY222 3.5 26.8 0.1
C B:GLY222 3.5 25.6 0.2
C B:GLY222 3.5 26.7 0.1
CD1 B:ILE129 3.5 35.0 0.1
CD1 B:ILE129 3.5 36.4 0.1
C B:GLY222 3.5 25.3 0.1
O B:GLY222 3.5 29.8 0.2
CD1 B:ILE129 3.5 39.7 0.1
O B:GLY222 3.6 29.0 0.1
O B:GLY222 3.6 29.4 0.1
CB B:GLU223 3.6 26.1 0.1
CB B:GLU223 3.6 25.9 0.1
O B:GLY222 3.6 27.5 0.2
CB B:GLU223 3.6 24.6 0.1
O B:GLY222 3.6 28.0 0.2
O B:GLY222 3.6 26.6 0.1
CB B:PHE226 3.6 21.7 0.1
CB B:PHE226 3.6 22.3 0.1
CB B:PHE226 3.6 21.6 0.1
CB B:GLU223 3.6 26.8 0.2
CB B:GLU223 3.7 26.8 0.2
CB B:GLU223 3.7 25.8 0.2
CB B:PHE226 3.7 21.0 0.2
CB B:PHE226 3.7 21.1 0.2
CB B:PHE226 3.7 21.3 0.2
CD2 B:PHE226 3.9 22.1 0.1
CD2 B:PHE226 3.9 22.1 0.1
CD2 B:PHE226 3.9 22.6 0.1
CG B:PHE226 4.0 21.9 0.1
CG B:PHE226 4.0 21.9 0.1
CG B:PHE226 4.1 22.5 0.1
O B:HOH559 4.1 28.6 0.2
C1 B:T9Y401 4.1 26.3 0.1
C B:GLU223 4.2 25.1 0.2
C B:GLU223 4.2 26.4 0.2
CG B:GLU223 4.2 24.9 0.2
C B:GLU223 4.2 26.0 0.1
C B:GLU223 4.2 25.8 0.2
C B:GLU223 4.2 26.1 0.1
C1 B:T9Y401 4.2 27.4 0.1
C B:GLU223 4.2 24.9 0.1
CG B:GLU223 4.2 25.2 0.1
CG B:GLU223 4.2 25.1 0.1
CG B:GLU223 4.2 26.3 0.2
CB B:LYS125 4.2 34.8 0.2
CB B:LYS125 4.2 34.4 0.2
CG B:GLU223 4.2 26.0 0.2
CB B:LYS125 4.2 35.5 0.2
C1 B:T9Y401 4.2 27.3 0.1
CD2 B:PHE226 4.2 22.7 0.2
CG B:GLU223 4.2 23.9 0.1
CD2 B:PHE226 4.2 22.4 0.2
CG B:PHE226 4.2 21.6 0.2
CD2 B:PHE226 4.2 22.0 0.2
CG B:PHE226 4.2 22.2 0.2
CG B:PHE226 4.3 21.9 0.2
C4 B:T9Y401 4.3 25.3 0.1
C4 B:T9Y401 4.3 25.6 0.1
N B:T9Y401 4.3 25.8 0.1
N B:T9Y401 4.3 26.0 0.1
C4 B:T9Y401 4.3 24.9 0.1
CA B:GLY222 4.4 26.1 0.2
O B:GLU223 4.4 30.5 0.2
N B:T9Y401 4.4 25.0 0.1
CA B:GLY222 4.4 26.7 0.2
CA B:GLY222 4.4 25.8 0.2
O B:GLU223 4.4 32.5 0.2
CA B:GLY222 4.4 25.5 0.1
O B:GLU223 4.4 31.5 0.2
CA B:GLY222 4.4 26.5 0.1
CA B:GLY222 4.4 26.6 0.1
O B:GLU223 4.4 31.6 0.1
O B:GLU223 4.4 30.8 0.1
O B:GLU223 4.4 26.9 0.1
CG1 B:ILE129 4.5 30.0 0.2
CG1 B:ILE129 4.5 28.2 0.2
CG1 B:ILE129 4.5 27.9 0.2
O B:HOH545 4.6 26.3 0.2
C B:LYS125 4.6 32.7 0.2
C B:LYS125 4.6 31.2 0.2
O B:LYS125 4.6 32.5 0.2
C B:LYS125 4.6 30.7 0.2
O B:LYS125 4.6 30.6 0.2
O1 B:T9Y401 4.6 25.9 0.1
O1 B:T9Y401 4.6 25.5 0.1
O B:LYS125 4.7 30.0 0.2
O1 B:T9Y401 4.7 25.2 0.1
CG1 B:ILE129 4.7 39.6 0.1
CG1 B:ILE129 4.7 36.3 0.1
CG1 B:ILE129 4.7 35.0 0.1
OE1 B:GLU223 4.7 25.1 0.2
N B:ILE126 4.8 29.0 0.2
N B:ILE126 4.8 29.4 0.2
N B:ILE126 4.8 31.1 0.2
OE1 B:GLU223 4.9 22.8 0.2
CE2 B:PHE226 4.9 22.6 0.1
CE2 B:PHE226 4.9 22.6 0.1
C B:T9Y401 4.9 26.4 0.1
CE2 B:PHE226 5.0 22.8 0.1
CD B:GLU223 5.0 26.4 0.2
O B:LYS125 5.0 42.8 0.1
O B:ASN219 5.0 29.4 0.2
O B:ASN219 5.0 31.1 0.2
C B:T9Y401 5.0 27.8 0.1
O B:ASN219 5.0 30.1 0.2

Fluorine binding site 4 out of 9 in 5qyf

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Fluorine binding site 4 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:25.9
occ:0.14
 F B:T9Y401 0.0 25.9 0.1
F B:T9Y401 0.0 26.0 0.1
F B:T9Y401 0.5 23.8 0.1
C6 B:T9Y401 1.3 26.0 0.1
C6 B:T9Y401 1.3 26.1 0.1
O B:HOH545 1.4 27.5 0.2
C6 B:T9Y401 1.5 24.4 0.1
F2 B:T9Y401 2.0 24.1 0.1
F1 B:T9Y401 2.2 25.4 0.1
F1 B:T9Y401 2.2 25.5 0.1
F2 B:T9Y401 2.2 25.9 0.1
F2 B:T9Y401 2.2 25.9 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.4 24.6 0.1
N1 B:T9Y401 2.4 24.6 0.1
N1 B:T9Y401 2.5 25.0 0.1
F1 B:T9Y401 2.5 23.4 0.1
N1 B:T9Y401 2.5 24.3 0.1
O B:HOH545 2.7 29.8 0.2
CG1 B:ILE126 3.3 29.2 0.2
CG1 B:ILE126 3.3 27.3 0.2
CG1 B:ILE126 3.3 27.4 0.2
CG1 B:ILE126 3.4 36.8 0.1
CG1 B:ILE126 3.4 38.4 0.1
CG1 B:ILE126 3.4 40.1 0.1
CG1 B:VAL121 3.4 25.4 0.2
CG1 B:VAL121 3.5 24.9 0.2
CG1 B:VAL121 3.5 26.6 0.2
O B:GLN122 3.6 33.6 0.2
O B:GLN122 3.6 30.8 0.2
O B:GLN122 3.6 31.4 0.2
C3 B:T9Y401 3.7 25.6 0.1
C3 B:T9Y401 3.7 25.9 0.1
CB B:PHE226 3.7 21.7 0.1
CB B:PHE226 3.7 21.6 0.1
CB B:PHE226 3.7 22.3 0.1
O B:GLN122 3.7 35.0 0.1
N B:ILE126 3.7 29.0 0.2
CG1 B:VAL121 3.7 30.0 0.1
CG1 B:VAL121 3.7 27.2 0.1
N B:ILE126 3.7 29.4 0.2
O B:GLN122 3.7 37.1 0.1
CG1 B:VAL121 3.7 25.4 0.1
O B:GLN122 3.7 32.2 0.1
CB B:PHE226 3.7 21.0 0.2
C3 B:T9Y401 3.7 25.0 0.1
N B:ILE126 3.7 31.1 0.2
CB B:PHE226 3.7 21.1 0.2
CB B:PHE226 3.8 21.3 0.2
O B:HOH545 3.8 26.3 0.2
CB B:LYS125 3.8 34.8 0.2
CB B:LYS125 3.8 34.4 0.2
CB B:LYS125 3.8 35.5 0.2
CG B:PHE226 3.8 21.9 0.1
CG B:PHE226 3.8 21.9 0.1
O B:HOH559 3.8 33.0 0.2
N B:T9Y401 3.8 25.8 0.1
CG B:PHE226 3.8 22.5 0.1
N B:T9Y401 3.9 26.0 0.1
N B:T9Y401 3.9 25.0 0.1
CG B:PHE226 4.0 21.6 0.2
CG B:PHE226 4.0 22.2 0.2
CG B:PHE226 4.0 21.9 0.2
N B:GLN122 4.0 30.6 0.2
N B:GLN122 4.0 28.9 0.2
N B:GLN122 4.0 28.2 0.1
N B:GLN122 4.0 31.0 0.1
N B:GLN122 4.0 33.4 0.1
O B:HOH559 4.1 22.9 0.2
O B:GLY222 4.1 29.0 0.1
CD2 B:PHE226 4.1 22.1 0.1
C B:LYS125 4.1 32.7 0.2
O B:GLY222 4.1 29.4 0.1
C B:LYS125 4.1 31.2 0.2
C B:LYS125 4.1 30.7 0.2
O B:GLY222 4.1 26.6 0.1
CD2 B:PHE226 4.1 22.1 0.1
O B:GLY222 4.1 29.8 0.2
N B:ILE126 4.1 39.3 0.1
CA B:ILE126 4.1 28.3 0.2
N B:ILE126 4.1 40.7 0.1
CA B:ILE126 4.1 30.4 0.2
CA B:ILE126 4.1 28.6 0.2
CD2 B:PHE226 4.2 22.6 0.1
O B:GLY222 4.2 27.5 0.2
O B:GLY222 4.2 28.0 0.2
CA B:VAL121 4.2 26.9 0.2
N B:ILE126 4.2 41.4 0.1
CA B:ILE126 4.2 38.9 0.1
CA B:VAL121 4.2 25.4 0.2
CA B:VAL121 4.2 30.2 0.1
CA B:VAL121 4.2 27.5 0.1
CA B:VAL121 4.2 25.6 0.1
CA B:VAL121 4.2 26.1 0.2
CA B:ILE126 4.2 40.4 0.1
N B:GLN122 4.3 30.1 0.2
CA B:ILE126 4.3 41.3 0.1
CD1 B:ILE126 4.3 28.7 0.2
CD1 B:ILE126 4.3 26.8 0.2
CD1 B:ILE126 4.3 26.6 0.2
C B:GLY222 4.3 26.9 0.2
C B:GLY222 4.3 26.8 0.1
CB B:VAL121 4.3 26.4 0.2
C B:GLY222 4.3 26.7 0.1
CB B:VAL121 4.3 25.9 0.2
CB B:VAL121 4.3 27.3 0.2
C B:GLY222 4.3 25.1 0.2
CB B:ILE126 4.3 27.0 0.2
CB B:ILE126 4.3 29.1 0.2
CB B:ILE126 4.3 27.2 0.2
CD2 B:PHE226 4.3 22.7 0.2
C B:GLY222 4.3 25.6 0.2
C B:GLY222 4.4 25.3 0.1
CD1 B:PHE226 4.4 22.6 0.1
CD1 B:ILE126 4.4 40.0 0.1
CD2 B:PHE226 4.4 22.4 0.2
CD1 B:ILE126 4.4 38.2 0.1
CD1 B:ILE126 4.4 36.5 0.1
CD1 B:PHE226 4.4 22.1 0.1
CD2 B:PHE226 4.4 22.0 0.2
CD1 B:PHE226 4.4 22.1 0.1
C4 B:T9Y401 4.4 25.3 0.1
C4 B:T9Y401 4.4 25.6 0.1
CB B:VAL121 4.4 30.2 0.1
CB B:VAL121 4.4 27.7 0.1
CB B:VAL121 4.4 25.9 0.1
CB B:ILE126 4.4 37.5 0.1
O B:T9Y401 4.4 26.0 0.1
CB B:ILE126 4.4 39.1 0.1
C4 B:T9Y401 4.5 24.9 0.1
CB B:ILE126 4.5 40.5 0.1
CD1 B:PHE226 4.5 22.0 0.2
CD1 B:PHE226 4.5 22.4 0.2
O B:T9Y401 4.5 27.0 0.1
CD1 B:PHE226 4.5 22.6 0.2
CD1 B:ILE129 4.5 28.2 0.2
CD1 B:ILE129 4.5 28.5 0.2
CD1 B:ILE129 4.5 30.2 0.2
O B:T9Y401 4.5 26.8 0.1
N B:GLU223 4.5 25.3 0.1
C B:LYS125 4.5 41.7 0.1
CA B:LYS125 4.5 33.1 0.2
C B:LYS125 4.5 40.3 0.1
CA B:LYS125 4.5 33.8 0.2
CB B:LYS125 4.5 40.3 0.1
CB B:LYS125 4.5 41.6 0.1
CA B:LYS125 4.5 34.8 0.2
CB B:LYS125 4.6 41.4 0.1
C B:LYS125 4.6 41.8 0.1
C2 B:T9Y401 4.6 26.3 0.1
C2 B:T9Y401 4.6 26.0 0.1
C B:VAL121 4.6 29.1 0.2
C2 B:T9Y401 4.6 25.4 0.1
C B:VAL121 4.6 27.8 0.2
N B:GLU223 4.6 26.7 0.1
N B:GLU223 4.6 26.8 0.1
N B:GLU223 4.6 26.4 0.2
N B:GLU223 4.6 25.9 0.2
C B:GLN122 4.6 32.8 0.2
N B:GLU223 4.6 27.2 0.2
C B:VAL121 4.6 31.6 0.1
C B:VAL121 4.6 26.8 0.1
C B:GLN122 4.6 30.0 0.2
C B:VAL121 4.6 29.1 0.1
O B:LYS125 4.6 30.6 0.2
O B:LYS125 4.7 32.5 0.2
O B:LYS125 4.7 30.0 0.2
C B:GLN122 4.7 33.9 0.1
C B:GLN122 4.7 36.6 0.1
C B:GLN122 4.7 30.7 0.1
C B:VAL121 4.7 28.8 0.2
CG2 B:VAL121 4.7 24.6 0.2
CG2 B:VAL121 4.7 25.8 0.2
CG2 B:VAL121 4.7 26.8 0.1
CG2 B:VAL121 4.7 25.0 0.1
CG2 B:VAL121 4.7 29.8 0.1
CG2 B:VAL121 4.8 24.1 0.2
C B:GLN122 4.8 31.9 0.2
CA B:GLU223 4.8 24.9 0.1
CA B:GLU223 4.8 26.0 0.1
CA B:GLU223 4.8 25.9 0.1
CA B:GLY222 4.8 26.1 0.2
CA B:GLY222 4.8 26.7 0.2
CA B:GLY222 4.8 25.8 0.2
CA B:GLY222 4.8 25.5 0.1
CA B:GLY222 4.8 26.5 0.1
CA B:GLY222 4.8 26.6 0.1
CA B:GLU223 4.8 25.1 0.2
CA B:GLU223 4.8 25.9 0.2
CA B:GLU223 4.8 26.4 0.2
CE2 B:PHE226 4.8 22.6 0.1
CE2 B:PHE226 4.9 22.6 0.1
O B:LYS125 4.9 42.8 0.1
O B:LYS125 4.9 41.4 0.1
O B:LYS125 4.9 42.5 0.1
CA B:GLN122 4.9 32.8 0.2
CA B:GLN122 4.9 30.8 0.2
CE2 B:PHE226 4.9 22.8 0.1
CD1 B:ILE129 4.9 35.0 0.1
CD1 B:ILE129 4.9 36.4 0.1
CA B:GLN122 5.0 33.1 0.1
CA B:GLN122 5.0 29.9 0.1
CD1 B:ILE129 5.0 39.7 0.1
CA B:GLN122 5.0 35.2 0.1
CG B:LYS125 5.0 37.8 0.2
CG B:LYS125 5.0 37.9 0.2
CG B:LYS125 5.0 37.7 0.2

Fluorine binding site 5 out of 9 in 5qyf

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Fluorine binding site 5 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:23.8
occ:0.06
 F B:T9Y401 0.0 23.8 0.1
F B:T9Y401 0.4 26.0 0.1
F B:T9Y401 0.5 25.9 0.1
C6 B:T9Y401 1.2 26.0 0.1
C6 B:T9Y401 1.2 26.1 0.1
C6 B:T9Y401 1.3 24.4 0.1
O B:HOH545 1.6 27.5 0.2
F1 B:T9Y401 1.8 25.4 0.1
F1 B:T9Y401 1.8 25.5 0.1
F2 B:T9Y401 2.2 24.1 0.1
F1 B:T9Y401 2.2 23.4 0.1
C5 B:T9Y401 2.2 25.6 0.1
C5 B:T9Y401 2.2 25.9 0.1
F2 B:T9Y401 2.3 25.9 0.1
F2 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.3 24.6 0.1
N1 B:T9Y401 2.5 24.6 0.1
N1 B:T9Y401 2.5 25.0 0.1
N1 B:T9Y401 2.5 24.3 0.1
O B:HOH545 2.7 29.8 0.2
CG1 B:ILE126 3.2 27.3 0.2
CG1 B:ILE126 3.2 29.2 0.2
CG1 B:ILE126 3.2 27.4 0.2
CG1 B:ILE126 3.2 36.8 0.1
CG1 B:ILE126 3.2 38.4 0.1
CG1 B:ILE126 3.2 40.1 0.1
N B:ILE126 3.3 29.0 0.2
N B:ILE126 3.3 29.4 0.2
N B:ILE126 3.3 31.1 0.2
O B:GLN122 3.3 33.6 0.2
O B:GLN122 3.4 30.8 0.2
O B:GLN122 3.4 31.4 0.2
CB B:LYS125 3.4 34.8 0.2
O B:GLN122 3.4 35.0 0.1
CB B:LYS125 3.4 34.4 0.2
CB B:LYS125 3.4 35.5 0.2
O B:GLN122 3.5 37.1 0.1
O B:GLN122 3.5 32.2 0.1
C3 B:T9Y401 3.6 25.6 0.1
C3 B:T9Y401 3.6 25.9 0.1
C B:LYS125 3.6 32.7 0.2
C3 B:T9Y401 3.6 25.0 0.1
C B:LYS125 3.6 31.2 0.2
C B:LYS125 3.6 30.7 0.2
N B:ILE126 3.7 39.3 0.1
N B:ILE126 3.7 40.7 0.1
O B:HOH559 3.7 33.0 0.2
O B:HOH545 3.7 26.3 0.2
CG1 B:VAL121 3.8 25.4 0.2
N B:ILE126 3.8 41.4 0.1
CA B:ILE126 3.8 28.3 0.2
CG1 B:VAL121 3.8 24.9 0.2
CA B:ILE126 3.8 30.4 0.2
CA B:ILE126 3.8 28.6 0.2
CG1 B:VAL121 3.8 26.6 0.2
CA B:ILE126 3.8 38.9 0.1
CA B:ILE126 3.9 40.4 0.1
N B:T9Y401 3.9 25.8 0.1
N B:T9Y401 3.9 26.0 0.1
CA B:ILE126 3.9 41.3 0.1
N B:T9Y401 3.9 25.0 0.1
CG1 B:VAL121 4.0 30.0 0.1
CG1 B:VAL121 4.0 27.2 0.1
CG1 B:VAL121 4.0 25.4 0.1
N B:GLN122 4.0 30.6 0.2
O B:HOH559 4.0 22.9 0.2
N B:GLN122 4.0 28.9 0.2
CB B:PHE226 4.0 21.7 0.1
CG B:PHE226 4.0 21.9 0.1
CB B:PHE226 4.0 21.6 0.1
CB B:PHE226 4.0 22.3 0.1
CG B:PHE226 4.0 21.9 0.1
N B:GLN122 4.1 28.2 0.1
N B:GLN122 4.1 31.0 0.1
CG B:PHE226 4.1 22.5 0.1
CB B:PHE226 4.1 21.0 0.2
N B:GLN122 4.1 33.4 0.1
C B:LYS125 4.1 41.7 0.1
CB B:ILE126 4.1 27.0 0.2
C B:LYS125 4.1 40.3 0.1
CB B:ILE126 4.1 29.1 0.2
CB B:PHE226 4.1 21.1 0.2
CB B:ILE126 4.1 27.2 0.2
CB B:PHE226 4.1 21.3 0.2
CA B:LYS125 4.1 33.1 0.2
CA B:LYS125 4.1 33.8 0.2
C B:LYS125 4.1 41.8 0.1
CA B:LYS125 4.1 34.8 0.2
CB B:ILE126 4.1 37.5 0.1
CB B:ILE126 4.2 39.1 0.1
CB B:LYS125 4.2 40.3 0.1
CB B:LYS125 4.2 41.6 0.1
CD2 B:PHE226 4.2 22.1 0.1
CB B:LYS125 4.2 41.4 0.1
CG B:PHE226 4.2 21.6 0.2
CB B:ILE126 4.2 40.5 0.1
CG B:PHE226 4.2 22.2 0.2
CG B:PHE226 4.2 21.9 0.2
CD2 B:PHE226 4.2 22.1 0.1
O B:LYS125 4.2 30.6 0.2
O B:LYS125 4.2 30.0 0.2
O B:LYS125 4.2 32.5 0.2
O B:T9Y401 4.3 26.0 0.1
CD2 B:PHE226 4.3 22.6 0.1
CD1 B:ILE126 4.3 26.8 0.2
CD1 B:ILE126 4.3 28.7 0.2
CD1 B:ILE126 4.3 26.6 0.2
N B:GLN122 4.3 30.1 0.2
O B:T9Y401 4.3 27.0 0.1
CD1 B:ILE126 4.3 40.0 0.1
CD1 B:ILE126 4.3 38.2 0.1
CD1 B:ILE126 4.3 36.5 0.1
O B:T9Y401 4.3 26.8 0.1
C4 B:T9Y401 4.3 25.3 0.1
C4 B:T9Y401 4.4 25.6 0.1
CD1 B:ILE129 4.4 28.2 0.2
CD1 B:ILE129 4.4 28.5 0.2
CD1 B:ILE129 4.4 30.2 0.2
C4 B:T9Y401 4.4 24.9 0.1
O B:LYS125 4.4 42.8 0.1
C2 B:T9Y401 4.4 26.3 0.1
C2 B:T9Y401 4.4 26.0 0.1
O B:LYS125 4.4 41.4 0.1
C B:GLN122 4.4 32.8 0.2
C2 B:T9Y401 4.4 25.4 0.1
O B:LYS125 4.4 42.5 0.1
CD2 B:PHE226 4.4 22.7 0.2
C B:GLN122 4.5 30.0 0.2
CD2 B:PHE226 4.5 22.4 0.2
CA B:VAL121 4.5 26.9 0.2
O B:GLY222 4.5 29.0 0.1
C B:GLN122 4.5 33.9 0.1
C B:GLN122 4.5 36.6 0.1
C B:GLN122 4.5 30.7 0.1
CD2 B:PHE226 4.5 22.0 0.2
CA B:VAL121 4.5 30.2 0.1
CA B:VAL121 4.5 27.5 0.1
CA B:VAL121 4.5 25.6 0.1
O B:GLY222 4.5 29.4 0.1
CA B:VAL121 4.5 25.4 0.2
O B:GLY222 4.5 26.6 0.1
CA B:VAL121 4.5 26.1 0.2
O B:GLY222 4.5 29.8 0.2
CD1 B:PHE226 4.6 22.6 0.1
CD1 B:PHE226 4.6 22.1 0.1
CD1 B:PHE226 4.6 22.1 0.1
O B:GLY222 4.6 27.5 0.2
O B:GLY222 4.6 28.0 0.2
C B:GLN122 4.6 31.9 0.2
C B:GLY222 4.6 26.9 0.2
C B:GLY222 4.6 26.8 0.1
CB B:VAL121 4.7 26.4 0.2
C B:GLY222 4.7 26.7 0.1
CD1 B:PHE226 4.7 22.0 0.2
CB B:VAL121 4.7 27.3 0.2
CB B:VAL121 4.7 25.9 0.2
C B:GLY222 4.7 25.1 0.2
CG B:LYS125 4.7 37.8 0.2
CG B:LYS125 4.7 37.9 0.2
CD1 B:PHE226 4.7 22.4 0.2
C B:GLY222 4.7 25.6 0.2
CG B:LYS125 4.7 37.7 0.2
CD1 B:PHE226 4.7 22.6 0.2
C B:GLY222 4.7 25.3 0.1
C B:VAL121 4.7 29.1 0.2
CB B:VAL121 4.7 30.2 0.1
CB B:VAL121 4.7 27.7 0.1
CA B:LYS125 4.7 39.7 0.1
CB B:VAL121 4.7 25.9 0.1
CA B:LYS125 4.8 41.2 0.1
C B:VAL121 4.8 27.8 0.2
CA B:LYS125 4.8 41.4 0.1
N B:GLU223 4.8 25.3 0.1
N B:LYS125 4.8 33.0 0.2
N B:LYS125 4.8 34.0 0.2
C B:VAL121 4.8 31.6 0.1
C B:VAL121 4.8 26.8 0.1
C B:VAL121 4.8 29.1 0.1
N B:LYS125 4.8 35.1 0.2
CD1 B:ILE129 4.8 35.0 0.1
CD1 B:ILE129 4.8 36.4 0.1
CE2 B:PHE226 4.8 22.6 0.1
CD1 B:ILE129 4.8 39.7 0.1
CA B:GLN122 4.8 32.8 0.2
CE2 B:PHE226 4.8 22.6 0.1
C B:VAL121 4.9 28.8 0.2
CA B:GLN122 4.9 30.8 0.2
N B:GLU223 4.9 26.7 0.1
N B:GLU223 4.9 26.4 0.2
N B:GLU223 4.9 25.9 0.2
N B:GLU223 4.9 26.8 0.1
CA B:GLN122 4.9 33.1 0.1
CA B:GLN122 4.9 29.9 0.1
N B:GLU223 4.9 27.2 0.2
CA B:GLN122 4.9 35.2 0.1
CE2 B:PHE226 4.9 22.8 0.1
CA B:GLU223 5.0 24.9 0.1

Fluorine binding site 6 out of 9 in 5qyf

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Fluorine binding site 6 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:26.0
occ:0.12
 F B:T9Y401 0.0 26.0 0.1
F B:T9Y401 0.0 25.9 0.1
F B:T9Y401 0.4 23.8 0.1
C6 B:T9Y401 1.3 26.0 0.1
C6 B:T9Y401 1.3 26.1 0.1
O B:HOH545 1.4 27.5 0.2
C6 B:T9Y401 1.4 24.4 0.1
F2 B:T9Y401 2.0 24.1 0.1
F1 B:T9Y401 2.1 25.4 0.1
F1 B:T9Y401 2.2 25.5 0.1
F2 B:T9Y401 2.2 25.9 0.1
F2 B:T9Y401 2.2 25.9 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.4 24.6 0.1
N1 B:T9Y401 2.5 24.6 0.1
N1 B:T9Y401 2.5 25.0 0.1
F1 B:T9Y401 2.5 23.4 0.1
N1 B:T9Y401 2.5 24.3 0.1
O B:HOH545 2.7 29.8 0.2
CG1 B:ILE126 3.3 29.2 0.2
CG1 B:ILE126 3.3 27.3 0.2
CG1 B:ILE126 3.3 27.4 0.2
CG1 B:ILE126 3.4 36.8 0.1
CG1 B:ILE126 3.4 38.4 0.1
CG1 B:ILE126 3.4 40.1 0.1
CG1 B:VAL121 3.5 25.4 0.2
CG1 B:VAL121 3.5 24.9 0.2
CG1 B:VAL121 3.5 26.6 0.2
O B:GLN122 3.6 33.6 0.2
O B:GLN122 3.6 30.8 0.2
O B:GLN122 3.6 31.4 0.2
C3 B:T9Y401 3.7 25.6 0.1
C3 B:T9Y401 3.7 25.9 0.1
N B:ILE126 3.7 29.0 0.2
O B:GLN122 3.7 35.0 0.1
CB B:PHE226 3.7 21.7 0.1
CB B:PHE226 3.7 21.6 0.1
N B:ILE126 3.7 29.4 0.2
CB B:PHE226 3.7 22.3 0.1
O B:GLN122 3.7 37.1 0.1
N B:ILE126 3.7 31.1 0.2
O B:GLN122 3.7 32.2 0.1
C3 B:T9Y401 3.7 25.0 0.1
CG1 B:VAL121 3.7 30.0 0.1
CG1 B:VAL121 3.7 27.2 0.1
CB B:PHE226 3.7 21.0 0.2
CG1 B:VAL121 3.7 25.4 0.1
CB B:PHE226 3.7 21.1 0.2
CB B:PHE226 3.8 21.3 0.2
O B:HOH545 3.8 26.3 0.2
CB B:LYS125 3.8 34.8 0.2
CB B:LYS125 3.8 34.4 0.2
CB B:LYS125 3.8 35.5 0.2
CG B:PHE226 3.8 21.9 0.1
CG B:PHE226 3.8 21.9 0.1
O B:HOH559 3.8 33.0 0.2
CG B:PHE226 3.8 22.5 0.1
N B:T9Y401 3.9 25.8 0.1
N B:T9Y401 3.9 26.0 0.1
N B:T9Y401 3.9 25.0 0.1
CG B:PHE226 4.0 21.6 0.2
CG B:PHE226 4.0 22.2 0.2
CG B:PHE226 4.0 21.9 0.2
N B:GLN122 4.0 30.6 0.2
N B:GLN122 4.0 28.9 0.2
N B:GLN122 4.0 28.2 0.1
N B:GLN122 4.0 31.0 0.1
N B:GLN122 4.1 33.4 0.1
O B:HOH559 4.1 22.9 0.2
C B:LYS125 4.1 32.7 0.2
CD2 B:PHE226 4.1 22.1 0.1
C B:LYS125 4.1 31.2 0.2
C B:LYS125 4.1 30.7 0.2
O B:GLY222 4.1 29.0 0.1
CD2 B:PHE226 4.1 22.1 0.1
N B:ILE126 4.1 39.3 0.1
O B:GLY222 4.1 29.4 0.1
O B:GLY222 4.1 26.6 0.1
CA B:ILE126 4.1 28.3 0.2
N B:ILE126 4.1 40.7 0.1
O B:GLY222 4.1 29.8 0.2
CA B:ILE126 4.1 30.4 0.2
CA B:ILE126 4.1 28.6 0.2
CD2 B:PHE226 4.2 22.6 0.1
N B:ILE126 4.2 41.4 0.1
CA B:ILE126 4.2 38.9 0.1
O B:GLY222 4.2 27.5 0.2
O B:GLY222 4.2 28.0 0.2
CA B:ILE126 4.2 40.4 0.1
CA B:VAL121 4.2 26.9 0.2
CA B:VAL121 4.2 25.4 0.2
CA B:VAL121 4.2 30.2 0.1
CA B:VAL121 4.2 27.5 0.1
CA B:VAL121 4.2 25.6 0.1
CA B:VAL121 4.2 26.1 0.2
CA B:ILE126 4.3 41.3 0.1
N B:GLN122 4.3 30.1 0.2
CD1 B:ILE126 4.3 28.7 0.2
CD1 B:ILE126 4.3 26.8 0.2
CD1 B:ILE126 4.3 26.6 0.2
C B:GLY222 4.3 26.9 0.2
C B:GLY222 4.3 26.8 0.1
C B:GLY222 4.3 26.7 0.1
CB B:VAL121 4.3 26.4 0.2
CB B:ILE126 4.3 27.0 0.2
CB B:ILE126 4.3 29.1 0.2
CB B:ILE126 4.3 27.2 0.2
CD2 B:PHE226 4.3 22.7 0.2
CB B:VAL121 4.3 25.9 0.2
CB B:VAL121 4.3 27.3 0.2
C B:GLY222 4.3 25.1 0.2
C B:GLY222 4.4 25.6 0.2
CD2 B:PHE226 4.4 22.4 0.2
CD1 B:ILE126 4.4 40.0 0.1
CD1 B:PHE226 4.4 22.6 0.1
CD1 B:ILE126 4.4 38.2 0.1
CD2 B:PHE226 4.4 22.0 0.2
CD1 B:ILE126 4.4 36.5 0.1
C B:GLY222 4.4 25.3 0.1
CD1 B:PHE226 4.4 22.1 0.1
CD1 B:PHE226 4.4 22.1 0.1
C4 B:T9Y401 4.4 25.3 0.1
C4 B:T9Y401 4.4 25.6 0.1
CB B:ILE126 4.4 37.5 0.1
O B:T9Y401 4.4 26.0 0.1
CB B:ILE126 4.4 39.1 0.1
CB B:VAL121 4.4 30.2 0.1
CB B:VAL121 4.4 27.7 0.1
CB B:VAL121 4.4 25.9 0.1
CB B:ILE126 4.5 40.5 0.1
C4 B:T9Y401 4.5 24.9 0.1
CD1 B:PHE226 4.5 22.0 0.2
O B:T9Y401 4.5 27.0 0.1
CD1 B:PHE226 4.5 22.4 0.2
CD1 B:ILE129 4.5 28.2 0.2
CD1 B:ILE129 4.5 28.5 0.2
CD1 B:ILE129 4.5 30.2 0.2
CD1 B:PHE226 4.5 22.6 0.2
O B:T9Y401 4.5 26.8 0.1
C B:LYS125 4.5 41.7 0.1
C B:LYS125 4.5 40.3 0.1
CA B:LYS125 4.5 33.1 0.2
CA B:LYS125 4.5 33.8 0.2
N B:GLU223 4.5 25.3 0.1
CB B:LYS125 4.5 40.3 0.1
CA B:LYS125 4.5 34.8 0.2
CB B:LYS125 4.5 41.6 0.1
CB B:LYS125 4.5 41.4 0.1
C B:LYS125 4.6 41.8 0.1
C2 B:T9Y401 4.6 26.3 0.1
C2 B:T9Y401 4.6 26.0 0.1
C2 B:T9Y401 4.6 25.4 0.1
C B:VAL121 4.6 29.1 0.2
N B:GLU223 4.6 26.7 0.1
N B:GLU223 4.6 26.8 0.1
N B:GLU223 4.6 26.4 0.2
C B:GLN122 4.6 32.8 0.2
C B:VAL121 4.6 27.8 0.2
N B:GLU223 4.6 25.9 0.2
O B:LYS125 4.6 30.6 0.2
N B:GLU223 4.6 27.2 0.2
O B:LYS125 4.6 32.5 0.2
O B:LYS125 4.6 30.0 0.2
C B:GLN122 4.6 30.0 0.2
C B:VAL121 4.7 31.6 0.1
C B:VAL121 4.7 26.8 0.1
C B:VAL121 4.7 29.1 0.1
C B:GLN122 4.7 33.9 0.1
C B:GLN122 4.7 36.6 0.1
C B:GLN122 4.7 30.7 0.1
C B:VAL121 4.7 28.8 0.2
CG2 B:VAL121 4.7 24.6 0.2
CG2 B:VAL121 4.8 25.8 0.2
CG2 B:VAL121 4.8 26.8 0.1
CG2 B:VAL121 4.8 25.0 0.1
CG2 B:VAL121 4.8 29.8 0.1
C B:GLN122 4.8 31.9 0.2
CA B:GLU223 4.8 24.9 0.1
CG2 B:VAL121 4.8 24.1 0.2
CA B:GLU223 4.8 26.0 0.1
CA B:GLU223 4.8 25.9 0.1
CA B:GLY222 4.8 26.1 0.2
CA B:GLY222 4.8 26.7 0.2
CA B:GLY222 4.8 25.8 0.2
CA B:GLY222 4.8 25.5 0.1
CA B:GLY222 4.8 26.5 0.1
CA B:GLY222 4.8 26.6 0.1
CA B:GLU223 4.8 25.9 0.2
CA B:GLU223 4.8 25.1 0.2
CE2 B:PHE226 4.8 22.6 0.1
CA B:GLU223 4.8 26.4 0.2
O B:LYS125 4.8 42.8 0.1
CE2 B:PHE226 4.8 22.6 0.1
O B:LYS125 4.9 41.4 0.1
O B:LYS125 4.9 42.5 0.1
CA B:GLN122 4.9 32.8 0.2
CD1 B:ILE129 4.9 35.0 0.1
CD1 B:ILE129 4.9 36.4 0.1
CE2 B:PHE226 4.9 22.8 0.1
CA B:GLN122 4.9 30.8 0.2
CD1 B:ILE129 4.9 39.7 0.1
CA B:GLN122 5.0 33.1 0.1
CA B:GLN122 5.0 29.9 0.1
CG B:LYS125 5.0 37.8 0.2
CG B:LYS125 5.0 37.9 0.2
CG B:LYS125 5.0 37.7 0.2
CA B:GLN122 5.0 35.2 0.1

Fluorine binding site 7 out of 9 in 5qyf

Go back to Fluorine Binding Sites List in 5qyf
Fluorine binding site 7 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:25.4
occ:0.14
 F1 B:T9Y401 0.0 25.4 0.1
F1 B:T9Y401 0.0 25.5 0.1
F1 B:T9Y401 0.5 23.4 0.1
C6 B:T9Y401 1.3 24.4 0.1
C6 B:T9Y401 1.3 26.1 0.1
C6 B:T9Y401 1.3 26.0 0.1
F B:T9Y401 1.8 23.8 0.1
F B:T9Y401 2.1 26.0 0.1
F2 B:T9Y401 2.1 25.9 0.1
F2 B:T9Y401 2.2 25.9 0.1
F B:T9Y401 2.2 25.9 0.1
F2 B:T9Y401 2.3 24.1 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.4 24.6 0.1
C B:LYS125 2.5 32.7 0.2
C B:LYS125 2.5 31.2 0.2
C B:LYS125 2.5 30.7 0.2
O B:HOH545 2.5 27.5 0.2
CB B:LYS125 2.6 34.8 0.2
CB B:LYS125 2.6 34.4 0.2
CB B:LYS125 2.6 35.5 0.2
O B:LYS125 2.7 30.6 0.2
O B:LYS125 2.7 32.5 0.2
O B:LYS125 2.7 30.0 0.2
N B:ILE126 2.8 29.0 0.2
N B:ILE126 2.8 29.4 0.2
N B:ILE126 2.8 31.1 0.2
O B:HOH559 2.9 33.0 0.2
O B:T9Y401 2.9 26.0 0.1
O B:LYS125 3.0 42.8 0.1
O B:T9Y401 3.0 27.0 0.1
O B:LYS125 3.0 41.4 0.1
O B:LYS125 3.0 42.5 0.1
O B:T9Y401 3.0 26.8 0.1
C B:LYS125 3.0 41.7 0.1
C B:LYS125 3.0 40.3 0.1
C B:LYS125 3.0 41.8 0.1
CA B:LYS125 3.1 33.8 0.2
CA B:LYS125 3.1 33.1 0.2
CA B:LYS125 3.1 34.8 0.2
C3 B:T9Y401 3.2 25.6 0.1
C3 B:T9Y401 3.2 25.9 0.1
N B:ILE126 3.2 39.3 0.1
N B:ILE126 3.2 40.7 0.1
CD1 B:ILE129 3.2 28.5 0.2
CD1 B:ILE129 3.2 28.2 0.2
CD1 B:ILE129 3.2 30.2 0.2
C3 B:T9Y401 3.2 25.0 0.1
N B:ILE126 3.2 41.4 0.1
N1 B:T9Y401 3.3 24.6 0.1
N1 B:T9Y401 3.3 25.0 0.1
N1 B:T9Y401 3.3 24.3 0.1
CB B:LYS125 3.4 40.3 0.1
CB B:LYS125 3.4 41.6 0.1
CB B:LYS125 3.4 41.4 0.1
O B:HOH545 3.4 29.8 0.2
C2 B:T9Y401 3.4 26.3 0.1
C2 B:T9Y401 3.4 26.0 0.1
CA B:ILE126 3.5 28.3 0.2
C2 B:T9Y401 3.5 25.4 0.1
CA B:ILE126 3.5 30.4 0.2
CA B:ILE126 3.5 28.6 0.2
CA B:ILE126 3.5 38.9 0.1
CA B:ILE126 3.5 40.4 0.1
CA B:ILE126 3.5 41.3 0.1
O B:HOH559 3.6 22.9 0.2
CD1 B:ILE129 3.7 35.0 0.1
CD1 B:ILE129 3.7 36.4 0.1
CD1 B:ILE129 3.7 39.7 0.1
CA B:LYS125 3.8 39.7 0.1
CA B:LYS125 3.8 41.2 0.1
CA B:LYS125 3.8 41.4 0.1
CG B:LYS125 4.0 37.8 0.2
CG B:LYS125 4.0 37.9 0.2
CG B:LYS125 4.0 37.7 0.2
CG1 B:ILE129 4.0 30.0 0.2
C1 B:T9Y401 4.0 26.3 0.1
CG1 B:ILE129 4.0 28.2 0.2
CG1 B:ILE129 4.0 27.9 0.2
CG1 B:ILE126 4.1 40.1 0.1
C1 B:T9Y401 4.1 27.4 0.1
CG1 B:ILE126 4.1 38.4 0.1
CG1 B:ILE126 4.1 36.8 0.1
O B:GLN122 4.1 33.6 0.2
CG1 B:ILE126 4.1 29.2 0.2
CG1 B:ILE126 4.1 27.3 0.2
CG1 B:ILE126 4.1 27.4 0.2
C B:T9Y401 4.1 26.4 0.1
O B:GLN122 4.1 35.0 0.1
O B:GLN122 4.1 30.8 0.2
O B:GLN122 4.1 32.2 0.1
O B:GLN122 4.1 37.1 0.1
C1 B:T9Y401 4.1 27.3 0.1
CG1 B:ILE129 4.1 39.6 0.1
CG1 B:ILE129 4.2 36.3 0.1
CG1 B:ILE129 4.2 35.0 0.1
N B:LYS125 4.2 33.0 0.2
N B:LYS125 4.2 34.0 0.2
N B:LYS125 4.2 35.1 0.2
O B:HOH559 4.2 28.6 0.2
C B:T9Y401 4.2 27.8 0.1
O B:HOH545 4.2 26.3 0.2
O B:GLN122 4.3 31.4 0.2
C B:T9Y401 4.3 27.8 0.1
C4 B:T9Y401 4.3 25.3 0.1
C4 B:T9Y401 4.3 25.6 0.1
N B:T9Y401 4.4 25.8 0.1
C4 B:T9Y401 4.4 24.9 0.1
N B:T9Y401 4.4 26.0 0.1
CB B:ILE126 4.4 27.0 0.2
CB B:ILE126 4.4 29.1 0.2
CB B:ILE126 4.4 27.2 0.2
CB B:ILE126 4.4 37.5 0.1
N B:T9Y401 4.4 25.0 0.1
CB B:ILE126 4.4 39.1 0.1
CB B:ILE126 4.4 40.5 0.1
CD2 B:PHE226 4.4 22.1 0.1
CD2 B:PHE226 4.5 22.1 0.1
CD2 B:PHE226 4.5 22.6 0.1
O1 B:T9Y401 4.6 25.9 0.1
O1 B:T9Y401 4.6 25.5 0.1
C B:ILE126 4.6 40.5 0.1
C B:ILE126 4.6 41.8 0.1
O1 B:T9Y401 4.6 25.2 0.1
C B:ILE126 4.6 29.6 0.2
C B:ILE126 4.6 29.7 0.2
C B:ILE126 4.6 31.4 0.2
C B:ILE126 4.6 42.1 0.1
CG B:LYS125 4.7 41.2 0.1
CG B:LYS125 4.7 42.3 0.1
CG B:LYS125 4.7 41.6 0.1
CD2 B:PHE226 4.8 22.7 0.2
CD2 B:PHE226 4.8 22.4 0.2
CB B:ILE129 4.8 30.4 0.2
CB B:ILE129 4.8 28.6 0.2
CD2 B:PHE226 4.8 22.0 0.2
CB B:ILE129 4.8 28.2 0.2
CG B:PHE226 4.8 21.9 0.1
CG B:PHE226 4.8 21.9 0.1
CG B:PHE226 4.9 22.5 0.1
CD B:LYS125 4.9 39.0 0.2
CD B:LYS125 4.9 38.8 0.2
CD B:LYS125 4.9 39.1 0.2
N B:LYS125 4.9 39.2 0.1
N B:LYS125 4.9 40.9 0.1
N B:LYS125 4.9 41.5 0.1
CE2 B:PHE226 4.9 22.6 0.1
CE2 B:PHE226 4.9 22.6 0.1
O B:ILE126 5.0 42.6 0.1
CB B:ILE129 5.0 36.6 0.1
CB B:ILE129 5.0 35.2 0.1
CB B:ILE129 5.0 39.8 0.1
O B:ILE126 5.0 43.9 0.1

Fluorine binding site 8 out of 9 in 5qyf

Go back to Fluorine Binding Sites List in 5qyf
Fluorine binding site 8 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:23.4
occ:0.06
 F1 B:T9Y401 0.0 23.4 0.1
F1 B:T9Y401 0.5 25.5 0.1
F1 B:T9Y401 0.5 25.4 0.1
C6 B:T9Y401 1.3 24.4 0.1
C6 B:T9Y401 1.4 26.1 0.1
C6 B:T9Y401 1.4 26.0 0.1
F2 B:T9Y401 2.0 25.9 0.1
F2 B:T9Y401 2.0 25.9 0.1
F2 B:T9Y401 2.2 24.1 0.1
F B:T9Y401 2.2 23.8 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.3 24.6 0.1
O B:T9Y401 2.4 26.0 0.1
O B:T9Y401 2.5 27.0 0.1
F B:T9Y401 2.5 26.0 0.1
O B:HOH559 2.5 33.0 0.2
F B:T9Y401 2.5 25.9 0.1
O B:T9Y401 2.5 26.8 0.1
O B:HOH545 2.6 27.5 0.2
CB B:LYS125 2.6 34.8 0.2
CB B:LYS125 2.6 34.4 0.2
CB B:LYS125 2.6 35.5 0.2
C B:LYS125 2.7 32.7 0.2
C B:LYS125 2.7 31.2 0.2
C B:LYS125 2.7 30.7 0.2
O B:LYS125 2.7 32.5 0.2
O B:LYS125 2.8 30.6 0.2
O B:LYS125 2.8 30.0 0.2
C3 B:T9Y401 2.9 25.6 0.1
C3 B:T9Y401 2.9 25.9 0.1
C3 B:T9Y401 3.0 25.0 0.1
CD1 B:ILE129 3.0 28.5 0.2
CD1 B:ILE129 3.0 28.2 0.2
CD1 B:ILE129 3.0 30.2 0.2
C2 B:T9Y401 3.0 26.3 0.1
C2 B:T9Y401 3.0 26.0 0.1
O B:LYS125 3.0 42.8 0.1
C2 B:T9Y401 3.0 25.4 0.1
O B:LYS125 3.1 42.5 0.1
O B:LYS125 3.1 41.4 0.1
CA B:LYS125 3.2 33.8 0.2
CA B:LYS125 3.2 33.1 0.2
N B:ILE126 3.2 29.0 0.2
CA B:LYS125 3.2 34.8 0.2
N B:ILE126 3.2 29.4 0.2
N B:ILE126 3.2 31.1 0.2
O B:HOH559 3.2 22.9 0.2
C B:LYS125 3.2 41.7 0.1
C B:LYS125 3.3 40.3 0.1
C B:LYS125 3.3 41.8 0.1
N1 B:T9Y401 3.4 24.6 0.1
N1 B:T9Y401 3.4 25.0 0.1
N1 B:T9Y401 3.4 24.3 0.1
CB B:LYS125 3.4 40.3 0.1
CB B:LYS125 3.4 41.6 0.1
CD1 B:ILE129 3.4 35.0 0.1
CD1 B:ILE129 3.4 36.4 0.1
CB B:LYS125 3.4 41.4 0.1
O B:HOH545 3.5 29.8 0.2
CD1 B:ILE129 3.5 39.7 0.1
C1 B:T9Y401 3.5 26.3 0.1
N B:ILE126 3.6 39.3 0.1
N B:ILE126 3.6 40.7 0.1
C1 B:T9Y401 3.6 27.4 0.1
N B:ILE126 3.6 41.4 0.1
C1 B:T9Y401 3.6 27.3 0.1
C B:T9Y401 3.7 26.4 0.1
O B:HOH559 3.7 28.6 0.2
CG1 B:ILE129 3.8 30.0 0.2
CG1 B:ILE129 3.8 28.2 0.2
C B:T9Y401 3.8 27.8 0.1
CG1 B:ILE129 3.8 27.9 0.2
C B:T9Y401 3.9 27.8 0.1
CA B:ILE126 3.9 28.3 0.2
CA B:ILE126 3.9 30.4 0.2
CA B:ILE126 3.9 28.6 0.2
CA B:ILE126 3.9 38.9 0.1
CA B:ILE126 3.9 40.4 0.1
CG B:LYS125 3.9 37.8 0.2
CG B:LYS125 3.9 37.7 0.2
CG B:LYS125 3.9 37.9 0.2
CA B:ILE126 3.9 41.3 0.1
CG1 B:ILE129 3.9 39.6 0.1
CG1 B:ILE129 4.0 36.3 0.1
CG1 B:ILE129 4.0 35.0 0.1
CA B:LYS125 4.0 39.7 0.1
CA B:LYS125 4.0 41.2 0.1
CA B:LYS125 4.0 41.4 0.1
O1 B:T9Y401 4.1 25.9 0.1
O1 B:T9Y401 4.1 25.5 0.1
C4 B:T9Y401 4.2 25.3 0.1
C4 B:T9Y401 4.2 25.6 0.1
O1 B:T9Y401 4.2 25.2 0.1
C4 B:T9Y401 4.2 24.9 0.1
O B:HOH545 4.3 26.3 0.2
N B:T9Y401 4.4 25.8 0.1
N B:T9Y401 4.4 26.0 0.1
N B:T9Y401 4.4 25.0 0.1
N B:LYS125 4.4 33.0 0.2
N B:LYS125 4.4 34.0 0.2
N B:LYS125 4.4 35.1 0.2
O B:GLN122 4.5 33.6 0.2
O B:GLN122 4.6 35.0 0.1
O B:GLN122 4.6 37.1 0.1
O B:GLN122 4.6 32.2 0.1
O B:GLN122 4.6 30.8 0.2
CD2 B:PHE226 4.6 22.1 0.1
CG1 B:ILE126 4.6 40.1 0.1
CG1 B:ILE126 4.6 29.2 0.2
CG1 B:ILE126 4.6 27.3 0.2
CD2 B:PHE226 4.6 22.1 0.1
CG1 B:ILE126 4.6 27.4 0.2
CG1 B:ILE126 4.6 38.4 0.1
CG1 B:ILE126 4.6 36.8 0.1
CD2 B:PHE226 4.7 22.6 0.1
CD B:LYS125 4.7 39.0 0.2
CD B:LYS125 4.7 38.8 0.2
O B:GLN122 4.7 31.4 0.2
CD B:LYS125 4.7 39.1 0.2
CG B:LYS125 4.7 41.2 0.1
CG B:LYS125 4.7 42.3 0.1
CG B:LYS125 4.7 41.6 0.1
CA B:GLU223 4.7 24.9 0.1
CA B:GLU223 4.8 26.0 0.1
CA B:GLU223 4.8 25.9 0.1
CA B:GLU223 4.8 25.9 0.2
CB B:ILE129 4.8 30.4 0.2
CB B:ILE129 4.8 28.6 0.2
CA B:GLU223 4.8 26.4 0.2
CA B:GLU223 4.8 25.1 0.2
N B:GLU223 4.8 25.3 0.1
CB B:ILE129 4.8 28.2 0.2
N B:GLU223 4.8 26.4 0.2
N B:GLU223 4.8 25.9 0.2
N B:GLU223 4.8 27.2 0.2
N B:GLU223 4.8 26.7 0.1
N B:GLU223 4.9 26.8 0.1
CB B:ILE126 4.9 27.0 0.2
CB B:ILE126 4.9 29.1 0.2
CB B:ILE126 4.9 27.2 0.2
C B:ILE126 4.9 40.5 0.1
CB B:ILE126 4.9 37.5 0.1
CB B:ILE126 4.9 39.1 0.1
CB B:ILE129 4.9 36.6 0.1
CB B:ILE129 4.9 39.8 0.1
CB B:ILE129 4.9 35.2 0.1
C B:ILE126 4.9 41.8 0.1
CB B:ILE126 4.9 40.5 0.1
C B:ILE126 4.9 29.6 0.2
CD2 B:PHE226 4.9 22.7 0.2
C B:ILE126 4.9 29.7 0.2
C B:ILE126 5.0 31.4 0.2
C B:ILE126 5.0 42.1 0.1
CD2 B:PHE226 5.0 22.4 0.2
CB B:GLU223 5.0 26.1 0.1
CD2 B:PHE226 5.0 22.0 0.2
CB B:GLU223 5.0 25.9 0.1

Fluorine binding site 9 out of 9 in 5qyf

Go back to Fluorine Binding Sites List in 5qyf
Fluorine binding site 9 out of 9 in the Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Pandda Analysis Group Deposition -- AAR2/Rnaseh in Complex with Fragment F2X-Entry F02A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F401

b:25.5
occ:0.12
 F1 B:T9Y401 0.0 25.5 0.1
F1 B:T9Y401 0.0 25.4 0.1
F1 B:T9Y401 0.5 23.4 0.1
C6 B:T9Y401 1.3 24.4 0.1
C6 B:T9Y401 1.3 26.1 0.1
C6 B:T9Y401 1.3 26.0 0.1
F B:T9Y401 1.8 23.8 0.1
F2 B:T9Y401 2.1 25.9 0.1
F2 B:T9Y401 2.2 25.9 0.1
F B:T9Y401 2.2 26.0 0.1
F B:T9Y401 2.2 25.9 0.1
F2 B:T9Y401 2.3 24.1 0.1
C5 B:T9Y401 2.3 25.6 0.1
C5 B:T9Y401 2.3 25.9 0.1
C5 B:T9Y401 2.3 24.6 0.1
C B:LYS125 2.5 32.7 0.2
C B:LYS125 2.5 31.2 0.2
C B:LYS125 2.5 30.7 0.2
O B:HOH545 2.5 27.5 0.2
CB B:LYS125 2.6 34.8 0.2
CB B:LYS125 2.6 34.4 0.2
CB B:LYS125 2.6 35.5 0.2
O B:LYS125 2.7 30.6 0.2
O B:LYS125 2.7 32.5 0.2
O B:LYS125 2.7 30.0 0.2
N B:ILE126 2.8 29.0 0.2
N B:ILE126 2.8 29.4 0.2
N B:ILE126 2.8 31.1 0.2
O B:HOH559 2.8 33.0 0.2
O B:T9Y401 2.9 26.0 0.1
O B:LYS125 2.9 42.8 0.1
O B:T9Y401 2.9 27.0 0.1
O B:T9Y401 3.0 26.8 0.1
O B:LYS125 3.0 41.4 0.1
O B:LYS125 3.0 42.5 0.1
C B:LYS125 3.0 41.7 0.1
C B:LYS125 3.0 40.3 0.1
CA B:LYS125 3.0 33.8 0.2
CA B:LYS125 3.0 33.1 0.2
C B:LYS125 3.0 41.8 0.1
CA B:LYS125 3.0 34.8 0.2
C3 B:T9Y401 3.1 25.6 0.1
C3 B:T9Y401 3.1 25.9 0.1
N B:ILE126 3.2 39.3 0.1
N B:ILE126 3.2 40.7 0.1
C3 B:T9Y401 3.2 25.0 0.1
CD1 B:ILE129 3.2 28.5 0.2
CD1 B:ILE129 3.2 28.2 0.2
CD1 B:ILE129 3.2 30.2 0.2
N B:ILE126 3.2 41.4 0.1
N1 B:T9Y401 3.3 24.6 0.1
N1 B:T9Y401 3.3 25.0 0.1
N1 B:T9Y401 3.3 24.3 0.1
CB B:LYS125 3.3 40.3 0.1
CB B:LYS125 3.4 41.6 0.1
CB B:LYS125 3.4 41.4 0.1
O B:HOH545 3.4 29.8 0.2
C2 B:T9Y401 3.4 26.3 0.1
C2 B:T9Y401 3.4 26.0 0.1
C2 B:T9Y401 3.4 25.4 0.1
CA B:ILE126 3.5 28.3 0.2
CA B:ILE126 3.5 30.4 0.2
CA B:ILE126 3.5 38.9 0.1
CA B:ILE126 3.5 28.6 0.2
CA B:ILE126 3.5 40.4 0.1
CA B:ILE126 3.5 41.3 0.1
O B:HOH559 3.5 22.9 0.2
CD1 B:ILE129 3.7 35.0 0.1
CD1 B:ILE129 3.7 36.4 0.1
CD1 B:ILE129 3.7 39.7 0.1
CA B:LYS125 3.8 39.7 0.1
CA B:LYS125 3.8 41.2 0.1
CA B:LYS125 3.8 41.4 0.1
CG B:LYS125 3.9 37.8 0.2
CG B:LYS125 4.0 37.9 0.2
CG B:LYS125 4.0 37.7 0.2
C1 B:T9Y401 4.0 26.3 0.1
CG1 B:ILE129 4.0 30.0 0.2
CG1 B:ILE129 4.0 28.2 0.2
CG1 B:ILE129 4.0 27.9 0.2
C1 B:T9Y401 4.1 27.4 0.1
C B:T9Y401 4.1 26.4 0.1
C1 B:T9Y401 4.1 27.3 0.1
O B:GLN122 4.1 33.6 0.2
CG1 B:ILE126 4.1 40.1 0.1
CG1 B:ILE126 4.1 38.4 0.1
CG1 B:ILE126 4.1 36.8 0.1
CG1 B:ILE129 4.1 39.6 0.1
CG1 B:ILE126 4.1 29.2 0.2
CG1 B:ILE126 4.1 27.3 0.2
CG1 B:ILE126 4.1 27.4 0.2
O B:GLN122 4.1 35.0 0.1
O B:GLN122 4.1 30.8 0.2
O B:GLN122 4.1 32.2 0.1
O B:GLN122 4.1 37.1 0.1
CG1 B:ILE129 4.1 36.3 0.1
CG1 B:ILE129 4.2 35.0 0.1
N B:LYS125 4.2 33.0 0.2
N B:LYS125 4.2 34.0 0.2
O B:HOH559 4.2 28.6 0.2
N B:LYS125 4.2 35.1 0.2
C B:T9Y401 4.2 27.8 0.1
O B:HOH545 4.2 26.3 0.2
C B:T9Y401 4.3 27.8 0.1
O B:GLN122 4.3 31.4 0.2
C4 B:T9Y401 4.3 25.3 0.1
C4 B:T9Y401 4.3 25.6 0.1
C4 B:T9Y401 4.4 24.9 0.1
N B:T9Y401 4.4 25.8 0.1
N B:T9Y401 4.4 26.0 0.1
N B:T9Y401 4.4 25.0 0.1
CB B:ILE126 4.4 27.0 0.2
CB B:ILE126 4.4 29.1 0.2
CB B:ILE126 4.4 27.2 0.2
CB B:ILE126 4.4 37.5 0.1
CB B:ILE126 4.4 39.1 0.1
CD2 B:PHE226 4.5 22.1 0.1
CB B:ILE126 4.5 40.5 0.1
CD2 B:PHE226 4.5 22.1 0.1
O1 B:T9Y401 4.5 25.9 0.1
O1 B:T9Y401 4.5 25.5 0.1
CD2 B:PHE226 4.6 22.6 0.1
O1 B:T9Y401 4.6 25.2 0.1
C B:ILE126 4.6 40.5 0.1
C B:ILE126 4.6 41.8 0.1
C B:ILE126 4.6 29.6 0.2
C B:ILE126 4.6 29.7 0.2
C B:ILE126 4.6 31.4 0.2
C B:ILE126 4.7 42.1 0.1
CG B:LYS125 4.7 41.2 0.1
CG B:LYS125 4.7 42.3 0.1
CG B:LYS125 4.7 41.6 0.1
CD2 B:PHE226 4.8 22.7 0.2
CB B:ILE129 4.8 30.4 0.2
CB B:ILE129 4.8 28.6 0.2
CB B:ILE129 4.8 28.2 0.2
CD2 B:PHE226 4.8 22.4 0.2
CD B:LYS125 4.8 39.0 0.2
CD B:LYS125 4.8 38.8 0.2
CD2 B:PHE226 4.8 22.0 0.2
CD B:LYS125 4.8 39.1 0.2
CG B:PHE226 4.9 21.9 0.1
CG B:PHE226 4.9 21.9 0.1
N B:LYS125 4.9 39.2 0.1
N B:LYS125 4.9 40.9 0.1
CG B:PHE226 4.9 22.5 0.1
N B:LYS125 4.9 41.5 0.1
CE2 B:PHE226 4.9 22.6 0.1
CE2 B:PHE226 4.9 22.6 0.1
O B:ILE126 5.0 42.6 0.1
CB B:ILE129 5.0 36.6 0.1
CB B:ILE129 5.0 35.2 0.1
CB B:ILE129 5.0 39.8 0.1
O B:ILE126 5.0 43.9 0.1

Reference:

J.Wollenhaupt, A.Metz, T.Barthel, G.M.A.Lima, A.Heine, U.Mueller, G.Klebe, M.S.Weiss. F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries For Crystallographic Fragment Screening. Structure V. 28 694 2020.
ISSN: ISSN 0969-2126
PubMed: 32413289
DOI: 10.1016/J.STR.2020.04.019
Page generated: Tue Jul 15 06:38:47 2025

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