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Fluorine in PDB 5rko: Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z30620520

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z30620520, PDB code: 5rko was solved by H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoer, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.35 / 1.42
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.010, 27.060, 55.650, 90.00, 100.27, 90.00
R / Rfree (%) 19.2 / 22.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z30620520 (pdb code 5rko). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z30620520, PDB code: 5rko:

Fluorine binding site 1 out of 1 in 5rko

Go back to Fluorine Binding Sites List in 5rko
Fluorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z30620520


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Phip in Complex with Z30620520 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1501

b:15.2
occ:0.49
F A:GX41501 0.0 15.2 0.5
C A:GX41501 1.3 16.6 0.5
C1 A:GX41501 2.4 16.6 0.5
C5 A:GX41501 2.4 17.2 0.5
OG A:SER1401 2.8 24.6 1.0
OG1 A:THR1396 2.9 16.4 1.0
CB A:THR1396 3.3 16.6 1.0
N A:TYR1404 3.5 14.4 1.0
CA A:THR1396 3.6 16.7 1.0
C2 A:GX41501 3.6 18.2 0.5
C4 A:GX41501 3.6 17.8 0.5
CB A:SER1401 3.7 19.2 1.0
CB A:ILE1403 3.8 15.3 1.0
CB A:TYR1404 3.9 15.3 1.0
CD A:PRO1397 3.9 18.0 1.0
O A:HOH1711 4.0 18.6 1.0
C3 A:GX41501 4.1 18.7 0.5
CA A:TYR1404 4.2 14.7 1.0
C A:ILE1403 4.2 14.4 1.0
CG2 A:ILE1403 4.3 16.0 1.0
CA A:ILE1403 4.3 14.0 1.0
N A:THR1396 4.4 16.9 1.0
N A:ILE1403 4.4 13.8 1.0
O A:SER1392 4.6 14.8 1.0
C A:THR1396 4.7 18.1 1.0
CG2 A:THR1396 4.7 16.8 1.0
N A:PRO1397 4.7 18.5 1.0
OG A:SER1392 4.9 16.1 1.0
CG1 A:ILE1403 5.0 17.1 1.0

Reference:

H.Grosjean, A.Aimon, T.Krojer, R.Talon, A.Douangamath, L.Koekemoer, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, P.C.Biggin. Pandda Analysis Group Deposition of Ground-State Model To Be Published.
Page generated: Tue Jul 15 06:56:08 2025

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