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Fluorine in PDB 5sgm: Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide

Enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide

All present enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide, PDB code: 5sgm was solved by C.Joseph, J.Benz, A.Flohr, J.Peters, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.73 / 2.20
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 141.457, 141.457, 141.457, 90, 90, 90
R / Rfree (%) 19 / 23.1

Other elements in 5sgm:

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide (pdb code 5sgm). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide, PDB code: 5sgm:

Fluorine binding site 1 out of 1 in 5sgm

Go back to Fluorine Binding Sites List in 5sgm
Fluorine binding site 1 out of 1 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 3-N- [2-(4-Fluorophenyl)Imidazo[1,2-A]Pyridin-7-Yl]-4-N,4-N,2- Trimethylpyrazole-3,4-Dicarboxamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:44.3
occ:1.00
 F27 A:IY2803 0.0 44.3 1.0
C24 A:IY2803 1.4 41.2 1.0
C26 A:IY2803 2.4 37.0 1.0
C25 A:IY2803 2.4 36.3 1.0
CB A:GLU721 3.0 37.3 1.0
CD A:GLU721 3.4 40.1 1.0
OE1 A:GLU721 3.5 42.6 1.0
CB A:LYS718 3.5 43.5 1.0
C23 A:IY2803 3.6 35.9 1.0
O A:LYS718 3.6 39.5 1.0
C22 A:IY2803 3.6 36.3 1.0
CD A:LYS718 3.8 42.9 1.0
CG A:GLU721 3.8 40.0 1.0
CB A:PRO712 3.8 39.4 1.0
OE2 A:GLU721 3.9 40.9 1.0
O A:PRO712 4.1 35.5 1.0
NZ A:LYS718 4.1 37.3 1.0
C18 A:IY2803 4.1 33.3 1.0
CG A:LYS718 4.2 41.8 1.0
CA A:GLU721 4.2 39.4 1.0
CE A:LYS718 4.3 38.8 1.0
O A:HOH967 4.3 38.7 1.0
C A:PRO712 4.3 38.1 1.0
O A:GLU721 4.3 37.4 1.0
C A:GLU721 4.4 38.8 1.0
C A:LYS718 4.5 41.9 1.0
CA A:LYS718 4.5 41.2 1.0
CA A:PRO712 4.6 39.7 1.0
N A:GLU721 4.9 38.7 1.0
N A:MET713 5.0 39.6 1.0

Reference:

A.Flohr, D.Schlatter, B.Kuhn, M.G.Rudolph. Crystal Structure of A Human Phosphodiesterase 10 Complex To Be Published.
Page generated: Tue Jul 15 07:14:20 2025

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