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Fluorine in PDB 5sk2: Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole

Enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole

All present enzymatic activity of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole, PDB code: 5sk2 was solved by C.Joseph, J.Benz, A.Flohr, K.Groebke-Zbinden, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.53 / 2.14
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 135.335, 135.335, 235.407, 90, 90, 120
R / Rfree (%) 17.9 / 22.9

Other elements in 5sk2:

The structure of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Zinc (Zn) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole (pdb code 5sk2). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole, PDB code: 5sk2:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 5sk2

Go back to Fluorine Binding Sites List in 5sk2
Fluorine binding site 1 out of 4 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:56.7
occ:1.00
F7 A:KB6803 0.0 56.7 1.0
C6 A:KB6803 1.3 63.2 1.0
C1 A:KB6803 2.3 57.5 1.0
C5 A:KB6803 2.4 60.0 1.0
CB A:ALA732 3.2 41.1 1.0
C2 A:KB6803 3.6 51.4 1.0
C4 A:KB6803 3.6 58.4 1.0
C3 A:KB6803 4.0 61.1 1.0
CA A:ALA732 4.6 41.3 1.0

Fluorine binding site 2 out of 4 in 5sk2

Go back to Fluorine Binding Sites List in 5sk2
Fluorine binding site 2 out of 4 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:73.0
occ:1.00
F7 B:KB6803 0.0 73.0 1.0
C6 B:KB6803 1.3 67.1 1.0
C1 B:KB6803 2.3 59.2 1.0
C5 B:KB6803 2.4 52.8 1.0
CB B:ALA732 3.1 38.7 1.0
C2 B:KB6803 3.5 61.4 1.0
C4 B:KB6803 3.6 53.2 1.0
C3 B:KB6803 4.0 61.8 1.0
CA B:ALA732 4.5 37.2 1.0

Fluorine binding site 3 out of 4 in 5sk2

Go back to Fluorine Binding Sites List in 5sk2
Fluorine binding site 3 out of 4 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F803

b:71.7
occ:1.00
F7 C:KB6803 0.0 71.7 1.0
C6 C:KB6803 1.3 66.6 1.0
C1 C:KB6803 2.2 62.6 1.0
C5 C:KB6803 2.4 62.6 1.0
CB C:ALA732 3.4 38.7 1.0
C2 C:KB6803 3.5 64.9 1.0
C4 C:KB6803 3.6 61.5 1.0
C3 C:KB6803 4.0 67.7 1.0
CA C:ALA732 4.8 37.8 1.0

Fluorine binding site 4 out of 4 in 5sk2

Go back to Fluorine Binding Sites List in 5sk2
Fluorine binding site 4 out of 4 in the Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Human Phosphodiesterase 10 in Complex with 2-(4- Fluorophenyl)-4-(2-Isoquinolin-3-Yloxyethyl)-5-Methyl-1,3-Oxazole within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F803

b:93.9
occ:1.00
F7 D:KB6803 0.0 93.9 1.0
C6 D:KB6803 1.3 82.8 1.0
C5 D:KB6803 2.3 68.9 1.0
C1 D:KB6803 2.3 66.6 1.0
CB D:ALA732 2.9 42.4 1.0
C4 D:KB6803 3.5 62.0 1.0
C2 D:KB6803 3.6 58.7 1.0
C3 D:KB6803 4.0 62.4 1.0
CA D:ALA732 4.3 46.4 1.0
O D:GLY728 4.8 56.9 1.0
C D:ALA732 4.9 45.2 1.0
CG2 D:VAL733 5.0 54.3 1.0

Reference:

A.Flohr, D.Schlatter, B.Kuhn, M.G.Rudolph. Crystal Structure of A Human Phosphodiesterase 10 Complex To Be Published.
Page generated: Thu Aug 1 14:34:28 2024

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