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Fluorine in PDB 5znk: Crystal Structure of A Bacterial Prors with Ligands

Enzymatic activity of Crystal Structure of A Bacterial Prors with Ligands

All present enzymatic activity of Crystal Structure of A Bacterial Prors with Ligands:
6.1.1.15;

Protein crystallography data

The structure of Crystal Structure of A Bacterial Prors with Ligands, PDB code: 5znk was solved by B.Cheng, Y.Yu, H.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.07
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 129.575, 77.204, 73.965, 90.00, 99.33, 90.00
R / Rfree (%) 22.8 / 25.4

Other elements in 5znk:

The structure of Crystal Structure of A Bacterial Prors with Ligands also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of A Bacterial Prors with Ligands (pdb code 5znk). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of A Bacterial Prors with Ligands, PDB code: 5znk:

Fluorine binding site 1 out of 1 in 5znk

Go back to Fluorine Binding Sites List in 5znk
Fluorine binding site 1 out of 1 in the Crystal Structure of A Bacterial Prors with Ligands


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of A Bacterial Prors with Ligands within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F605

b:20.5
occ:1.00
F12 A:9G3605 0.0 20.5 1.0
C1 A:9G3605 1.3 19.9 1.0
C6 A:9G3605 2.3 19.9 1.0
C2 A:9G3605 2.4 20.1 1.0
CL1 A:9G3605 2.9 22.1 1.0
CZ3 A:TRP80 3.3 23.9 1.0
CG A:PRO108 3.4 16.4 1.0
CG A:TYR89 3.5 37.8 1.0
CH2 A:TRP80 3.6 23.8 1.0
C5 A:9G3605 3.6 19.2 1.0
C3 A:9G3605 3.6 19.5 1.0
CD1 A:TYR89 3.6 38.0 1.0
CD2 A:TYR89 3.7 37.5 1.0
CD1 A:LEU93 3.8 25.1 1.0
CE1 A:TYR89 3.9 38.4 1.0
CE2 A:TYR89 3.9 37.7 1.0
CZ A:TYR89 4.0 38.1 1.0
C4 A:9G3605 4.1 19.1 1.0
CB A:TYR89 4.1 38.3 1.0
CB A:PRO108 4.2 16.4 1.0
CB A:LEU93 4.4 26.1 1.0
CE3 A:TRP80 4.5 24.1 1.0
CG A:LEU93 4.5 25.5 1.0
CD A:PRO108 4.6 16.4 1.0
CD2 A:LEU93 4.7 25.7 1.0
C10 A:9G3605 4.8 19.2 1.0
CZ2 A:TRP80 4.8 23.9 1.0
OH A:TYR89 4.9 40.0 1.0

Reference:

B.Cheng, S.Luo, Z.Luo, Y.Chen, Y.Yu, J.Guo, Q.Liu, H.Zhou. Crystal Structure of A Bacterial Prors with Ligands To Be Published.
Page generated: Thu Aug 1 17:31:53 2024

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