Atomistry » Fluorine » PDB 6aol-6b38 » 6ay7
Atomistry »
  Fluorine »
    PDB 6aol-6b38 »
      6ay7 »

Fluorine in PDB 6ay7: Cartilage Homing Cysteine-Dense-Peptides

Protein crystallography data

The structure of Cartilage Homing Cysteine-Dense-Peptides, PDB code: 6ay7 was solved by M.M.Gewe, R.K.Strong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.81 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 27.838, 47.125, 48.538, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 19.3

Other elements in 6ay7:

The structure of Cartilage Homing Cysteine-Dense-Peptides also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cartilage Homing Cysteine-Dense-Peptides (pdb code 6ay7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cartilage Homing Cysteine-Dense-Peptides, PDB code: 6ay7:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 1 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F103

b:15.2
occ:1.00
 F1 A:TFA103 0.0 15.2 1.0
C2 A:TFA103 1.3 14.5 1.0
F2 A:TFA103 2.1 15.2 1.0
F3 A:TFA103 2.2 13.1 1.0
C1 A:TFA103 2.3 13.3 1.0
OXT A:TFA103 2.6 12.1 1.0
O A:TFA103 3.5 10.2 1.0
O A:HOH210 4.7 20.9 1.0

Fluorine binding site 2 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 2 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F103

b:15.2
occ:1.00
 F2 A:TFA103 0.0 15.2 1.0
C2 A:TFA103 1.3 14.5 1.0
F1 A:TFA103 2.1 15.2 1.0
F3 A:TFA103 2.2 13.1 1.0
C1 A:TFA103 2.4 13.3 1.0
O A:TFA103 2.8 10.2 1.0
OXT A:TFA103 3.4 12.1 1.0
O A:HOH220 4.6 13.9 1.0

Fluorine binding site 3 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 3 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F103

b:13.1
occ:1.00
 F3 A:TFA103 0.0 13.1 1.0
C2 A:TFA103 1.3 14.5 1.0
F1 A:TFA103 2.2 15.2 1.0
F2 A:TFA103 2.2 15.2 1.0
C1 A:TFA103 2.3 13.3 1.0
O A:TFA103 2.9 10.2 1.0
OXT A:TFA103 3.2 12.1 1.0
O A:HOH220 3.4 13.9 1.0
ND1 A:HIS9 3.8 11.6 1.0
CB A:HIS9 4.0 11.7 1.0
CG A:HIS9 4.1 13.2 1.0
CE1 A:HIS9 4.7 14.5 1.0
O A:HOH226 4.8 13.1 1.0
O A:HOH210 4.8 20.9 1.0

Fluorine binding site 4 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 4 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F102

b:19.1
occ:1.00
 F1 B:TFA102 0.0 19.1 1.0
C2 B:TFA102 1.3 17.0 1.0
F3 B:TFA102 2.0 17.3 1.0
F2 B:TFA102 2.2 16.0 1.0
C1 B:TFA102 2.3 14.4 1.0
O B:TFA102 2.6 16.5 1.0
OXT B:TFA102 3.4 11.0 1.0
O B:HOH203 4.7 25.5 1.0
O B:HOH209 4.9 11.6 1.0

Fluorine binding site 5 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 5 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F102

b:16.0
occ:1.00
 F2 B:TFA102 0.0 16.0 1.0
C2 B:TFA102 1.3 17.0 1.0
F3 B:TFA102 2.1 17.3 1.0
F1 B:TFA102 2.2 19.1 1.0
C1 B:TFA102 2.3 14.4 1.0
OXT B:TFA102 2.8 11.0 1.0
O B:TFA102 3.2 16.5 1.0
CG B:HIS9 3.5 15.4 1.0
ND1 B:HIS9 3.5 20.8 1.0
O B:HOH209 3.7 11.6 1.0
CB B:HIS9 3.8 12.3 1.0
CD2 B:HIS9 4.0 16.3 1.0
CE1 B:HIS9 4.0 22.3 1.0
NE2 B:HIS9 4.3 20.7 1.0
O B:HOH229 4.5 10.7 1.0
O B:HOH203 4.9 25.5 1.0
O B:HOH242 5.0 32.3 1.0

Fluorine binding site 6 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 6 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F102

b:17.3
occ:1.00
 F3 B:TFA102 0.0 17.3 1.0
C2 B:TFA102 1.3 17.0 1.0
F1 B:TFA102 2.0 19.1 1.0
F2 B:TFA102 2.1 16.0 1.0
C1 B:TFA102 2.3 14.4 1.0
OXT B:TFA102 2.7 11.0 1.0
O B:HOH209 3.2 11.6 1.0
O B:TFA102 3.3 16.5 1.0

Reference:

M.M.Gewe, M.M.Gewe, R.K.Strong. N/A N/A.
Page generated: Thu Aug 1 17:47:30 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy