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Fluorine in PDB 6ay7: Cartilage Homing Cysteine-Dense-Peptides

Protein crystallography data

The structure of Cartilage Homing Cysteine-Dense-Peptides, PDB code: 6ay7 was solved by M.M.Gewe, R.K.Strong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.81 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 27.838, 47.125, 48.538, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 19.3

Other elements in 6ay7:

The structure of Cartilage Homing Cysteine-Dense-Peptides also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cartilage Homing Cysteine-Dense-Peptides (pdb code 6ay7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cartilage Homing Cysteine-Dense-Peptides, PDB code: 6ay7:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 1 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F103

b:15.2
occ:1.00
 F1 A:TFA103 0.0 15.2 1.0
C2 A:TFA103 1.3 14.5 1.0
F2 A:TFA103 2.1 15.2 1.0
F3 A:TFA103 2.2 13.1 1.0
C1 A:TFA103 2.3 13.3 1.0
OXT A:TFA103 2.6 12.1 1.0
O A:TFA103 3.5 10.2 1.0
O A:HOH210 4.7 20.9 1.0

Fluorine binding site 2 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 2 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F103

b:15.2
occ:1.00
 F2 A:TFA103 0.0 15.2 1.0
C2 A:TFA103 1.3 14.5 1.0
F1 A:TFA103 2.1 15.2 1.0
F3 A:TFA103 2.2 13.1 1.0
C1 A:TFA103 2.4 13.3 1.0
O A:TFA103 2.8 10.2 1.0
OXT A:TFA103 3.4 12.1 1.0
O A:HOH220 4.6 13.9 1.0

Fluorine binding site 3 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 3 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F103

b:13.1
occ:1.00
 F3 A:TFA103 0.0 13.1 1.0
C2 A:TFA103 1.3 14.5 1.0
F1 A:TFA103 2.2 15.2 1.0
F2 A:TFA103 2.2 15.2 1.0
C1 A:TFA103 2.3 13.3 1.0
O A:TFA103 2.9 10.2 1.0
OXT A:TFA103 3.2 12.1 1.0
O A:HOH220 3.4 13.9 1.0
ND1 A:HIS9 3.8 11.6 1.0
CB A:HIS9 4.0 11.7 1.0
CG A:HIS9 4.1 13.2 1.0
CE1 A:HIS9 4.7 14.5 1.0
O A:HOH226 4.8 13.1 1.0
O A:HOH210 4.8 20.9 1.0

Fluorine binding site 4 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 4 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F102

b:19.1
occ:1.00
 F1 B:TFA102 0.0 19.1 1.0
C2 B:TFA102 1.3 17.0 1.0
F3 B:TFA102 2.0 17.3 1.0
F2 B:TFA102 2.2 16.0 1.0
C1 B:TFA102 2.3 14.4 1.0
O B:TFA102 2.6 16.5 1.0
OXT B:TFA102 3.4 11.0 1.0
O B:HOH203 4.7 25.5 1.0
O B:HOH209 4.9 11.6 1.0

Fluorine binding site 5 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 5 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F102

b:16.0
occ:1.00
 F2 B:TFA102 0.0 16.0 1.0
C2 B:TFA102 1.3 17.0 1.0
F3 B:TFA102 2.1 17.3 1.0
F1 B:TFA102 2.2 19.1 1.0
C1 B:TFA102 2.3 14.4 1.0
OXT B:TFA102 2.8 11.0 1.0
O B:TFA102 3.2 16.5 1.0
CG B:HIS9 3.5 15.4 1.0
ND1 B:HIS9 3.5 20.8 1.0
O B:HOH209 3.7 11.6 1.0
CB B:HIS9 3.8 12.3 1.0
CD2 B:HIS9 4.0 16.3 1.0
CE1 B:HIS9 4.0 22.3 1.0
NE2 B:HIS9 4.3 20.7 1.0
O B:HOH229 4.5 10.7 1.0
O B:HOH203 4.9 25.5 1.0
O B:HOH242 5.0 32.3 1.0

Fluorine binding site 6 out of 6 in 6ay7

Go back to Fluorine Binding Sites List in 6ay7
Fluorine binding site 6 out of 6 in the Cartilage Homing Cysteine-Dense-Peptides


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cartilage Homing Cysteine-Dense-Peptides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F102

b:17.3
occ:1.00
 F3 B:TFA102 0.0 17.3 1.0
C2 B:TFA102 1.3 17.0 1.0
F1 B:TFA102 2.0 19.1 1.0
F2 B:TFA102 2.1 16.0 1.0
C1 B:TFA102 2.3 14.4 1.0
OXT B:TFA102 2.7 11.0 1.0
O B:HOH209 3.2 11.6 1.0
O B:TFA102 3.3 16.5 1.0

Reference:

M.M.Gewe, M.M.Gewe, R.K.Strong. N/A N/A.
Page generated: Tue Jul 15 09:49:49 2025

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