Fluorine in PDB 6b1l: Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173

Enzymatic activity of Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173

All present enzymatic activity of Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173:
2.3.1.97;

Protein crystallography data

The structure of Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173, PDB code: 6b1l was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.17 / 2.30
*Space group*	P 2₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	80.030, 81.490, 119.440, 90.00, 90.00, 90.00
*R / R_free (%)*	23.2 / 27.1

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173 (pdb code 6b1l). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173, PDB code: 6b1l:

Fluorine binding site 1 out of 1 in 6b1l

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Fluorine Binding Sites List in 6b1l

Fluorine binding site 1 out of 1 in the Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F502 b:45.3 occ:1.00	F12	A:CJ4502	0.0	45.3	1.0
	C11	A:CJ4502	1.4	50.5	1.0
	C10	A:CJ4502	2.4	52.7	1.0
	C13	A:CJ4502	2.4	50.5	1.0
	N15	A:CJ4502	2.8	50.3	1.0
	C16	A:CJ4502	2.8	49.5	1.0
	CE2	A:TYR334	3.4	44.1	1.0
	N14	A:CJ4502	3.6	48.9	1.0
	N09	A:CJ4502	3.6	51.0	1.0
	CD2	A:TYR334	3.8	40.5	1.0
	CD2	A:TYR211	4.0	55.0	1.0
	O	A:HOH681	4.0	31.4	1.0
	CB	A:TYR211	4.0	51.7	1.0
	C08	A:CJ4502	4.0	49.9	1.0
	CD2	A:LEU367	4.1	28.2	1.0
	CG	A:TYR211	4.2	55.2	1.0
	C18	A:CJ4502	4.2	47.9	1.0
	C17	A:CJ4502	4.3	48.0	1.0
	CG	A:LEU367	4.6	35.9	1.0
	CZ	A:TYR334	4.6	44.7	1.0
	CE2	A:TYR211	4.8	55.7	1.0
	CB	A:ASN365	4.8	38.2	1.0
	OH	A:TYR334	5.0	46.4	1.0
	O	A:HOH665	5.0	29.2	1.0

Reference:

D.M.Dranow, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of Glycylpeptide N-Tetradecanoyltransferase From Plasmodium Vivax in Complex with Inhibitor Imp-0001173 To Be Published.

Page generated: Thu Aug 1 17:49:47 2024

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