Fluorine in PDB 6bvf: Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra

The structure of Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Fluorine atom in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra (pdb code 6bvf). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra, PDB code: 6bvf:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range: probe atom residue distance (Å) B Occ B:F201 b:72.8 occ:1.00 F01 B:E9D201 0.0 72.8 1.0 C31 B:E9D201 1.4 72.8 1.0 C26 B:E9D201 2.4 72.8 1.0 C30 B:E9D201 2.4 72.8 1.0 H26 B:E9D201 2.5 72.8 1.0 H30 B:E9D201 2.6 72.8 1.0 OG1 B:THR33 2.8 69.2 1.0 CB B:THR33 3.3 69.2 1.0 O B:ASP29 3.5 76.8 1.0 C27 B:E9D201 3.6 72.8 1.0 C29 B:E9D201 3.6 72.8 1.0 CG2 B:THR33 3.8 69.2 1.0 CD2 B:LEU30 3.8 76.4 1.0 CA B:LEU30 3.8 76.4 1.0 C28 B:E9D201 4.1 72.8 1.0 C B:ASP29 4.1 76.8 1.0 O B:LEU30 4.2 76.4 1.0 N B:LEU30 4.3 76.4 1.0 H27 B:E9D201 4.4 72.8 1.0 CG B:PRO25 4.5 66.4 1.0 C B:LEU30 4.5 76.4 1.0 CD1 B:ILE105 4.5 68.3 1.0 CG2 C:VAL124 4.6 61.0 1.0 CG2 B:ILE105 4.7 68.3 1.0 CA B:THR33 4.7 69.2 1.0 CG B:LEU30 4.7 76.4 1.0 CB B:LEU30 4.7 76.4 1.0 N B:THR33 5.0 69.2 1.0

Fluorine binding site 2 out of 2 in the Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Hepatitis B Virus T=4 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range: probe atom residue distance (Å) B Occ C:F201 b:78.8 occ:1.00 F01 C:E9D201 0.0 78.8 1.0 C31 C:E9D201 1.4 78.8 1.0 C26 C:E9D201 2.4 78.8 1.0 C30 C:E9D201 2.4 78.8 1.0 H26 C:E9D201 2.6 78.8 1.0 H30 C:E9D201 2.6 78.8 1.0 CG C:LEU30 3.1 72.5 1.0 CA C:LEU30 3.3 72.5 1.0 CD1 C:LEU30 3.5 72.5 1.0 C27 C:E9D201 3.6 78.8 1.0 CB C:LEU30 3.6 72.5 1.0 C29 C:E9D201 3.6 78.8 1.0 CB C:THR33 3.7 73.9 1.0 OG1 C:THR33 3.7 73.9 1.0 CG2 C:THR33 3.9 73.9 1.0 N C:LEU30 3.9 72.5 1.0 C28 C:E9D201 4.1 78.8 1.0 O C:ASP29 4.1 77.5 1.0 CD2 C:LEU30 4.2 72.5 1.0 C C:ASP29 4.2 77.5 1.0 H27 C:E9D201 4.4 78.8 1.0 C C:LEU30 4.4 72.5 1.0 CG2 C:ILE105 4.4 68.7 1.0 CD1 C:ILE105 4.4 68.7 1.0 O C:LEU30 4.4 72.5 1.0 CG C:PRO25 4.5 62.1 1.0 CD1 C:TRP102 4.9 64.5 1.0 CB C:ILE105 5.0 68.7 1.0

C.J.Schlicksup, J.C.Wang, S.Francis, B.Venkatakrishnan, W.W.Turner, M.Vannieuwenhze, A.Zlotnick. Hepatitis B Virus Core Protein Allosteric Modulators Can Distort and Disrupt Intact Capsids. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29377794
DOI: 10.7554/ELIFE.31473