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Fluorine in PDB 6fw7: Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan

Enzymatic activity of Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan

All present enzymatic activity of Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan:
1.4.3.23;

Protein crystallography data

The structure of Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan, PDB code: 6fw7 was solved by H.E.Lai, M.Morgan, S.Moore, P.Freemont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.04 / 3.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 151.812, 174.880, 93.919, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 26.2

Other elements in 6fw7:

The structure of Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan (pdb code 6fw7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan, PDB code: 6fw7:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6fw7

Go back to Fluorine Binding Sites List in 6fw7
Fluorine binding site 1 out of 2 in the Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F502

b:66.6
occ:1.00
F B:4FW502 0.0 66.6 1.0
CE3 B:4FW502 1.4 88.4 1.0
CZ3 B:4FW502 2.4 97.1 1.0
CD2 B:4FW502 2.4 98.8 1.0
CG B:4FW502 3.1 87.7 1.0
CB B:4FW502 3.3 67.5 1.0
CH2 B:4FW502 3.6 98.7 1.0
CE2 B:4FW502 3.7 97.5 1.0
NE1 B:TRP397 3.9 47.7 1.0
O B:GLY396 3.9 53.6 1.0
CE1 B:HIS163 4.1 82.1 1.0
NE2 B:HIS163 4.1 78.4 1.0
CA B:GLY396 4.1 64.7 1.0
CZ2 B:4FW502 4.1 98.5 1.0
O B:CYS395 4.2 78.1 1.0
C B:GLY396 4.3 58.4 1.0
CE2 B:TRP397 4.4 54.0 1.0
CD1 B:TRP397 4.4 57.5 1.0
CD1 B:4FW502 4.4 90.6 1.0
CG1 B:VAL363 4.6 60.0 1.0
CG2 B:VAL363 4.6 67.3 1.0
NE1 B:4FW502 4.7 85.7 1.0
CZ2 B:TRP397 4.7 57.0 1.0
CA B:4FW502 4.9 81.7 1.0

Fluorine binding site 2 out of 2 in 6fw7

Go back to Fluorine Binding Sites List in 6fw7
Fluorine binding site 2 out of 2 in the Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum in Complex with 4-Fluoro-L-Tryptophan within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F502

b:65.5
occ:1.00
F A:4FW502 0.0 65.5 1.0
CE3 A:4FW502 1.4 63.4 1.0
CZ3 A:4FW502 2.4 55.0 1.0
CD2 A:4FW502 2.5 68.0 1.0
CB A:4FW502 3.1 57.8 1.0
CG A:4FW502 3.1 68.3 1.0
CH2 A:4FW502 3.7 60.2 1.0
CE2 A:4FW502 3.7 67.4 1.0
O A:CYS395 4.1 79.0 1.0
CA A:GLY396 4.1 60.0 1.0
CZ2 A:4FW502 4.2 68.3 1.0
CG2 A:VAL363 4.2 54.3 1.0
CE1 A:HIS163 4.2 53.4 1.0
CG1 A:VAL363 4.3 62.0 1.0
NE1 A:TRP397 4.4 56.3 1.0
CD1 A:4FW502 4.5 55.6 1.0
CA A:4FW502 4.5 69.2 1.0
NE2 A:HIS163 4.6 54.4 1.0
O A:GLY396 4.6 45.1 1.0
C A:GLY396 4.6 53.8 1.0
NE1 A:4FW502 4.7 47.7 1.0
N A:4FW502 4.7 68.3 1.0
CD1 A:TRP397 4.8 64.5 1.0
C A:CYS395 4.8 66.8 1.0
N A:GLY396 4.9 60.8 1.0
CB A:VAL363 4.9 55.2 1.0

Reference:

H.E.Lai, A.M.C.Obled, S.M.Chee, R.M.Morgan, S.V.Sharma, S.J.Moore, K.M.Polizzi, R.J.M.Goss, P.S.Freemont. A Genochemetic Strategy For Derivatization of the Violacein Natural Product Scaffold Biorxiv 2019.
DOI: 10.1101/202523
Page generated: Tue Jul 15 11:41:33 2025

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