Atomistry » Fluorine » PDB 6gqy-6hay » 6h90
Atomistry »
  Fluorine »
    PDB 6gqy-6hay »
      6h90 »

Fluorine in PDB 6h90: K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A.

Enzymatic activity of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A.

All present enzymatic activity of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A.:
5.4.2.6;

Protein crystallography data

The structure of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A., PDB code: 6h90 was solved by A.J.Robertson, C.Bisson, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.75 / 1.31
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.320, 53.630, 81.500, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 16.3

Other elements in 6h90:

The structure of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Sodium (Na) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A. (pdb code 6h90). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A., PDB code: 6h90:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 6h90

Go back to Fluorine Binding Sites List in 6h90
Fluorine binding site 1 out of 3 in the K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:12.8
occ:1.00
 F1 A:BEF303 0.0 12.8 1.0
BE A:BEF303 1.6 10.6 1.0
F3 A:BEF303 2.5 11.0 1.0
O A:HOH632 2.6 20.5 1.0
OD1 A:ASP8 2.6 10.0 1.0
F2 A:BEF303 2.6 10.3 1.0
N A:ALA115 2.9 9.4 1.0
O A:HOH613 3.3 28.5 1.0
CB A:ALA115 3.4 13.5 1.0
O A:HOH459 3.5 13.0 1.0
OG A:SER114 3.7 9.8 1.0
CA A:ALA115 3.7 10.7 1.0
CG A:ASP8 3.7 9.9 1.0
CA A:SER114 3.8 9.4 1.0
C A:SER114 3.8 8.9 1.0
O A:HOH481 4.1 11.5 1.0
OD2 A:ASP8 4.2 10.2 1.0
CB A:SER114 4.2 8.9 1.0
MG A:MG301 4.3 10.8 1.0
N A:SER116 4.3 10.0 1.0
O A:HOH687 4.4 29.2 1.0
C A:ALA115 4.4 11.7 1.0
O A:HOH462 4.5 17.7 1.0
OE2 A:GLU169 4.5 12.7 1.0
N A:LEU9 4.9 8.9 1.0
CB A:ASP8 4.9 9.9 1.0

Fluorine binding site 2 out of 3 in 6h90

Go back to Fluorine Binding Sites List in 6h90
Fluorine binding site 2 out of 3 in the K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:10.3
occ:1.00
 F2 A:BEF303 0.0 10.3 1.0
BE A:BEF303 1.6 10.6 1.0
MG A:MG301 2.0 10.8 1.0
F3 A:BEF303 2.5 11.0 1.0
F1 A:BEF303 2.6 12.8 1.0
OD1 A:ASP8 2.6 10.0 1.0
OD2 A:ASP8 2.8 10.2 1.0
O A:HOH481 2.9 11.5 1.0
O A:HOH433 3.0 12.6 1.0
O A:ASP10 3.0 10.8 1.0
CG A:ASP8 3.1 9.9 1.0
CB A:ASP10 3.3 12.3 1.0
O A:HOH632 3.4 20.5 1.0
N A:ASP10 3.5 9.5 1.0
O A:HOH613 3.6 28.5 1.0
CA A:ASP10 3.7 10.5 1.0
C A:ASP10 3.7 10.1 1.0
OD1 A:ASP170 4.1 11.2 1.0
OD2 A:ASP10 4.2 22.8 1.0
CG A:ASP10 4.3 17.5 1.0
N A:LEU9 4.5 8.9 1.0
C A:LEU9 4.5 8.9 1.0
CB A:ASP8 4.6 9.9 1.0
OE2 A:GLU169 4.8 12.7 1.0

Fluorine binding site 3 out of 3 in 6h90

Go back to Fluorine Binding Sites List in 6h90
Fluorine binding site 3 out of 3 in the K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of K145A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited By Beryllium Trifluoride to 1.3 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F303

b:11.0
occ:1.00
 F3 A:BEF303 0.0 11.0 1.0
BE A:BEF303 1.6 10.6 1.0
OD1 A:ASP8 2.5 10.0 1.0
F1 A:BEF303 2.5 12.8 1.0
F2 A:BEF303 2.5 10.3 1.0
OG A:SER114 2.6 9.8 1.0
N A:ASP10 2.8 9.5 1.0
N A:LEU9 3.0 8.9 1.0
O A:HOH613 3.2 28.5 1.0
CB A:LEU9 3.3 11.8 0.7
CB A:LEU9 3.3 6.1 0.3
CA A:LEU9 3.4 9.9 0.7
CB A:SER114 3.4 8.9 1.0
CA A:LEU9 3.4 8.3 0.3
CG A:ASP8 3.5 9.9 1.0
C A:LEU9 3.5 8.9 1.0
CA A:ASP10 3.8 10.5 1.0
CB A:ASP10 3.8 12.3 1.0
CA A:SER114 4.0 9.4 1.0
OD2 A:ASP8 4.0 10.2 1.0
N A:ALA115 4.2 9.4 1.0
C A:ASP8 4.2 8.9 1.0
MG A:MG301 4.2 10.8 1.0
O A:ASP10 4.3 10.8 1.0
CG A:LEU9 4.4 15.5 0.7
N A:SER116 4.5 10.0 1.0
CA A:ASP8 4.5 8.8 1.0
C A:SER114 4.5 8.9 1.0
CB A:SER116 4.6 11.7 1.0
C A:ASP10 4.6 10.1 1.0
CB A:ASP8 4.6 9.9 1.0
CD2 A:LEU9 4.6 18.3 0.7
CG A:LEU9 4.7 5.1 0.3
O A:LEU9 4.7 10.1 1.0
O A:HOH632 4.8 20.5 1.0
CD2 A:LEU9 4.8 5.4 0.3

Reference:

A.J.Robertson, C.Bisson, J.P.Waltho. Transition State of Phospho-Enzyme Hydrolysis in Beta-Phosphoglucomutase. To Be Published.
Page generated: Tue Jul 15 12:09:28 2025

Last articles

Mg in 7Y4A
Mg in 7Y44
Mg in 7Y43
Mg in 7XXF
Mg in 7Y3S
Mg in 7Y28
Mg in 7XYR
Mg in 7Y1W
Mg in 7Y1N
Mg in 7Y1M
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy