Fluorine in PDB 6itc: Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine

The structure of Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine (pdb code 6itc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine, PDB code: 6itc:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:49.4 occ:1.00 F1 A:BEF1002 0.0 49.4 1.0 NH2 A:ARG528 1.6 45.4 1.0 BE A:BEF1002 1.8 49.4 1.0 NH1 A:ARG525 2.4 33.5 1.0 CZ A:ARG528 2.7 45.4 1.0 O3B A:ADP1003 2.9 47.1 1.0 F2 A:BEF1002 2.9 49.4 1.0 F3 A:BEF1002 3.0 49.4 1.0 NH1 A:ARG528 3.3 45.4 1.0 N A:GLY103 3.4 44.0 1.0 C A:THR102 3.5 37.9 1.0 CZ A:ARG525 3.6 33.5 1.0 CB A:THR102 3.7 37.9 1.0 NE A:ARG528 3.7 45.4 1.0 CA A:GLY103 3.8 44.0 1.0 CA A:THR102 3.8 37.9 1.0 O A:THR102 3.9 37.9 1.0 NE A:ARG525 3.9 33.5 1.0 O A:GLY524 4.0 32.7 1.0 PB A:ADP1003 4.1 47.1 1.0 O3A A:ADP1003 4.2 47.1 1.0 OG1 A:THR102 4.5 37.9 1.0 C A:GLY524 4.6 32.7 1.0 CG2 A:THR102 4.7 37.9 1.0 NH2 A:ARG525 4.7 33.5 1.0 O2B A:ADP1003 4.8 47.1 1.0

Fluorine binding site 2 out of 3 in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:49.4 occ:1.00 F2 A:BEF1002 0.0 49.4 1.0 BE A:BEF1002 1.8 49.4 1.0 NH1 A:ARG525 1.8 33.5 1.0 O A:ARG489 2.8 32.0 1.0 CZ A:ARG525 2.9 33.5 1.0 F1 A:BEF1002 2.9 49.4 1.0 F3 A:BEF1002 3.0 49.4 1.0 NH2 A:ARG525 3.3 33.5 1.0 NE2 A:GLN521 3.7 34.5 1.0 CG A:GLN521 3.8 34.5 1.0 O3B A:ADP1003 3.9 47.1 1.0 CB A:THR102 3.9 37.9 1.0 CG2 A:THR102 3.9 37.9 1.0 C A:ARG489 3.9 32.0 1.0 OE2 A:GLU208 4.0 37.2 1.0 NE A:ARG525 4.0 33.5 1.0 NH2 A:ARG528 4.2 45.4 1.0 CD A:GLN521 4.2 34.5 1.0 CA A:THR102 4.6 37.9 1.0 CA A:GLY490 4.6 39.2 1.0 OE1 A:GLU208 4.6 37.2 1.0 CD A:GLU208 4.7 37.2 1.0 NZ A:LYS106 4.8 37.1 1.0 CA A:ARG489 4.8 32.0 1.0 N A:GLY490 4.8 39.2 1.0

Fluorine binding site 3 out of 3 in the Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of A Substrate Engaged Seca-Secy Protein Translocation Machine within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:49.4 occ:1.00 F3 A:BEF1002 0.0 49.4 1.0 BE A:BEF1002 1.8 49.4 1.0 F2 A:BEF1002 3.0 49.4 1.0 F1 A:BEF1002 3.0 49.4 1.0 O A:GLY490 3.1 39.2 1.0 O3B A:ADP1003 3.2 47.1 1.0 NH1 A:ARG525 3.3 33.5 1.0 C A:GLY490 3.3 39.2 1.0 O2B A:ADP1003 3.4 47.1 1.0 CA A:GLY490 3.5 39.2 1.0 MG A:MG1001 3.6 49.5 1.0 O A:ARG489 3.6 32.0 1.0 NH2 A:ARG528 3.7 45.4 1.0 PB A:ADP1003 3.7 47.1 1.0 O3A A:ADP1003 3.9 47.1 1.0 CZ A:ARG525 4.1 33.5 1.0 O2A A:ADP1003 4.1 47.1 1.0 NH1 A:ARG528 4.1 45.4 1.0 N A:THR491 4.1 38.3 1.0 NE A:ARG525 4.3 33.5 1.0 CZ A:ARG528 4.4 45.4 1.0 O A:THR491 4.5 38.3 1.0 C A:ARG489 4.5 32.0 1.0 N A:GLY490 4.5 39.2 1.0 C A:THR491 4.6 38.3 1.0 PA A:ADP1003 4.7 47.1 1.0 OE2 A:GLU208 4.7 37.2 1.0 CA A:THR491 5.0 38.3 1.0 N A:ASP492 5.0 41.7 1.0

C.Ma, X.Wu, D.Sun, E.Park, M.A.Catipovic, T.A.Rapoport, N.Gao, L.Li. Structure of the Substrate-Engaged Seca-Secy Protein Translocation Machine. Nat Commun V. 10 2872 2019.
ISSN: ESSN 2041-1723
PubMed: 31253804
DOI: 10.1038/S41467-019-10918-2